private int getTotalWork(
CheckWizardPage options, IPlottingSystem system, final IFunctionService funcService) {
try {
int ret = 1;
if (options.is(PersistWizardConstants.ORIGINAL_DATA)) {
Collection<ITrace> traces = system.getTraces();
ret += traces != null ? traces.size() : 0;
}
if (options.is(PersistWizardConstants.IMAGE_HIST)) {
final IToolPageSystem tsystem = (IToolPageSystem) system.getAdapter(IToolPageSystem.class);
final IToolPage tool = tsystem.getActiveTool();
if (tool != null
&& tool.getToolId().equals("org.dawb.workbench.plotting.tools.imageCompareTool")) {
final Map<String, IDataset> data = (Map<String, IDataset>) tool.getToolData();
if (data != null && !data.isEmpty()) {
ret += data.size();
}
}
}
final ITrace trace = system.getTraces().iterator().next();
if (options.is(PersistWizardConstants.MASK) && trace instanceof IImageTrace) {
IImageTrace image = (IImageTrace) trace;
final String name = options.getString(PersistWizardConstants.MASK);
if (image.getMask() != null) {
ret += 1;
}
}
final Collection<IRegion> regions = system.getRegions();
if (options.is(PersistWizardConstants.REGIONS) && regions != null && !regions.isEmpty()) {
ret += regions.size();
}
if (options.is(PersistWizardConstants.DIFF_META)) {
if (trace != null && trace instanceof IImageTrace && trace.getData() != null) {
ret += 1;
}
}
if (options.is(PersistWizardConstants.FUNCTIONS)) {
if (funcService != null) {
Map<String, IFunction> functions = funcService.getFunctions();
if (functions != null) ret += functions.size();
}
}
return ret;
} catch (Exception ne) {
logger.error("Cannot estimate work, assuming 100 things to do!", ne);
return 100;
}
}
public static IROI runConicPeakFit(
final IProgressMonitor monitor,
Display display,
final IPlottingSystem plotter,
IImageTrace t,
IParametricROI roi,
IParametricROI[] innerOuter,
int nPoints) {
if (roi == null) return null;
final ProgressMonitorWrapper mon = new ProgressMonitorWrapper(monitor);
monitor.subTask("Find POIs near initial ellipse");
Dataset image = (Dataset) t.getData();
BooleanDataset mask = (BooleanDataset) t.getMask();
PolylineROI points;
monitor.subTask("Fit POIs");
points = PeakFittingEllipseFinder.findPointsOnConic(image, mask, roi, innerOuter, nPoints, mon);
if (monitor.isCanceled()) return null;
if (points == null) return null;
if (roi instanceof EllipticalROI) {
if (points.getNumberOfPoints() < 3) {
throw new IllegalArgumentException("Could not find enough points to trim");
}
monitor.subTask("Trim POIs");
EllipticalFitROI efroi = PowderRingsUtils.fitAndTrimOutliers(mon, points, 5, false);
logger.debug("Found {}...", efroi);
monitor.subTask("");
return efroi;
}
return points;
}
