public Object getUnzippedReaderOrStreamFromName( String name, byte[] bytes, boolean allowZipStream, boolean forceInputStream, boolean isTypeCheckOnly, boolean doSpecialLoad, Map<String, Object> htParams) { String[] subFileList = null; String[] info = (bytes == null && doSpecialLoad ? getSpartanFileList(name) : null); String name00 = name; if (info != null) { if (isTypeCheckOnly) return info; if (info[2] != null) { String header = info[1]; Map<String, String> fileData = new Hashtable<String, String>(); if (info.length == 3) { // we need information from the output file, info[2] String name0 = getObjectAsSections(info[2], header, fileData); fileData.put("OUTPUT", name0); info = JmolBinary.spartanFileList(name, fileData.get(name0)); if (info.length == 3) { // might have a second option name0 = getObjectAsSections(info[2], header, fileData); fileData.put("OUTPUT", name0); info = JmolBinary.spartanFileList(info[1], fileData.get(name0)); } } // load each file individually, but return files IN ORDER SB sb = new SB(); if (fileData.get("OUTPUT") != null) sb.append(fileData.get(fileData.get("OUTPUT"))); String s; for (int i = 2; i < info.length; i++) { name = info[i]; name = getObjectAsSections(name, header, fileData); Logger.info("reading " + name); s = fileData.get(name); sb.append(s); } s = sb.toString(); if (spardirCache == null) spardirCache = new Hashtable<String, byte[]>(); spardirCache.put(name00.replace('\\', '/'), s.getBytes()); return JmolBinary.getBR(s); } // continuing... // here, for example, for an SPT file load that is not just a type check // (type check is only for application file opening and drag-drop to // determine if // script or load command should be used) } if (bytes == null && pngjCache != null) { bytes = JmolBinary.getCachedPngjBytes(this, name); if (bytes != null && htParams != null) htParams.put("sourcePNGJ", Boolean.TRUE); } String fullName = name; if (name.indexOf("|") >= 0) { subFileList = PT.split(name, "|"); if (bytes == null) Logger.info("FileManager opening 3 " + name); name = subFileList[0]; } Object t = (bytes == null ? getBufferedInputStreamOrErrorMessageFromName( name, fullName, true, false, null, !forceInputStream) : JmolBinary.getBIS(bytes)); try { if (t instanceof String) return t; if (t instanceof BufferedReader) return t; BufferedInputStream bis = JmolBinary.getUnzippedInputStream((BufferedInputStream) t); if (JmolBinary.isCompoundDocumentS(bis)) { JmolDocument doc = (JmolDocument) Interface.getOptionInterface("io2.CompoundDocument"); doc.setStream(bis, true); return JmolBinary.getBR(doc.getAllDataFiles("Molecule", "Input").toString()); } if (JmolBinary.isPickleS(bis)) return bis; bis = JmolBinary.checkPngZipStream(bis); if (JmolBinary.isZipS(bis)) { if (allowZipStream) return JmolBinary.newZipInputStream(bis); Object o = JmolBinary.getZipFileContents(bis, subFileList, 1, forceInputStream); return (o instanceof String ? JmolBinary.getBR((String) o) : o); } return (forceInputStream ? bis : JmolBinary.getBufferedReader(bis, null)); } catch (Exception ioe) { return ioe.toString(); } }