@Test
public void testGetTargetCodesToNodeList() throws Exception {
LexBIGService lbs = ServiceHolder.instance().getLexBIGService();
CodedNodeGraph mappingGraph = lbs.getNodeGraph(MAPPING_SCHEME_URI, null, null);
CodedNodeSet cns =
mappingGraph.restrictToTargetCodeSystem(PARTS_SCHEME).toNodeList(null, false, true, 0, -1);
ResolvedConceptReferencesIterator itr = cns.resolve(null, null, null);
int count = 0;
Set<String> foundCodes = new HashSet<String>();
while (itr.hasNext()) {
count++;
foundCodes.add(itr.next().getCode());
}
assertEquals(3, foundCodes.size());
assertTrue(foundCodes.contains("R0001"));
assertTrue(foundCodes.contains("E0001"));
assertTrue(foundCodes.contains("P0001"));
}
public void testT1_FNC_11() throws LBException {
// in LexBig, a role is just an association, so this is traversing
// associations.
CodedNodeGraph cng =
ServiceHolder.instance().getLexBIGService().getNodeGraph(THES_SCHEME, null, null);
cng.restrictToAssociations(
Constructors.createNameAndValueList(new String[] {"subClassOf"}), null);
// role "Anatomy_Kind"
ResolvedConceptReference[] rcr =
cng.resolveAsList(
Constructors.createConceptReference("Anatomy_Kind", THES_SCHEME),
false,
true,
1,
1,
null,
null,
null,
0)
.getResolvedConceptReference();
// check for some source (down) codes that I know should be there.
assertTrue(rcr.length == 1);
assertTrue(rcr[0].getConceptCode().equals("Anatomy_Kind"));
Association[] a = rcr[0].getTargetOf().getAssociation();
assertTrue(contains(a, "subClassOf", "Anatomic_Structure_System_or_Substance"));
// go down one more level from one of the codes.
ConvenienceMethods cm = new ConvenienceMethods(ServiceHolder.instance().getLexBIGService());
a =
new Association[] {
cm.getAssociationForwardOneLevel(
"Anatomic_Structure_System_or_Substance",
"roles",
"subClassOf",
THES_SCHEME,
null,
false,
null)
};
contains(a, "subClassOf", "C13018");
contains(a, "subClassOf", "Body_Fluid_or_Substance");
}
public void testT1_FNC_02() throws LBException {
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns.restrictToCodes(
Constructors.createConceptReferenceList(
new String[] {"Vallecula", "Palate", "Hard_Palate"}, THES_SCHEME));
// this test is really lacking... but here is how you subset. You can
// serialize however
// you want from here...
assertTrue(cns.resolveToList(null, null, null, 0).getResolvedConceptReference().length == 3);
}
@Test
public void testT1_FNC_16() throws LBException {
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(AUTO_SCHEME, null);
cns = cns.restrictToStatus(null, new String[] {"Retired"});
ResolvedConceptReference[] rcr =
cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue(rcr.length == 1);
assertTrue(rcr[0].getConceptCode().equals("73"));
}
/*
* Example of listCodeRelationships
*/
@Test
public void testT1_FNC_31() throws LBException {
LexBIGService lbs = ServiceHolder.instance().getLexBIGService();
CodedNodeGraph cng = lbs.getNodeGraph(AUTO_SCHEME, null, null);
ConceptReference ref4 = ConvenienceMethods.createConceptReference("A0001", AUTO_SCHEME);
ConceptReference ref5 = ConvenienceMethods.createConceptReference("C0001", AUTO_SCHEME);
ConceptReference ref6 = ConvenienceMethods.createConceptReference("Tires", "ExpendableParts");
List<String> assocs = cng.listCodeRelationships(ref4, ref5, true);
assertTrue(assocs.contains("hasSubtype"));
assocs = cng.listCodeRelationships(ref4, ref6, false);
assertTrue(assocs.contains("uses"));
}
public void testT1_FNC_17() throws LBException {
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToMatchingDesignations(
"heaart", SearchDesignationOption.ALL, "DoubleMetaphoneLuceneQuery", null);
ResolvedConceptReference[] rcr =
cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
// should have found the concept code C48589 - "Base of the Heart"
boolean found = false;
for (int i = 0; i < rcr.length; i++) {
if (rcr[i].getConceptCode().equals("Base_of_the_Heart")) {
found = true;
}
}
assertTrue(found);
}
