public int run(String[] args) throws Exception {
    Configuration argConf = getConf();

    // JobConf conf = new JobConf(diffdb.class);
    Configuration config = HBaseConfiguration.create();
    HBaseAdmin hbAdmin = new HBaseAdmin(config);
    dbutil db_util = new dbutil(config);

    HTable runTable = new HTable(config, "gestore_runs");
    Get runGet = new Get(argConf.get("id").getBytes());
    Result pipeline = runTable.get(runGet);

    NavigableMap<byte[], byte[]> pipeMap = pipeline.getFamilyMap("d".getBytes());

    Map.Entry<byte[], byte[]> results = pipeMap.pollFirstEntry();

    HashMap<String, HashMap<String, String>> resultMap =
        new HashMap<String, HashMap<String, String>>();

    while (results != null) {
      String resultKey = new String(results.getKey());
      String resultValue = new String(results.getValue());
      String field = "type";
      HashMap<String, String> tempMap = new HashMap<String, String>();
      String entry = resultKey;

      if (resultKey.endsWith("_db_timestamp")) {
        field = "db_timestamp";
        entry = resultKey.substring(0, resultKey.lastIndexOf("_db_timestamp"));
      } else if (resultKey.endsWith("_filename")) {
        field = "filename";
        entry = resultKey.substring(0, resultKey.lastIndexOf("_filename"));
      } else if (resultKey.endsWith("_regex")) {
        field = "regex";
        entry = resultKey.substring(0, resultKey.lastIndexOf("_regex"));
      }

      if (resultMap.containsKey(entry)) {
        tempMap = resultMap.get(entry);
      }

      tempMap.put(field, resultValue);
      resultMap.put(entry, tempMap);

      // System.out.println("Key: " + resultKey + " Value: " + resultValue);
      results = pipeMap.pollFirstEntry();
    }

    for (String key : resultMap.keySet()) {
      System.out.println("File ID: " + key);
      for (String subKey : resultMap.get(key).keySet()) {
        // System.out.println("\t " + subKey + "\t\t" + resultMap.get(key).get(subKey));
        System.out.format("  %1$-20s  %2$s\n", subKey, resultMap.get(key).get(subKey));
      }
    }

    return 0;
  }
 protected void setup(Context context) {
   Configuration config = context.getConfiguration();
   inMovies = config.get("inParameter");
 }
示例#3
0
  /** Sets up configuration based on params */
  private static boolean setup(Hashtable<String, String> curConf, Configuration argConf) {

    if (argConf.get("file") == null) {
      logger.fatal("Missing file parameter");
      System.exit(1);
    }

    if (argConf.get("hdfs_base_path") == null) {
      logger.fatal("Missing HDFS base path, check gestore-conf.xml");
      System.exit(1);
    }

    if (argConf.get("hdfs_temp_path") == null) {
      logger.fatal("Missing HDFS temp path, check gestore-conf.xml");
      System.exit(1);
    }

    if (argConf.get("local_temp_path") == null) {
      logger.fatal("Missing local temp path, check gestore-conf.xml");
      System.exit(1);
    }

    // Input paramaters
    curConf.put("run_id", argConf.get("run", ""));
    curConf.put("task_id", argConf.get("task", ""));
    curConf.put("file_id", argConf.get("file"));
    curConf.put("local_path", argConf.get("path", ""));
    curConf.put("type", argConf.get("type", "l2r"));
    curConf.put("timestamp_start", argConf.get("timestamp_start", "1"));
    curConf.put(
        "timestamp_stop", argConf.get("timestamp_stop", Integer.toString(Integer.MAX_VALUE)));
    curConf.put("delimiter", argConf.get("regex", "ID=.*"));
    curConf.put("taxon", argConf.get("taxon", "all"));
    curConf.put("intermediate", argConf.get("full_run", "false"));
    curConf.put("quick_add", argConf.get("quick_add", "false"));
    Boolean full_run = curConf.get("intermediate").matches("(?i).*true.*");
    curConf.put("format", argConf.get("format", "unknown"));
    curConf.put("split", argConf.get("split", "1"));
    curConf.put("copy", argConf.get("copy", "true"));

    // Constants
    curConf.put("base_path", argConf.get("hdfs_base_path"));
    curConf.put("temp_path", argConf.get("hdfs_temp_path"));
    curConf.put("local_temp_path", argConf.get("local_temp_path"));
    curConf.put("db_name_files", argConf.get("hbase_file_table"));
    curConf.put("db_name_runs", argConf.get("hbase_run_table"));
    curConf.put("db_name_updates", argConf.get("hbase_db_update_table"));

    // Timestamps
    Date currentTime = new Date();
    Date endDate = new Date(new Long(curConf.get("timestamp_stop")));
    curConf.put("timestamp_real", Long.toString(currentTime.getTime()));

    return true;
  }