public static void main(String[] args) throws IOException {
Graph graphSt;
Graph graphExp;
GiovannisAnalysis finder;
Dataset1 dataset = Dataset1.THCA;
int depth = 3;
double fdrThr = 0.01;
graphSt = PathwayCommons.getGraph(SIFEnum.CONTROLS_STATE_CHANGE_OF);
graphExp = PathwayCommons.getGraph(SIFEnum.CONTROLS_EXPRESSION_OF);
graphExp.merge(MSigDBTFT.getGraph());
finder = new GiovannisAnalysis(graphSt, graphExp, dataset, depth, fdrThr);
checkZeros(finder.expMan);
finder.find();
}
