/**
* Test coding scheme restriction search.
*
* @throws Exception the exception
*/
public void testCodingSchemeRestrictionSearch() throws Exception {
LexBIGServiceMetadata md = ServiceHolder.instance().getLexBIGService().getServiceMetadata();
md = md.restrictToValue("English", "LuceneQuery");
MetadataProperty[] result = md.resolve().getMetadataProperty();
HashSet<String> temp = new HashSet<String>();
for (int i = 0; i < result.length; i++) {
temp.add(result[i].getCodingSchemeURI() + ":" + result[i].getCodingSchemeVersion());
}
// should contain this
assertTrue(temp.contains(THES_URN + ":" + THES_METADATA_VERSION));
// now do the restriction, and retest.
md = ServiceHolder.instance().getLexBIGService().getServiceMetadata();
md = md.restrictToValue("English", "LuceneQuery");
md =
md.restrictToCodingScheme(
Constructors.createAbsoluteCodingSchemeVersionReference(
THES_URN, THES_METADATA_VERSION));
result = md.resolve().getMetadataProperty();
temp = new HashSet<String>();
for (int i = 0; i < result.length; i++) {
temp.add(result[i].getCodingSchemeURI() + ":" + result[i].getCodingSchemeVersion());
}
// should be more than 1 unique code system.
assertTrue(temp.size() >= 1);
// should contain this
assertTrue(temp.contains(THES_URN + ":" + THES_METADATA_VERSION));
}
/**
* Test map synonymto preferred names.
*
* @throws LBException the LB exception
*/
public void testMapSynonymtoPreferredNames() throws LBException {
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToMatchingDesignations(
"skeleton", SearchDesignationOption.ALL, "exactMatch", null);
ResolvedConceptReference[] rcr =
cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue(rcr.length == 2);
boolean found = false;
for (int i = 0; i < rcr.length; i++) {
if (rcr[i].getConceptCode().equals("C12788")) {
found = true;
assertTrue(rcr[i].getReferencedEntry().getPropertyCount() == 5);
assertTrue(
rcr[i]
.getReferencedEntry()
.getEntityDescription()
.getContent()
.equals("Skeletal System"));
}
}
assertTrue(found);
}
/**
* Testfor current or obsolete conceptb.
*
* @throws LBException the LB exception
*/
public void testforCurrentOrObsoleteConceptb() throws LBException {
// same as above, but this time, using the new methods (that aren't deprecated)
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns = cns.restrictToStatus(ActiveOption.ACTIVE_ONLY, null);
cns =
cns.restrictToCodes(
Constructors.createConceptReferenceList(new String[] {"C38389"}, THES_SCHEME));
ResolvedConceptReference[] rcr =
cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue("1", rcr.length == 0);
cns = ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns = cns.restrictToStatus(ActiveOption.ALL, null);
cns =
cns.restrictToCodes(
Constructors.createConceptReferenceList(new String[] {"C38389"}, THES_SCHEME));
rcr = cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue("2", rcr.length == 1);
// same test again - no status restriction
cns = ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToCodes(
Constructors.createConceptReferenceList(new String[] {"C38389"}, THES_SCHEME));
rcr = cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue("3", rcr.length == 1);
// add a status restriction
cns = ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToMatchingDesignations(
"Sex Not Known", SearchDesignationOption.ALL, "exactMatch", null);
cns = cns.restrictToStatus(ActiveOption.INACTIVE_ONLY, null);
rcr = cns.resolveToList(null, null, null, 0).getResolvedConceptReference();
assertTrue("4", rcr.length == 1);
assertFalse("6", rcr[0].getReferencedEntry().getIsActive().booleanValue());
}
/**
* Test list coding schemes.
*
* @throws Exception the exception
*/
public void testListCodingSchemes() throws Exception {
LexBIGServiceMetadata md = ServiceHolder.instance().getLexBIGService().getServiceMetadata();
AbsoluteCodingSchemeVersionReference[] acsvrl =
md.listCodingSchemes().getAbsoluteCodingSchemeVersionReference();
assertTrue(acsvrl.length >= 1);
assertTrue(
contains(
acsvrl,
Constructors.createAbsoluteCodingSchemeVersionReference(
THES_URN, THES_METADATA_VERSION)));
}
/**
* Test container restriction search.
*
* @throws Exception the exception
*/
public void testContainerRestrictionSearch() throws Exception {
LexBIGServiceMetadata md = ServiceHolder.instance().getLexBIGService().getServiceMetadata();
md = md.restrictToValue("OWL-FULL", "LuceneQuery");
md =
md.restrictToCodingScheme(
Constructors.createAbsoluteCodingSchemeVersionReference(
THES_URN, THES_METADATA_VERSION));
MetadataProperty[] result = md.resolve().getMetadataProperty();
assertTrue(result.length >= 1);
assertTrue(contains(result, THES_URN, THES_METADATA_VERSION, "format", "OWL-FULL"));
}
/**
* Test retrieve most recent versionof concept.
*
* @throws LBException the LB exception
*/
public void testRetrieveMostRecentVersionofConcept() throws LBException {
// not providing a version number gets you the PRODUCTION (which can be assumed to be the latest
// good version)
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToCodes(
Constructors.createConceptReferenceList(new String[] {"C12223"}, THES_SCHEME));
assertTrue(cns.resolveToList(null, null, null, 0).getResolvedConceptReference().length == 1);
}
/**
* Test limit returned values.
*
* @throws LBException the LB exception
*/
public void testLimitReturnedValues() throws LBException {
CodedNodeSet cns =
ServiceHolder.instance().getLexBIGService().getCodingSchemeConcepts(THES_SCHEME, null);
cns =
cns.restrictToMatchingDesignations(
"heaart", SearchDesignationOption.ALL, "DoubleMetaphoneLuceneQuery", null);
ResolvedConceptReference[] rcr =
cns.resolveToList(null, null, null, 1).getResolvedConceptReference();
assertTrue(rcr.length == 1);
}
public void testNextInt() {
try {
LexBIGService lbs = ServiceHolder.instance().getLexBIGService();
CodedNodeSet cns = lbs.getCodingSchemeConcepts("NCI Thesaurus", null);
cns = cns.restrictToMatchingDesignations("heart", null, "startsWith", null);
ResolvedConceptReferencesIterator rcrl = cns.resolve(null, null, null, null, false);
ResolvedConceptReferenceList list1 = rcrl.next(10);
ResolvedConceptReferenceList list2 = rcrl.next(10);
assertFalse(compareResolvedConceptReferenceList(list1, list2));
} catch (Exception e) {
fail("Exception Thrown: " + e.getMessage());
e.printStackTrace();
}
}
/**
* Test value restriction.
*
* @throws Exception the exception
*/
public void testValueRestriction() throws Exception {
LexBIGServiceMetadata md = ServiceHolder.instance().getLexBIGService().getServiceMetadata();
md =
md.restrictToCodingScheme(
Constructors.createAbsoluteCodingSchemeVersionReference(
THES_URN, THES_METADATA_VERSION));
md = md.restrictToValue(".*core.*", "RegExp");
MetadataProperty[] result = md.resolve().getMetadataProperty();
assertTrue(result.length >= 2);
assertTrue(
contains(
result,
THES_URN,
THES_METADATA_VERSION,
"homepage",
"http://ncicb.nci.nih.gov/core/EVS"));
}
public void testNext() {
try {
LexBIGService lbs = ServiceHolder.instance().getLexBIGService();
CodedNodeSet cns = lbs.getCodingSchemeConcepts("NCI Thesaurus", null);
cns = cns.restrictToMatchingDesignations("heart", null, "startsWith", null);
ResolvedConceptReferencesIterator rcrl = cns.resolve(null, null, null, null, false);
String conceptCode = null;
while (rcrl.hasNext()) {
ResolvedConceptReference ref = rcrl.next();
String currentCode = ref.getConceptCode();
assertFalse(currentCode.equals(conceptCode));
conceptCode = currentCode;
}
} catch (Exception e) {
fail("Exception Thrown: " + e.getMessage());
e.printStackTrace();
}
}