public String transform(String message) {
String rv = message;
try {
log.debug("in=" + message);
// decode the message
org.jengine.tools.hl7.Message msg =
org.jengine.tools.hl7.Message.read(new java.io.StringReader(message));
// pass the decoded message to beanshell
interpreter.eval("org.jengine.tools.hl7.Message message");
interpreter.set("message", msg);
// pass the logging category to beanshell
interpreter.eval("org.apache.log4j.Category log");
interpreter.set("log", log);
// call the script
interpreter.eval(script);
// encode the possibly modified message
java.io.StringWriter sw = new java.io.StringWriter();
msg.write(sw);
rv = sw.toString();
log.debug("out=" + rv);
} catch (Exception e) {
log.error("Problem processing transformation", e);
}
return rv;
}
private void redirectToPrevUrl(String homePage) throws UnsupportedEncodingException, IOException {
String prevURLobject = (String) request.getSession().getAttribute(ClientConstants.loginRequest);
String prevURL = null;
// if you are in an application and your session expired, when you click
// there the next time the login
// page will appear and then you will be redirected to the page you HAD
// OPEN
//
// but if you log out , the prev page is logOut so you are sent back
// || !page.equalsIgnoreCase("logout"))
if (prevURLobject == null || prevURLobject.indexOf("logout") != -1) {
prevURL = ClientConstants.servletPage;
log.info("prevURL was null");
} else {
prevURL = prevURLobject;
log.info("prevURL " + prevURL);
}
if (prevURL.length() > 0) {
log.info("About to redirect to " + prevURL);
Command.redirectToURL(request, response, prevURL);
} else {
Command.redirectToURL(request, response, homePage);
}
}
public static synchronized IdentifierExpertSystem instance() {
if (chemistryKernel == null) {
if (logger.isDebugEnabled()) {
logger.debug("Getting " + IdentifierExpertSystem.class.getName() + " instance.");
}
chemistryKernel = new IdentifierExpertSystem();
}
return chemistryKernel;
}
/**
* Description of the Method
*
* @return Description of the Return Value
*/
public static synchronized BasicResidueData instance() {
if (residueData == null) {
if (logger.isDebugEnabled()) {
logger.debug("Getting " + BasicResidueData.class.getName() + " instance.");
}
residueData = new BasicResidueData();
}
return residueData;
}
public LogP() {
if (logger.isDebugEnabled()) {
logger.debug("Initialize " + this.getClass().getName());
}
descInfo =
FeatureHelper.generateFeatureInfo(
this.getClass(),
BasicFeatureInfo.TYPE_NO_COORDINATES,
null,
"joelib2.feature.result.DoubleResult");
}
/*
* Only current solution available to detect
* if log4j is truly configured.
*/
private static boolean isLog4jConfigured() {
Enumeration en = org.apache.log4j.LogManager.getRootLogger().getAllAppenders();
if (!(en instanceof org.apache.log4j.helpers.NullEnumeration)) {
return true;
} else {
Enumeration cats = Category.getCurrentCategories();
while (cats.hasMoreElements()) {
Category c = (Category) cats.nextElement();
if (!(c.getAllAppenders() instanceof org.apache.log4j.helpers.NullEnumeration)) return true;
}
}
return false;
}
/** See if the data was correctly added. */
public void verifyDataTest() {
int iCount = 0;
cat.debug("Count records.\n");
try {
// testTable.setKeyArea(Constants.MAIN_KEY_AREA);
iCount = 0;
testTable.close();
while (testTable.hasNext()) {
testTable.next();
cat.debug(record.toString());
iCount++;
this.verifyRecord(record, iCount);
assertTrue(((Integer) record.getField(0).getData()).intValue() == iCount);
}
} catch (Exception e) {
fail("Record count error");
}
assertTrue(iCount == 6);
cat.debug("Count records backwards.\n");
iCount = 6;
try {
// testTable.setKeyArea(Constants.MAIN_KEY_AREA);
testTable.close();
while (testTable.hasPrevious()) {
testTable.previous();
this.verifyRecord(record, iCount);
cat.debug(record.toString());
assertTrue(((Integer) record.getField(0).getData()).intValue() == iCount);
iCount--;
}
} catch (Exception e) {
fail("Record count error");
}
// assertTrue(iCount == 0);
cat.debug("Seek records.\n");
iCount = 1;
try {
// testTable.setKeyArea(Constants.MAIN_KEY_AREA);
while (iCount < 10) {
record.getField(0).setData(new Integer(iCount));
boolean bSuccess = testTable.seek("=");
if (bSuccess) {
assertTrue(iCount <= 6);
this.verifyRecord(record, iCount);
cat.debug(record.toString());
assertTrue(((Integer) record.getField(0).getData()).intValue() == iCount);
} else {
cat.debug("" + iCount);
cat.debug(record.toString());
assertTrue(iCount > 6);
}
iCount++;
}
} catch (Exception e) {
fail("Record count error");
}
}
public static IShawnProcess create() throws Exception {
log.debug("Creating shawn instance with default values");
IShawnProcess s = null;
if (defaultValues.isDryRun()) {
log.info("Creating dry run shawn instance");
s = new DryRunShawnProcess();
} else {
log.info("Creating local process shawn instance");
s = new ShawnProcess(defaultValues.getShawnExecutable(), defaultValues.getWorkDir());
}
shawns.add(s);
return s;
}
/** Process the start tag */
public int doStartTag() throws javax.servlet.jsp.JspException {
// Look up the requested property value
if (name != null) {
Object beanValue = RequestUtils.lookup(pageContext, name, property, scope);
if (cat.isDebugEnabled()) cat.debug("Value is : '" + beanValue + "'");
if (beanValue == null) return (EVAL_BODY_TAG);
// set the property as value
setValue(beanValue.toString());
}
// Continue processing this page
return (EVAL_BODY_TAG);
}
public class RETSServerInformationTransaction extends RETSTransaction {
/** */
private static final long serialVersionUID = 9214592476498826752L;
static Category cat = Category.getInstance(RETSServerInformationTransaction.class);
String version = null;
/** constructor */
public RETSServerInformationTransaction() {
super();
setRequestType("ServerInformation");
}
public void setResource(String str) {
setRequestVariable("Resource", str);
}
public void setInfoClass(String str) {
setRequestVariable("Class", str);
}
public void setStandardNames(String str) {
setRequestVariable("StandardNames", str);
}
public void setVersion(String version) {
this.version = version;
}
public String getVersion() {
return version;
}
}
public class Log4JTest {
// Create a category instance for this class
static Category cat = Category.getInstance(Log4JTest.class.getName());
public static void main(String[] args) {
// Ensure to have all necessary drivers installed !
try {
Driver d = (Driver) (Class.forName("oracle.jdbc.driver.OracleDriver").newInstance());
DriverManager.registerDriver(d);
} catch (Exception e) {
}
// Set the priority which messages have to be logged
cat.setPriority(Priority.INFO);
// Configuration with configuration-file
PropertyConfigurator.configure("log4jtestprops.txt");
// These messages with Priority >= setted priority will be logged to the database.
cat.debug("debug"); // this not, because Priority DEBUG is less than INFO
cat.info("info");
cat.error("error");
cat.fatal("fatal");
}
}
public sf.inventory.HargaJual getLatestHargaJual(String kbarang, String tglBukti)
throws DAException {
try {
String strSQL =
"SELECT a.*,b.nbarang,b.satuan FROM mhjual a,mproduk b where a.recstatus<>? and a.kbarang=b.kbarang and a.kbarang=? and a.ktanggal <=? order by a.ktanggal desc LIMIT 0,1";
log.info(strSQL + "[0]" + kbarang + ",[1]" + tglBukti);
PreparedStatement p = db.getStatement(strSQL);
p.setString(1, "D");
p.setString(2, kbarang);
p.setString(3, tglBukti);
Vector rows = db.getData(p);
Vector v = (Vector) rows.get(0);
sf.inventory.HargaJual item = new sf.inventory.HargaJual();
item.setKbarang(v.get(0).toString());
item.setKtanggal(v.get(1).toString());
item.setKvaluta(v.get(2).toString());
item.setNvaluta(Double.parseDouble(v.get(3).toString()));
item.setPotongan(Double.parseDouble(v.get(4).toString()));
item.setRecstatus(v.get(5).toString());
item.setTglupdate(Long.parseLong(v.get(6).toString()));
item.setUserupdate(v.get(7).toString());
item.setNbarang(v.get(8).toString());
item.setSatuan(v.get(9).toString());
return item;
} catch (Exception ex) {
throw new DAException(ex.getLocalizedMessage());
}
}
public void addHardCodedKernel(IdentifierHardDependencies hardCodedKernel) {
String kernelString =
hardCodedKernel.getClass().getName()
+ " "
+ hardCodedKernel.getVendorInternal()
+ " "
+ hardCodedKernel.getReleaseVersionInternal()
+ " "
+ hardCodedKernel.getReleaseDateInternal();
if (logger.isDebugEnabled()) {
logger.debug("hard dependencies: " + kernelString);
}
hardInfos.put(CML_HARD_KERNEL + ":" + hardCodedKernel.getClass().getName(), kernelString);
}
private void redirectDuoAuth(
Principal principal,
HttpServletRequest httpServletRequest,
HttpServletResponse httpServletResponse,
String contextPath)
throws java.io.IOException {
// Redirect to servlet if we can. If the request is committed,
// we can't, possibly because there's already a redirection in
// progress; this is what Seraph's SecurityFilter does.
if (!httpServletResponse.isCommitted()) {
String sigRequest = DuoWeb.signRequest(ikey, skey, akey, principal.getName());
final String originalURL =
contextPath
+ httpServletRequest.getServletPath()
+ (httpServletRequest.getPathInfo() == null ? "" : httpServletRequest.getPathInfo())
+ (httpServletRequest.getQueryString() == null
? ""
: "?" + httpServletRequest.getQueryString());
String qs;
String redirectUrl;
qs = DUO_REQUEST_KEY + "=" + URLEncoder.encode(sigRequest, "UTF-8");
qs = qs + "&" + DUO_HOST_KEY + "=" + URLEncoder.encode(host, "UTF-8");
qs = qs + "&" + DUO_ORIGINAL_URL_KEY + "=" + URLEncoder.encode(originalURL, "UTF-8");
redirectUrl = contextPath + loginUrl + "?" + qs;
httpServletResponse.sendRedirect(redirectUrl);
} else {
log.warn("Could not redirect to Duo auth page.");
}
}
@Override
public LinkedList<ShawnResult> runCommand(String cmd, String params) {
String cmdLine = toCommandLine(cmd, params);
storeCommandInHistory(cmdLine);
log.debug("Sending line to shawn: " + cmdLine);
return new LinkedList<ShawnResult>();
}
/**
* Returns complete composite object, if applicable, by searching the database key on the <code>
* List</code> object of <code>PersistentObject</code>s that contains an encoded key (<code>
* PersistentObject.getEncodedKey()</code>).
*
* @param list <code>List</code> of objects to search.
* @param encodedKey key obtained via <code>PersistentObject.getEncodedKey()</code>.
* @return object that matches encoded key or <code>null</code> if not found.
* @see net.sf.jrf.domain.PersistentObject#getEncodedKey()
* @see #findIndexByKey(List,String)
*/
public PersistentObject findByKey(List list, String encodedKey) {
PersistentObject po = getPoInList(list, encodedKey);
if (po == null) {
LOG.error("findByKey(List," + encodedKey + ") called without key on the list.");
return null;
}
return findByKey(po);
}
/**
* Method addKeyStore
*
* @param keyStore
*/
public void add(KeyStore keyStore) {
try {
this.add(new KeyStoreResolver(keyStore));
} catch (StorageResolverException ex) {
cat.error("Could not add KeyStore because of: ", ex);
}
}
/**
* Get all log classes names
*
* @return
*/
public static Map<String, Object> getLogClasses() {
SortedMap<String, Object> loggers = new TreeMap<String, Object>();
Map<String, Object> res =
Objects.newHashMap(
"level",
LogManager.getRootLogger().getLevel().toString().toUpperCase(),
"loggers",
loggers);
Enumeration<Category> en = LogManager.getCurrentLoggers();
while (en.hasMoreElements()) {
Category e = en.nextElement();
loggers.put(e.getName(), e.getEffectiveLevel().toString().toUpperCase());
}
return res;
}
static {
try {
_address = InetAddress.getLocalHost();
} catch (java.net.UnknownHostException e) {
cat.fatal("ERROR: unable to get localhost information. UUIDs will not be unique.", e);
System.exit(-1);
}
}
/** archives and removes a project from the framework */
public class RemoveAction extends BaseAction {
static Category logger = Category.getInstance(CreateAction.class.getName());
private final StringBuffer unsetupArgs = new StringBuffer();
/**
* Create a new RemoveAction and parse the arguments from a {@link
* org.apache.commons.cli.CommandLine}
*
* @param main
* @param framework
* @param cli
*/
public RemoveAction(final CLIToolLogger main, final Framework framework, final CommandLine cli) {
this(main, framework, BaseAction.parseBaseActionArgs(cli));
}
/**
* Create a new RemoveAction with argument specifiers
*
* @param main
* @param framework framework object
* @param baseArgs base args
* @param args RemoveAction args
*/
public RemoveAction(
final CLIToolLogger main, final Framework framework, final BaseActionArgs baseArgs) {
super(main, framework, baseArgs);
initArgs();
}
private void initArgs() {
unsetupArgs.append("-name ");
unsetupArgs.append(project.getFrameworkProject());
}
/**
* Execute the action.
*
* @throws Throwable
*/
public void exec() throws Throwable {
// super.exec();
// if (project == null) {
// throw new IllegalStateException("project was null");
// }
// if
// (!framework.getFrameworkProjectMgr().existsFrameworkProject(project.getFrameworkProject())) {
// throw new ProjectToolException("project does not exists: " +
// project.getFrameworkProject());
// }
// main.verbose("removing project: " + project.getFrameworkProject());
// final FrameworkProject d =
// framework.getFrameworkProjectMgr().createFrameworkProject(project.getFrameworkProject());
throw new RuntimeException("unimplemented: RemoveAction.exec");
}
}
public class ItemMetaData implements Serializable, ItemMetaDataIfc {
static Category errorLogger = Category.getInstance("errorLogger");
private static final long serialVersionUID = 7526471155622776147L;
private Long id;
private ItemDataIfc item;
private String label;
private String entry;
public ItemMetaData() {}
public ItemMetaData(ItemDataIfc item, String label, String entry) {
this.item = item;
this.label = label;
this.entry = entry;
}
public Long getId() {
return id;
}
public void setId(Long id) {
this.id = id;
}
public ItemDataIfc getItem() {
return item;
}
public void setItem(ItemDataIfc item) {
this.item = item;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public String getEntry() {
return entry;
}
public void setEntry(String entry) {
this.entry = entry;
}
private void writeObject(java.io.ObjectOutputStream out) throws IOException {
out.defaultWriteObject();
}
private void readObject(java.io.ObjectInputStream in) throws IOException, ClassNotFoundException {
in.defaultReadObject();
}
}
public class EchoBean implements SessionBean {
private static final Category log = Category.getInstance(EchoBean.class);
private SessionContext sessionCtx;
public void ejbCreate() {
log.debug("ejbCreate: ");
}
public void ejbLoad() {
log.debug("ejbLoad");
}
public void ejbRemove() {
log.debug("ejbRemove");
}
public void ejbStore() {
log.debug("ejbStore");
}
public void setSessionContext(SessionContext context) {
sessionCtx = context;
log.debug("setSessionContext");
}
public void unsetSessionContext() {
sessionCtx = null;
log.debug("unsetSessionContext");
}
public void ejbActivate() {
log.debug("ejbActivate");
}
public void ejbPassivate() {
log.debug("ejbPassivate");
}
public String echo(String arg) {
log.info("echo, arg=" + arg);
try {
InitialContext ctx = new InitialContext();
Object ref = ctx.lookup("java:comp/env/ra/DirContextFactory");
log.info("echo, ra/DirContextFactory=" + ref);
DirContextFactory dcf = (DirContextFactory) ref;
log.info("echo, found dcf=" + dcf);
DirContext dc = dcf.getConnection();
log.info("echo, lookup dc=" + dc);
dc.close();
} catch (NamingException e) {
log.error("Failed during JNDI access", e);
}
return arg;
}
}
public void addSoftCodedKernel(IdentifierSoftDependencies softCodedKernel) {
String kernelString =
softCodedKernel.getClass().getName()
+ " "
+ softCodedKernel.getVendorExternal()
+ " "
+ softCodedKernel.getResourceExternal()
+ " "
+ softCodedKernel.getReleaseVersionExternal()
+ " "
+ softCodedKernel.getReleaseDateExternal();
if (logger.isDebugEnabled()) {
logger.debug("soft dependencies : " + kernelString);
}
softInfos.put(CML_SOFT_KERNEL + ":" + softCodedKernel.getClass().getName(), kernelString);
}
public String echo(String arg) {
log.info("echo, arg=" + arg);
try {
InitialContext ctx = new InitialContext();
Object ref = ctx.lookup("java:comp/env/ra/DirContextFactory");
log.info("echo, ra/DirContextFactory=" + ref);
DirContextFactory dcf = (DirContextFactory) ref;
log.info("echo, found dcf=" + dcf);
DirContext dc = dcf.getConnection();
log.info("echo, lookup dc=" + dc);
dc.close();
} catch (NamingException e) {
log.error("Failed during JNDI access", e);
}
return arg;
}
protected void tearDown() throws Exception {
// Required to prevent each message being logged once for each test
// that has run in the past - this generates a huge log output and
// seems to crash JUnit reporting with an OutOfMemoryError.
// Maybe we should put this in the servlet destroy() but the version of
// Servlet Unit we are using has no way to shut down servlets - later
// versions do appear to have this.
Category.shutdown();
super.tearDown();
}
public synchronized String getNewUUID() {
UID uid = new UID();
String s = "";
if (_address != null) {
byte[] b = _address.getAddress();
for (int i = 0; i < b.length; i++) s += (new Byte(b[i])).longValue() + "-";
}
s += uid.toString();
cat.debug("new UUID: " + s);
return s;
}
public static String stackTrace(Throwable t) {
StringWriter sw = new StringWriter();
t.printStackTrace(new PrintWriter(sw));
String s = sw.toString();
try {
sw.close();
} catch (IOException e) {
cat.error("::stackTrace - cannot close the StringWriter object", e);
}
return s;
}
/**
* This method returns all attributes of a given Classifier, including inherited
*
* @param classifier the classifier you want to have the attributes for
* @return a collection of the attributes
*/
public Collection getAttributesInh(MClassifier classifier) {
Collection result = new ArrayList();
result.addAll(getAttributes(classifier));
Iterator parents = classifier.getParents().iterator();
while (parents.hasNext()) {
MClassifier parent = (MClassifier) parents.next();
cat.debug("Adding attributes for: " + parent);
result.addAll(getAttributesInh(parent));
}
return result;
}
private String preauthWithRetries(int num_tries, Principal principal)
throws javax.servlet.ServletException {
// Check if Duo authentication is even necessary by calling preauth
for (int i = 0; ; i++) {
try {
Response preAuthResponse = sendPreAuthRequest(principal.getName());
int statusCode = preAuthResponse.code();
if (statusCode / 100 == 5) {
if (failOpen) {
log.warn("Duo 500 error. Fail open for user:"******"FAILOPEN";
}
}
// parse response
JSONObject json = new JSONObject(preAuthResponse.body().string());
if (!json.getString("stat").equals("OK")) {
throw new ServletException(
"Duo error code (" + json.getInt("code") + "): " + json.getString("message"));
}
String result = json.getJSONObject("response").getString("result");
if (result.equals("allow")) {
log.info("Duo 2FA bypass for user:"******"ALLOW";
}
break;
} catch (java.io.IOException e) {
if (i >= MAX_TRIES - 1) {
if (failOpen) {
log.warn("Duo server unreachable. Fail open for user:"******"FAILOPEN";
} else {
throw new ServletException(e);
}
}
} catch (Exception e) {
throw new ServletException(e);
}
}
return "AUTH";
}
/**
* Returns the bytes per character used for the given characterset in oracle
*
* @param charset charset to query
* @return bytes per character
*/
private int getBytes_per_Character(String charset) {
// see
// http://otn.oracle.com/docs/products/oracle8i/doc_library/817_doc/server.817/a76966/appa.htm#958278
OracleCharsets ocharsets = new OracleCharsets();
try {
return ocharsets.getBytes_per_charset(charset);
} catch (UndefinedCharSetException ex) {
// for undefined charsets return 1 (request for any better solution)
LOG.info("Character set " + charset + " is unknown; assumming 1 byte per character.");
return 1;
}
}