private void writeResultsXml(GtaResult resultsObject) throws IOException {
String newAnResFileName =
FileUtil.findFreeFileName(
resultsfolder,
resultsfolder.getName() + "_" + modelReference.getFilename() + "_results",
"xml");
FileObject newAnResFile = resultsfolder.createData(newAnResFileName, "xml");
resultsObject.setSummary(new Summary());
resultsObject.getSummary().setFitModelCall(fitModelCall);
// TODO resolve problem with multiple modelcalls
resultsObject.getSummary().setInitModelCall(modelCalls.get(0));
for (int i = 0; i < relationsList.size(); i++) {
resultsObject.getDatasetRelations().add(new DatasetRelation());
resultsObject
.getDatasetRelations()
.get(i)
.setTo(String.valueOf((int) floor(relationsList.get(i)[0])));
resultsObject
.getDatasetRelations()
.get(i)
.setFrom(String.valueOf((int) floor(relationsList.get(i)[1])));
// TODO do this in a different way
// resultsObject.getDatasetRelations().get(i).getValues().add(relationsList.get(i)[2]);
String cmd =
timpcontroller.NAME_OF_RESULT_OBJECT
+ "$currTheta[["
+ (int) floor(relationsList.get(i)[0])
+ "]]@drel";
resultsObject.getDatasetRelations().get(i).getValues().add(timpcontroller.getDouble(cmd));
}
createAnalysisResultsFile(resultsObject, FileUtil.toFile(newAnResFile));
}
private void createAnalysisResultsFile(GtaResult resultsObject, File file) {
try {
javax.xml.bind.JAXBContext jaxbCtx =
javax.xml.bind.JAXBContext.newInstance(resultsObject.getClass().getPackage().getName());
javax.xml.bind.Marshaller marshaller = jaxbCtx.createMarshaller();
marshaller.setProperty(javax.xml.bind.Marshaller.JAXB_ENCODING, "UTF-8"); // NOI18N
marshaller.setProperty(javax.xml.bind.Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
marshaller.marshal(resultsObject, file);
} catch (javax.xml.bind.JAXBException ex) {
// XXXTODO Handle exception
java.util.logging.Logger.getLogger("global")
.log(java.util.logging.Level.SEVERE, null, ex); // NOI18N
}
}
private void writeResults(
TimpResultDataset[] results, GtaModelReference modelReference, String[] nlsprogressResult) {
Tgm model = getModel(modelReference);
GtaResult newResultsObject = new GtaResult();
String freeResultsFilename =
FileUtil.findFreeFileName(resultsfolder, resultsfolder.getName(), "summary");
try {
writeSummary(resultsfolder, freeResultsFilename);
} catch (IOException ex) {
Exceptions.printStackTrace(ex);
}
if (nlsprogressResult != null) {
for (int i = 0; i < nlsprogressResult.length; i++) {
NlsProgress progress = new NlsProgress();
progress.setRss(nlsprogressResult[i]);
newResultsObject.getNlsprogress().add(progress);
}
}
for (int i = 0; i < results.length; i++) {
TimpResultDataset timpResultDataset = results[i];
timpResultDataset.setType(datasets[i].getType());
newResultsObject.getDatasets().add(new Dataset());
newResultsObject.getDatasets().get(i).setDatasetFile(new OutputFile());
newResultsObject
.getDatasets()
.get(i)
.getDatasetFile()
.setFilename(datasetContainer.getDatasets().get(i).getFilename());
newResultsObject
.getDatasets()
.get(i)
.getDatasetFile()
.setPath(datasetContainer.getDatasets().get(i).getPath());
newResultsObject.getDatasets().get(i).getDatasetFile().setFiletype(datasets[i].getType());
newResultsObject.getDatasets().get(i).setId(String.valueOf(i + 1));
if (model.getDat().getIrfparPanel().getLamda() != null) {
timpResultDataset.setLamdac(model.getDat().getIrfparPanel().getLamda());
}
if (datasets[i].getType().equalsIgnoreCase("flim")) {
timpResultDataset.setOrheigh(datasets[i].getOriginalHeight());
timpResultDataset.setOrwidth(datasets[i].getOriginalWidth());
timpResultDataset.setIntenceIm(datasets[i].getIntenceIm().clone());
timpResultDataset.setMaxInt(datasets[i].getMaxInt());
timpResultDataset.setMinInt(datasets[i].getMinInt());
timpResultDataset.setX(datasets[i].getX().clone());
timpResultDataset.setX2(datasets[i].getX2().clone());
}
try {
String freeFilename =
FileUtil.findFreeFileName(
resultsfolder,
resultsfolder.getName() + "_d" + (i + 1) + "_" + timpResultDataset.getDatasetName(),
"timpres");
timpResultDataset.setDatasetName(freeFilename);
writeTo = resultsfolder.createData(freeFilename, "timpres");
ObjectOutputStream stream = new ObjectOutputStream(writeTo.getOutputStream());
stream.writeObject(timpResultDataset);
stream.close();
newResultsObject.getDatasets().get(i).setResultFile(new OutputFile());
newResultsObject.getDatasets().get(i).getResultFile().setFilename(freeFilename);
newResultsObject
.getDatasets()
.get(i)
.getResultFile()
.setPath(FileUtil.getRelativePath(project.getProjectDirectory(), resultsfolder));
} catch (IOException ex) {
Exceptions.printStackTrace(ex);
}
}
try {
writeResultsXml(newResultsObject);
} catch (IOException ex) {
Exceptions.printStackTrace(ex);
}
}