@Test
public void testSmallFasta2() {
try {
InputStream inStream = this.getClass().getResourceAsStream("/test.fasta");
FastaReader<ProteinSequence, AminoAcidCompound> fastaReader =
new FastaReader<ProteinSequence, AminoAcidCompound>(
inStream,
new GenericFastaHeaderParser<ProteinSequence, AminoAcidCompound>(),
new ProteinSequenceCreator(AminoAcidCompoundSet.getAminoAcidCompoundSet()));
int nrSeq = 0;
LinkedHashMap<String, ProteinSequence> b = fastaReader.process();
assertNotNull(b);
// #282 make sure that process() still works
assertTrue(b.keySet().size() == 10);
} catch (Exception ex) {
ex.printStackTrace();
java.util.logging.Logger.getLogger(this.getClass().getName()).log(Level.SEVERE, null, ex);
fail(ex.getMessage());
}
}
/** Test of SavePersonData method, of class MetadataRDFConverter. */
@Test
public void testSavePersonData() {
System.out.println("* MetadataRDFConverterTest: SavePersonData");
try {
foaf_Person oPersonNull = null;
OntModel oModel = MetadataGlobal.LoadOWL(MetadataConstants.sLocationLoadAlert);
MetadataRDFConverter.SavePersonData(oPersonNull, oModel);
MetadataGlobal.SaveOWL(oModel, MetadataConstants.sLocationSaveAlert);
foaf_Person oPerson = new foaf_Person();
oPerson.m_sFirstName = "Ivan";
oPerson.m_sLastName = "Obradovic";
// oPerson.m_sGender = ""; //???
oPerson.m_sID = "*****@*****.**";
oPerson.m_sEmail = "*****@*****.**"; // ???
MetadataRDFConverter.SavePersonData(oPerson, oModel);
MetadataGlobal.SaveOWL(oModel, MetadataConstants.sLocationSaveAlert);
assertNotNull(oPerson);
assertEquals(oPerson.m_sObjectURI.isEmpty(), false);
//// TO-DO review the generated test code and remove the default call to fail.
// fail("The test case is a prototype.");
} catch (Exception ex) {
System.out.println("Error: " + ex.getMessage());
}
}
@Test
public void testSmallFasta() {
try {
InputStream inStream = this.getClass().getResourceAsStream("/test.fasta");
FastaReader<ProteinSequence, AminoAcidCompound> fastaReader =
new FastaReader<ProteinSequence, AminoAcidCompound>(
inStream,
new GenericFastaHeaderParser<ProteinSequence, AminoAcidCompound>(),
new ProteinSequenceCreator(AminoAcidCompoundSet.getAminoAcidCompoundSet()));
LinkedHashMap<String, ProteinSequence> b;
int nrSeq = 0;
while ((b = fastaReader.process(10)) != null) {
for (String key : b.keySet()) {
nrSeq++;
// #282 would result in an endless loop
// this makes sure it has been fixed.
assertTrue(
"Looks like there is a problem with termination of processing of the FASTA file!",
nrSeq < 15);
}
}
} catch (Exception ex) {
ex.printStackTrace();
java.util.logging.Logger.getLogger(this.getClass().getName()).log(Level.SEVERE, null, ex);
fail(ex.getMessage());
}
}
com.u2d.generated.FormatEnum castJmatterObject(Object object) {
try {
com.u2d.generated.FormatEnum output = (com.u2d.generated.FormatEnum) object;
return output;
} catch (Exception e) {
Assert.fail(e.getMessage());
return null;
}
}
org.jts.jsidl.binding.FormatEnum castJaxbObject(Object object) {
try {
org.jts.jsidl.binding.FormatEnum output = (org.jts.jsidl.binding.FormatEnum) object;
return output;
} catch (Exception e) {
Assert.fail(e.getMessage());
return null;
}
}
public EvalResult(String result, String stdout, String stderr, Exception e) {
this.result = result;
this.stdout = stdout;
this.stderr = stderr;
if (e == null) {
this.exception = null;
} else {
this.exception = e.getClass().getName() + e.getMessage();
}
}
@Test
public void today() {
try {
Calendar today = Calendar.getInstance();
beginOfDay(today);
assertTrue(sufficientlyEqual(DynamicDate.getInstance("today"), today.getTime()));
} catch (Exception e) {
fail(e.getMessage());
}
}
@Test(expected = NullPointerException.class)
public void testDebugger() {
assertNull("Failure: object was not null..", _nullObject);
try {
_nullObject.toString();
} catch (Exception ex) {
String message = ex.getMessage();
assertTrue("Failure: it's not a nullpointer exception", message.contains("null"));
}
}
@Before
/** Setup the database and unmarshaller before we run the unit tests */
public void setup() {
seedDatabase();
try {
jc = JAXBContext.newInstance("org.jts.jsidl.binding");
unmarshaller = jc.createUnmarshaller();
} catch (Exception e) {
Assert.fail(e.getMessage());
}
}
/** prueba excepción un número negativo */
@Test
public void excepcionNegativos() {
try {
Calculadora.add("-6,4,-2");
fail("No se lanzo una excepción cuando se intento sumar un número negativo: //*\n1*-2");
} catch (Exception ex) {
assertEquals("Negatives not allowed: -6, -2", ex.getMessage());
}
try {
Calculadora.add("//*\n4*-3");
fail("No se lanzo una excepción cuando se intento sumar un número negativo: //*\n1*-2");
} catch (Exception ex) {
assertEquals("Negatives not allowed: -3", ex.getMessage());
}
try {
Calculadora.add("//*\n2*-4*6*8*-10*12*-14");
fail(
"No se lanzo una excepción cuando se intento sumar un número negativo: //*\n1*-2*2*3*-5*8*-1");
} catch (Exception ex) {
assertEquals("Negatives not allowed: -4, -10, -14", ex.getMessage());
}
}
@Before
public void setUp() throws Exception {
initializeSystem();
try {
localReset();
} catch (Exception e) {
System.out.println("Warning: Preclean failed: " + e.getMessage());
}
try {
localSetUp();
} catch (Exception e) {
e.printStackTrace();
throw e;
}
}
@Before
public void clearGrammarCache() {
LOG.info("Clearing grammar cache");
ResourceSet results = null;
try {
results = executeQuery("validation:clear-grammar-cache()");
String r = (String) results.getResource(0).getContent();
System.out.println(r);
} catch (Exception e) {
LOG.error(e);
e.printStackTrace();
fail(e.getMessage());
}
}
@Test
public void test006() throws Exception {
J2V8Handler h =
new J2V8Handler(
readFile("../../src/main/resources/js/j2v8test04.js", Charset.defaultCharset()), 1);
h.init();
assertEquals(30, h.getCommitInterval());
assertEquals(false, h.getTerminateOnBadData());
try {
h.process(
readFile("../../src/main/resources/js/j2v8test04_data.js", Charset.defaultCharset()));
assertEquals(true, true);
} catch (Exception e) {
System.err.println(e.getMessage());
assertEquals(true, false);
}
}
@Test
public void test007() throws Exception {
J2V8Handler h =
new J2V8Handler(
readFile("../../src/main/resources/js/j2v8test07.js", Charset.defaultCharset()), 1);
h.init();
try {
String data =
readFile("../../src/main/resources/js/j2v8test07_data.js", Charset.defaultCharset());
long start = System.currentTimeMillis();
for (int i = 0; i < 1000000; i++) h.process(data);
long elapsedTime = System.currentTimeMillis() - start;
System.err.println(elapsedTime);
assertEquals(true, true);
} catch (Exception e) {
System.err.println(e.getMessage());
assertEquals(true, false);
}
}
private void executeAndEvaluate(String query, String expectedValue) {
LOG.info("Query=" + query);
LOG.info("ExpectedValue=" + query);
try {
ResourceSet results = executeQuery(query);
assertEquals(1, results.getSize());
String r = (String) results.getResource(0).getContent();
LOG.info(r);
assertXpathEvaluatesTo(expectedValue, "//status/text()", r);
} catch (Exception ex) {
LOG.error(ex);
fail(ex.getMessage());
}
}
@Before
public void setup() {
logger.info("setup");
this.mockMvc =
MockMvcBuilders.webAppContextSetup(context).addFilters(springSecurityFilterChain).build();
User user = null;
try {
user = userService.findByLogin("johndoe");
} catch (ServiceException e) {
logger.error(e.getLocalizedMessage());
}
Authentication authentication =
new UsernamePasswordAuthenticationToken(user.getLogin(), user.getPassword());
Authentication result = authenticationManager.authenticate(authentication);
SecurityContext securityContext = SecurityContextHolder.getContext();
securityContext.setAuthentication(result);
session = new MockHttpSession();
session.setAttribute(
HttpSessionSecurityContextRepository.SPRING_SECURITY_CONTEXT_KEY, securityContext);
try {
logger.info("Create Tomcat server");
String jsonString =
"{\"applicationName\":\"" + applicationName + "\", \"serverName\":\"" + release + "\"}";
ResultActions resultats =
mockMvc.perform(
post("/application")
.session(session)
.contentType(MediaType.APPLICATION_JSON)
.content(jsonString));
resultats.andExpect(status().isOk());
} catch (Exception e) {
logger.error(e.getMessage());
}
}
@Test
public void test010_DeploySimpleApplicationTest() throws Exception {
logger.info("Deploy an SpringBoot application");
String binary = "spring-boot.jar";
try {
logger.info("Create " + binary + " application.");
String jsonString =
"{\"applicationName\":\"" + applicationName + "\", \"serverName\":\"" + release + "\"}";
ResultActions resultats =
mockMvc.perform(
post("/application")
.session(session)
.contentType(MediaType.APPLICATION_JSON)
.content(jsonString));
resultats.andExpect(status().isOk());
// OPEN THE PORT
jsonString =
"{\"applicationName\":\""
+ applicationName
+ "\",\"portToOpen\":\"8080\",\"portNature\":\"web\"}";
resultats =
this.mockMvc.perform(
post("/application/ports")
.session(session)
.contentType(MediaType.APPLICATION_JSON)
.content(jsonString));
resultats.andExpect(status().isOk()).andDo(print());
} catch (Exception e) {
logger.error(e.getMessage());
}
ResultActions resultats =
mockMvc
.perform(
MockMvcRequestBuilders.fileUpload("/application/" + applicationName + "/deploy")
.file(
downloadAndPrepareFileToDeploy(
binary,
"https://github.com/Treeptik/CloudUnit/releases/download/1.0/"
+ binary))
.session(session)
.contentType(MediaType.MULTIPART_FORM_DATA))
.andDo(print());
resultats.andExpect(status().is2xxSuccessful());
String urlToCall =
"http://" + applicationName.toLowerCase() + "-johndoe-forward-8080.cloudunit.dev";
logger.debug(urlToCall);
int i = 0;
String content = null;
while (i++ < TestUtils.NB_ITERATION_MAX) {
content = getUrlContentPage(urlToCall);
logger.debug(content);
Thread.sleep(1000);
if (content == null || !content.contains("502")) {
break;
}
}
logger.debug(content);
if (content != null) {
Assert.assertTrue(content.contains("Greetings from Spring Boot!"));
}
}
