示例#1
0
  private void initializeVcfWriter() {
    final List<String> inputNames = Arrays.asList(validation.getName());

    // setup the header fields
    Set<VCFHeaderLine> hInfo = new HashSet<VCFHeaderLine>();
    hInfo.addAll(VCFUtils.getHeaderFields(getToolkit(), inputNames));
    hInfo.add(
        new VCFFilterHeaderLine(
            "bootstrap",
            "This site used for genotype bootstrapping with ProduceBeagleInputWalker"));

    bootstrapVCFOutput.writeHeader(
        new VCFHeader(hInfo, SampleUtils.getUniqueSamplesFromRods(getToolkit(), inputNames)));
  }