public void basicLoad() {
try {
PDBFileReader reader = new PDBFileReader();
// the path to the local PDB installation
reader.setPath("/tmp");
// are all files in one directory, or are the files split,
// as on the PDB ftp servers?
reader.setPdbDirectorySplit(true);
// should a missing PDB id be fetched automatically from the FTP servers?
reader.setAutoFetch(true);
// configure the parameters of file parsing
FileParsingParameters params = new FileParsingParameters();
// should the ATOM and SEQRES residues be aligned when creating the internal data model?
params.setAlignSeqRes(true);
// should secondary structure get parsed from the file
params.setParseSecStruc(false);
reader.setFileParsingParameters(params);
Structure structure = reader.getStructureById("4hhb");
System.out.println(structure);
Chain c = structure.getChainByPDB("C");
System.out.print(c);
System.out.println(c.getHeader());
} catch (Exception e) {
e.printStackTrace();
}
}
