@Override
public RegistryResponseType documentRepositoryProvideAndRegisterDocumentSetB(
ProvideAndRegisterDocumentSetRequestType req) {
log.info("################ documentRepositoryProvideAndRegisterDocumentSetB called!");
RegistryResponseType rsp;
XDSDocument[] storedDocs = null;
URL registryURL = null;
String[] submUIDAndpatid = getSubmissionUIDandPatID(req.getSubmitObjectsRequest());
try {
if (submUIDAndpatid[1] == null)
throw new XDSException(
XDSException.XDS_ERR_REPOSITORY_METADATA_ERROR, "Missing patientID!", null);
String srcID = getSourceID(req);
registryURL = getRegistryWsdlUrl(srcID);
String groupID = getFsGroupID(submUIDAndpatid[1]);
logRequest(req);
List<ExtrinsicObjectType> extrObjs = checkRequest(req);
storedDocs = storeDocuments(req, extrObjs, groupID);
SubmitObjectsRequest submitRequest = req.getSubmitObjectsRequest();
rsp = dispatchSubmitObjectsRequest(submitRequest, registryURL);
} catch (Exception x) {
rsp = factory.createRegistryResponseType();
if (x instanceof XDSException) {
XDSUtil.addError(rsp, (XDSException) x);
} else {
XDSUtil.addError(
rsp,
new XDSException(
XDSException.XDS_ERR_REPOSITORY_ERROR,
"Unexpected error in XDS service !: " + x.getMessage(),
x));
}
}
boolean success = XDSConstants.XDS_B_STATUS_SUCCESS.equals(rsp.getStatus());
AuditRequestInfo info = new AuditRequestInfo(LogHandler.getInboundSOAPHeader(), wsContext);
if (storedDocs != null) {
XDSAudit.logRepositoryPnRExport(
submUIDAndpatid[0], submUIDAndpatid[1], info, registryURL, success);
}
commit(storedDocs, success);
if (!success) ejbContext.setRollbackOnly();
XDSAudit.logRepositoryImport(
submUIDAndpatid[0],
submUIDAndpatid[1],
info,
XDSConstants.XDS_B_STATUS_SUCCESS.equals(rsp.getStatus()));
log.info("################ documentRepositoryProvideAndRegisterDocumentSetB finished!");
return rsp;
}
protected void addFromToMatch(
BooleanBuilder builder,
StoredQueryParam fromParam,
StoredQueryParam toParam,
NumberPath<Long> subselectJoinPk,
String slotName) {
String from =
fromParam == null ? null : XDSUtil.normalizeDTM(fromParam.getStringValue(), false);
String to = toParam == null ? null : XDSUtil.normalizeDTM(toParam.getStringValue(), true);
if (from != null || to != null) {
Predicate fromTo =
from == null
? QSlot.slot.value.loe(to)
: to != null
? ExpressionUtils.allOf(QSlot.slot.value.goe(from), QSlot.slot.value.loe(to))
: QSlot.slot.value.goe(from);
builder.and(
new JPASubQuery()
.from(QSlot.slot)
.where(QSlot.slot.parent.pk.eq(subselectJoinPk), QSlot.slot.name.eq(slotName), fromTo)
.exists());
}
}
public static void logQuery(
EventTypeCode eventTypeCode,
AdhocQueryRequest req,
String srcUserID,
String altSrcUserID,
String srcHostName,
String destUserID,
String altDestUserID,
String destHostName,
boolean success) {
if (logger != null && logger.isInstalled()) {
try {
AdhocQueryType qry = req.getAdhocQuery();
String patID = XDSUtil.getQueryPatID(qry.getSlot());
String homeCommunityID =
InfosetUtil.getSlotValue(qry.getSlot(), XDSConstants.QRY_HOME_COMMUNITY_ID, null);
if (srcHostName == null) srcHostName = AuditLogger.localHost().getHostName();
Calendar timeStamp = logger.timeStamp();
AuditMessage msg =
XDSAudit.createQuery(
eventTypeCode,
qry.getId(),
patID,
homeCommunityID,
InfosetUtil.marshallObject(req, true).getBytes("UTF-8"),
srcUserID,
altSrcUserID,
srcHostName,
destUserID,
altDestUserID,
destHostName,
timeStamp,
success ? EventOutcomeIndicator.Success : EventOutcomeIndicator.MinorFailure);
sendAuditMessage(timeStamp, msg);
} catch (Exception e) {
log.warn("Audit log of Stored Query failed!");
log.debug("AuditLog Exception:", e);
}
}
}
@Override
public RetrieveDocumentSetResponseType documentRepositoryRetrieveDocumentSet(
RetrieveDocumentSetRequestType req) {
log.info("################ documentRepositoryRetrieveDocumentSet called!");
RetrieveDocumentSetResponseType rsp = iheFactory.createRetrieveDocumentSetResponseType();
try {
String repositoryUID = getRepositoryUniqueId();
String docUid, reqRepoUid;
XDSDocument doc;
RetrieveDocumentSetResponseType.DocumentResponse docRsp;
List<String> retrievedUIDs = new ArrayList<String>();
int requestCount = req.getDocumentRequest().size();
RegistryErrorList regErrors = factory.createRegistryErrorList();
List<RegistryError> mainErrors = regErrors.getRegistryError();
for (DocumentRequest docReq : req.getDocumentRequest()) {
reqRepoUid = docReq.getRepositoryUniqueId();
docUid = docReq.getDocumentUniqueId();
if (reqRepoUid == null
|| docUid == null
|| reqRepoUid.trim().length() == 0
|| docUid.trim().length() == 0) {
mainErrors.add(
XDSUtil.getRegistryError(
XDSException.XDS_ERR_SEVERITY_ERROR,
XDSException.XDS_ERR_REPOSITORY_ERROR,
"Missing required request parameter! (Repository- or Document Unique ID)",
null));
continue;
}
if (reqRepoUid.equals(repositoryUID)) {
doc = retrieveDocument(docUid);
if (doc != null) {
try {
docRsp = getDocumentResponse(doc, getRepositoryUniqueId());
rsp.getDocumentResponse().add(docRsp);
retrievedUIDs.add(docUid);
} catch (IOException e) {
String msg = "Error in building DocumentResponse for document:" + doc;
log.error(msg);
mainErrors.add(
XDSUtil.getRegistryError(
XDSException.XDS_ERR_SEVERITY_ERROR,
XDSException.XDS_ERR_REPOSITORY_ERROR,
msg,
docUid));
}
} else {
String msg = "Document not found! document UID:" + docUid;
log.warn(msg);
mainErrors.add(
XDSUtil.getRegistryError(
XDSException.XDS_ERR_SEVERITY_ERROR,
XDSException.XDS_ERR_DOCUMENT_UNIQUE_ID_ERROR,
msg,
docUid));
}
} else {
String msg =
"DocumentRepositoryUID="
+ reqRepoUid
+ " is unknown! This repository unique ID:"
+ repositoryUID;
log.warn(msg);
mainErrors.add(
XDSUtil.getRegistryError(
XDSException.XDS_ERR_SEVERITY_ERROR,
XDSException.XDS_ERR_UNKNOWN_REPOSITORY_ID,
msg,
docUid));
}
}
RegistryResponseType regRsp = factory.createRegistryResponseType();
int nrOfDocs = rsp.getDocumentResponse().size();
if (nrOfDocs == 0) {
if (mainErrors.size() == 0)
throw new XDSException(
XDSException.XDS_ERR_DOCUMENT_UNIQUE_ID_ERROR,
"None of the requested documents were found. This repository unique ID "
+ repositoryUID,
null);
regRsp.setStatus(XDSConstants.XDS_B_STATUS_FAILURE);
} else if (nrOfDocs < requestCount) {
regRsp.setStatus(XDSConstants.XDS_B_STATUS_PARTIAL_SUCCESS);
} else {
regRsp.setStatus(XDSConstants.XDS_B_STATUS_SUCCESS);
}
if (mainErrors.size() > 0) {
regRsp.setRegistryErrorList(regErrors);
}
rsp.setRegistryResponse(regRsp);
} catch (Exception x) {
if (x instanceof XDSException) {
XDSUtil.addError(rsp, (XDSException) x);
} else {
XDSUtil.addError(
rsp,
new XDSException(
XDSException.XDS_ERR_REPOSITORY_ERROR,
"Unexpected error in XDS service !: " + x.getMessage(),
x));
}
}
AuditRequestInfo info = new AuditRequestInfo(LogHandler.getInboundSOAPHeader(), wsContext);
XDSAudit.logRepositoryRetrieveExport(req, rsp, info);
log.info("################ documentRepositoryRetrieveDocumentSet finished!");
return rsp;
}