@Override
public boolean hasChanged(Field field) {
final Map<Integer, Field> savedFields = new HashMap<Integer, Field>();
if (field != null)
for (Field subfield : field.getFields()) savedFields.put(subfield.getId(), subfield);
for (StructureHolder holder : oneToMany.getSelected()) {
// Field has never been saved, if there are changes, let's save.
if (holder.getField() == null || holder.getField().getId() == 0) {
if (holder.hasChanged()) {
Debug.println("NEW: {0} says it has changed", holder.getStructure().getClass().getName());
return true;
} else return false;
} else {
// We are working with previously saved data that could have changed.
Field dataField = savedFields.remove(holder.getField().getId());
if (dataField == null) { // How??
Debug.println("OneToMany hasChanged badness, save to clean up.");
return true;
}
if (holder.getStructure().hasChanged(dataField)) {
Debug.println("OLD: {0} says it has changed", holder.getStructure().getClass().getName());
return true;
}
}
}
return !savedFields.isEmpty();
}
public static ClientUser buildUserFromProfile(NativeDocument profile, String username) {
NativeElement root = profile.getDocumentElement();
ClientUser currentUser = new ClientUser();
currentUser.setUsername(username);
// backwards compatibility for the moment...
if (root.getElementsByTagName("creds").getLength() != 0) {
Debug.println("Profile detected Old version...");
currentUser.setFirstName(root.getElementByTagName("first").getTextContent());
currentUser.setLastName(root.getElementByTagName("last").getTextContent());
currentUser.setAffiliation(root.getElementByTagName("affiliation").getTextContent());
} else {
Debug.println("Profile detected New shiny version!");
NativeNodeList nodes = root.getChildNodes();
for (int i = 0; i < nodes.getLength(); i++) {
NativeNode curNode = nodes.item(i);
if (curNode.getNodeType() != NativeNode.ELEMENT_NODE) continue;
String name = curNode.getNodeName();
if (name.equals(NewAccountPanel.EMAIL_KEY)) currentUser.setEmail(curNode.getTextContent());
else if (name.equals(NewAccountPanel.FIRSTNAME_KEY))
currentUser.setFirstName(curNode.getTextContent());
else if (name.equals(NewAccountPanel.LASTNAME_KEY))
currentUser.setLastName(curNode.getTextContent());
else if (name.equals(NewAccountPanel.AFFILIATION_KEY))
currentUser.setAffiliation(curNode.getTextContent());
else currentUser.setProperty(name, curNode.getTextContent());
}
if (root.getElementByTagName("quickGroup") == null)
currentUser.setProperty("quickGroup", "rlu");
}
return currentUser;
}
public static Document getField(String fieldName) {
final VFSPathToken token = new VFSPathToken(fieldName + ".xml");
if (SIS.get().getVFS().exists(FIELDS_DIR.child(token))) {
try {
return getInputStreamFile(SIS.get().getVFS().getInputStream(FIELDS_DIR.child(token)));
} catch (IOException e) {
Debug.println("Field {0} reported existence, but could not be loaded:\n{1}", fieldName, e);
}
}
return getInputStreamFile(DocumentLoader.class.getResourceAsStream(fieldName + ".xml"));
}
public static Document getView() {
final VFSPathToken token = new VFSPathToken("views.xml");
if (SIS.get().getVFS().exists(FIELDS_DIR.child(token))) {
try {
return SIS.get().getVFS().getMutableDocument(FIELDS_DIR.child(token));
} catch (IOException e) {
Debug.println("View reported existence, but could not be loaded:\n{0}", e);
}
}
return BaseDocumentUtils.impl.getInputStreamFile(
DocumentLoader.class.getResourceAsStream("views.xml"));
}
public static java.util.Iterator iterateInfratypeByQuery(
Session session, String condition, String orderBy) throws PersistentException {
StringBuffer sb = new StringBuffer("From Infratype as Infratype");
if (condition != null) sb.append(" Where ").append(condition);
if (orderBy != null) sb.append(" Order By ").append(orderBy);
try {
Query query = session.createQuery(sb.toString());
return query.iterate();
} catch (Exception e) {
Debug.println(e);
throw new PersistentException(e);
}
}
public static Infratype[] listInfratypeByQuery(Session session, String condition, String orderBy)
throws PersistentException {
StringBuffer sb = new StringBuffer("From Infratype as Infratype");
if (condition != null) sb.append(" Where ").append(condition);
if (orderBy != null) sb.append(" Order By ").append(orderBy);
try {
Query query = session.createQuery(sb.toString());
List list = query.list();
return (Infratype[]) list.toArray(new Infratype[list.size()]);
} catch (Exception e) {
Debug.println(e);
throw new PersistentException(e);
}
}
public void ensureEvaluated(WorkingSet workingSet) throws WorkflowManagerException {
final Collection<Assessment> assessments =
WorkflowManager.getAllAssessments(session, workingSet);
Debug.println("Ensuring evaluation on " + assessments.size() + " assessments...");
final String table = "RedListEvaluated";
final Collection<String> failedSpecies = new ArrayList<String>();
for (Assessment data : assessments) {
// final String uid = data.getAssessmentID() + "_" + AssessmentType.DRAFT_ASSESSMENT_TYPE;
final String uid = "" + data.getId();
final SelectQuery query = new SelectQuery();
query.select(table, "asm_id");
query.constrain(
new CanonicalColumnName(table, "is_evaluated"), QConstraint.CT_EQUALS, "true");
query.constrain(
QConstraint.CG_AND,
new CanonicalColumnName(table, "approval_status"),
QConstraint.CT_EQUALS,
Integer.valueOf(1));
query.constrain(
QConstraint.CG_AND, new CanonicalColumnName(table, "uid"), QConstraint.CT_EQUALS, uid);
final Row.Loader rl = new Row.Loader();
try {
ec.doQuery(query, rl);
} catch (DBException e) {
failedSpecies.add(data.getSpeciesName());
continue;
}
if (rl.getRow() == null) failedSpecies.add(data.getSpeciesName());
}
if (!failedSpecies.isEmpty()) {
final StringBuilder builder = new StringBuilder();
builder.append("The following species have not yet been marked as evaluted: ");
for (Iterator<String> iter = failedSpecies.iterator(); iter.hasNext(); )
builder.append(iter.next() + (iter.hasNext() ? ", " : ""));
throw new WorkflowManagerException(builder.toString());
}
}