public BondLocation(List<Location> subLocations) {
super();
Location min = Tools.getMin(subLocations);
Location max = Tools.getMax(subLocations);
setStart(min.getStart());
setEnd(max.getEnd());
setStrand(Strand.UNDEFINED);
setSubLocations(subLocations);
assertLocation();
}
@Override
protected final void assertLocation() {
for (Location l : this) {
Point start = l.getStart();
Point end = l.getEnd();
if (!start.equals(end)) {
throw new IllegalStateException(
"The start "
+ start
+ " is not equal to the end "
+ end
+ ". bond locations must be a single "
+ "compound long");
}
}
}
public OneOfLocation(List<Location> locations) {
super();
if (locations.isEmpty()) {
throw new IllegalArgumentException("Need locations to build a OneOfLocation");
}
Location l = locations.get(0);
setStart(l.getStart());
setEnd(l.getEnd());
setStrand(l.getStrand());
setBetweenCompounds(l.isBetweenCompounds());
setCircular(l.isCircular());
setSubLocations(locations);
}