public EntityBean create(EntityBean eb) { ItemDataBean idb = (ItemDataBean) eb; HashMap variables = new HashMap(); variables.put(new Integer(1), new Integer(idb.getEventCRFId())); variables.put(new Integer(2), new Integer(idb.getItemId())); variables.put(new Integer(3), new Integer(idb.getStatus().getId())); variables.put(new Integer(4), idb.getValue()); variables.put(new Integer(5), new Integer(idb.getOwnerId())); this.execute(digester.getQuery("create"), variables); if (isQuerySuccessful()) { idb.setId(getCurrentPK()); } return idb; }
private ItemDataBean copyItemDataBean(ItemDataBean src) { ItemDataBean result = new ItemDataBean(); result.setEventCRFId(src.getEventCRFId()); result.setItemId(src.getItemId()); result.setValue(src.getValue()); result.setOrdinal(src.getOrdinal()); result.setSelected(src.isSelected()); result.setAuditLog(src.isAuditLog()); result.setCreatedDate(src.getCreatedDate()); result.setUpdatedDate(src.getUpdatedDate()); result.setOwner(src.getOwner()); result.setOwnerId(src.getOwnerId()); result.setUpdater(src.getUpdater()); result.setUpdaterId(src.getUpdaterId()); result.setStatus(src.getStatus()); return result; }
public EntityBean update(EntityBean eb) { ItemDataBean idb = (ItemDataBean) eb; idb.setActive(false); HashMap variables = new HashMap(); variables.put(new Integer(1), new Integer(idb.getEventCRFId())); variables.put(new Integer(2), new Integer(idb.getItemId())); variables.put(new Integer(3), new Integer(idb.getStatus().getId())); variables.put(new Integer(4), idb.getValue()); variables.put(new Integer(5), new Integer(idb.getUpdaterId())); variables.put(new Integer(6), new Integer(idb.getId())); this.execute(digester.getQuery("update"), variables); if (isQuerySuccessful()) { idb.setActive(true); } return idb; }
@Override public void processRequest() throws Exception { FormProcessor fp = new FormProcessor(request); int studySubId = fp.getInt(STUDY_SUB_ID, true); int eventCRFId = fp.getInt(EVENT_CRF_ID); String action = request.getParameter("action"); StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource()); StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource()); EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource()); StudyDAO sdao = new StudyDAO(sm.getDataSource()); if (eventCRFId == 0) { addPageMessage(respage.getString("please_choose_an_event_CRF_to_delete")); request.setAttribute("id", new Integer(studySubId).toString()); forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET); } else { EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId); StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId); request.setAttribute("studySub", studySub); // construct info needed on view event crf page CRFDAO cdao = new CRFDAO(sm.getDataSource()); CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource()); int crfVersionId = eventCRF.getCRFVersionId(); CRFBean cb = cdao.findByVersionId(crfVersionId); eventCRF.setCrf(cb); CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId); eventCRF.setCrfVersion(cvb); // then get the definition so we can call // DisplayEventCRFBean.setFlags int studyEventId = eventCRF.getStudyEventId(); StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId); int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId); StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource()); StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId); event.setStudyEventDefinition(sed); request.setAttribute("event", event); EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource()); StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId()); EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId()); DisplayEventCRFBean dec = new DisplayEventCRFBean(); dec.setEventCRF(eventCRF); dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry()); // find all item data ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource()); dnDao = new DiscrepancyNoteDAO(sm.getDataSource()); ArrayList<ItemDataBean> itemData = iddao.findAllByEventCRFId(eventCRF.getId()); request.setAttribute("items", itemData); if ("confirm".equalsIgnoreCase(action)) { request.setAttribute("displayEventCRF", dec); forwardPage(Page.DELETE_EVENT_CRF); } else { logger.info("submit to delete the event CRF from event"); // OC-6303 Deleting Event CRF resets Show / Hide logic // delete records from DynamicItemForm and DynamicItemGroup getDynamicsItemFormMetadataDao().delete(eventCRFId); getDynamicsItemGroupMetadataDao().delete(eventCRFId); eventCRF.setOldStatus(eventCRF.getStatus()); eventCRF.setStatus(Status.RESET); eventCRF.setUpdater(ub); ecdao.update(eventCRF); for (ItemDataBean itemdata : itemData) { // OC-6343 Rule behaviour must be reset if an Event CRF is deleted // delete the records from ruleActionRunLogDao getRuleActionRunLogDao().delete(itemdata.getId()); // OC-6344 Notes & Discrepancies must be set to "closed" when event CRF is deleted // parentDiscrepancyNoteList is the list of the parent DNs records only ArrayList<DiscrepancyNoteBean> parentDiscrepancyNoteList = getDnDao().findParentNotesOnlyByItemData(itemdata.getId()); for (DiscrepancyNoteBean parentDiscrepancyNote : parentDiscrepancyNoteList) { if (parentDiscrepancyNote.getResolutionStatusId() != 4) { // if the DN's resolution status is not set to Closed String description = resword.getString("dn_auto-closed_description"); String detailedNotes = resword.getString("dn_auto_closed_detailed_notes"); // create new DN record , new DN Map record , also update the parent record createDiscrepancyNoteBean( description, detailedNotes, itemdata.getId(), study, ub, parentDiscrepancyNote); } } iddao = new ItemDataDAO(sm.getDataSource()); ifmdao = new ItemFormMetadataDAO(sm.getDataSource()); ItemDataBean idBean = (ItemDataBean) iddao.findByPK(itemdata.getId()); ItemFormMetadataBean ifmBean = ifmdao.findByItemIdAndCRFVersionId(idBean.getItemId(), crfVersionId); // Updating Dn_item_data_map actovated column into false for the existing DNs ArrayList<DiscrepancyNoteBean> dnBeans = getDnDao().findExistingNotesForItemData(itemdata.getId()); if (dnBeans.size() != 0) { DiscrepancyNoteBean dnBean = new DiscrepancyNoteBean(); dnBean.setEntityId(itemdata.getId()); dnBean.setActivated(false); getDnDao().updateDnMapActivation(dnBean); } // Default Values are not addressed itemdata.setValue(""); itemdata.setOldStatus(itemdata.getStatus()); itemdata.setOwner(ub); itemdata.setStatus(Status.AVAILABLE); itemdata.setUpdater(ub); iddao.updateUser(itemdata); iddao.update(itemdata); } // OC-6291 event_crf status change eventCRF.setOldStatus(eventCRF.getStatus()); eventCRF.setStatus(Status.AVAILABLE); eventCRF.setUpdater(ub); ecdao.update(eventCRF); if (event.getSubjectEventStatus().isCompleted() || event.getSubjectEventStatus().isSigned()) { event.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED); event.setUpdater(ub); sedao = new StudyEventDAO(sm.getDataSource()); sedao.update(event); } String emailBody = respage.getString("the_event_CRF") + cb.getName() + respage.getString("has_been_deleted_from_the_event") + event.getStudyEventDefinition().getName() + ". " + respage.getString("has_been_deleted_from_the_event_cont"); addPageMessage(emailBody); // sendEmail(emailBody); request.setAttribute("id", new Integer(studySubId).toString()); forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET); } } }
@Override @SuppressWarnings(value = "unchecked") public void processRequest() throws Exception { ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource()); EventCRFDAO eventCrfDao = new EventCRFDAO(sm.getDataSource()); CrfBusinessLogicHelper crfBusinessLogicHelper = new CrfBusinessLogicHelper(sm.getDataSource()); String action = request.getParameter("action"); FormProcessor fp = new FormProcessor(request); // checks which module the requests are from String module = fp.getString(MODULE); request.setAttribute(MODULE, module); resetPanel(); panel.setStudyInfoShown(false); panel.setOrderedData(true); setToPanel(resword.getString("create_CRF"), respage.getString("br_create_new_CRF_entering")); setToPanel( resword.getString("create_CRF_version"), respage.getString("br_create_new_CRF_uploading")); setToPanel( resword.getString("revise_CRF_version"), respage.getString("br_if_you_owner_CRF_version")); setToPanel( resword.getString("CRF_spreadsheet_template"), respage.getString("br_download_blank_CRF_spreadsheet_from")); setToPanel( resword.getString("example_CRF_br_spreadsheets"), respage.getString("br_download_example_CRF_instructions_from")); if ("confirm".equalsIgnoreCase(action)) { List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData"); logger.info("Size of displayItemBeanWrappers : " + displayItemBeanWrappers.size()); forwardPage(Page.VERIFY_IMPORT_CRF_DATA); } if ("save".equalsIgnoreCase(action)) { List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData"); // System.out.println("Size of displayItemBeanWrappers : " + displayItemBeanWrappers.size()); for (DisplayItemBeanWrapper wrapper : displayItemBeanWrappers) { int eventCrfBeanId = -1; EventCRFBean eventCrfBean = new EventCRFBean(); // TODO : tom , the wrapper object has all the necessary data - // as you see we check the // is to see if this data is Savable if it is then we go ahead // and save it. if not we discard. // So the change needs to happen here , instead of discarding we // need to file discrepancy notes // and save the data. If you look in the // Page.VERIFY_IMPORT_CRF_DATA jsp file you can see how I am // pulling the errors. and use that in the same way. logger.info("right before we check to make sure it is savable: " + wrapper.isSavable()); if (wrapper.isSavable()) { ArrayList<Integer> eventCrfInts = new ArrayList<Integer>(); // based on the use case: "If any of the data does not meet // validations specified in the CRF // Template, a discrepancy note is automatically logged. // The DN will have a type of Failed Validation Check, and // a message of Failed Validation check." // System.out.println("wrapper problems found : " + // wrapper.getValidationErrors().toString()); for (DisplayItemBean displayItemBean : wrapper.getDisplayItemBeans()) { eventCrfBeanId = displayItemBean.getData().getEventCRFId(); eventCrfBean = (EventCRFBean) eventCrfDao.findByPK(eventCrfBeanId); logger.info("found value here: " + displayItemBean.getData().getValue()); logger.info("found status here: " + eventCrfBean.getStatus().getName()); // System.out.println("found event crf bean name here: " // + // eventCrfBean.getEventName()+" id "+eventCrfBean.getId // ()); // SO, items can be created in a wrapper which is set to // overwrite // we get around this by checking the bean first, to // make sure it's not null ItemDataBean itemDataBean = new ItemDataBean(); itemDataBean = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal( displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal()); if (wrapper.isOverwrite() && itemDataBean.getStatus() != null) { // ItemDataBean itemDataBean = new ItemDataBean(); // itemDataBean = // itemDataDao.findByItemIdAndEventCRFIdAndOrdinal( // displayItemBean.getItem().getId(), // eventCrfBean.getId(), displayItemBean // .getData().getOrdinal()); // itemDataBean = // itemDataDao.findByEventCRFIdAndItemName( // eventCrfBean, // displayItemBean.getItem().getName()); logger.info( "just tried to find item data bean on item name " + displayItemBean.getItem().getName()); itemDataBean.setUpdatedDate(new Date()); itemDataBean.setUpdater(ub); itemDataBean.setValue(displayItemBean.getData().getValue()); // set status? itemDataDao.update(itemDataBean); logger.info("updated: " + itemDataBean.getItemId()); // need to set pk here in order to create dn displayItemBean.getData().setId(itemDataBean.getId()); } else { itemDataDao.create(displayItemBean.getData()); logger.info( "created: " + displayItemBean.getData().getItemId() + "event CRF ID = " + eventCrfBean.getId() + "CRF VERSION ID =" + eventCrfBean.getCRFVersionId()); // does this dao function work for repeating // events/groups? // ItemDataBean itemDataBean = // itemDataDao.findByEventCRFIdAndItemName( // eventCrfBean, // displayItemBean.getItem().getName()); ItemDataBean itemDataBean2 = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal( displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal()); logger.info( "found: id " + itemDataBean2.getId() + " name " + itemDataBean2.getName()); displayItemBean.getData().setId(itemDataBean2.getId()); } // logger.info("created item data bean: // "+displayItemBean.getData().getId()); // logger.info("created: // "+displayItemBean.getData().getName()); // logger.info("continued: // "+displayItemBean.getData().getItemId()); ItemDAO idao = new ItemDAO(sm.getDataSource()); ItemBean ibean = (ItemBean) idao.findByPK(displayItemBean.getData().getItemId()); // logger.info("continued2: getName " + // ibean.getName()); // System.out.println("*** checking for validation errors: " + ibean.getName()); String itemOid = displayItemBean.getItem().getOid() + "_" + wrapper.getStudyEventRepeatKey() + "_" + displayItemBean.getData().getOrdinal() + "_" + wrapper.getStudySubjectOid(); if (wrapper.getValidationErrors().containsKey(itemOid)) { ArrayList messageList = (ArrayList) wrapper.getValidationErrors().get(itemOid); // if // (wrapper.getValidationErrors().containsKey(ibean // .getName())) { // ArrayList messageList = (ArrayList) // wrapper.getValidationErrors // ().get(ibean.getName()); // could be more then one will have to iterate // could it be more than one? tbh 08/2008 for (int iter = 0; iter < messageList.size(); iter++) { String message = (String) messageList.get(iter); DiscrepancyNoteBean parentDn = ImportSpringJob.createDiscrepancyNote( ibean, message, eventCrfBean, displayItemBean, null, ub, sm.getDataSource(), currentStudy); ImportSpringJob.createDiscrepancyNote( ibean, message, eventCrfBean, displayItemBean, parentDn.getId(), ub, sm.getDataSource(), currentStudy); // System.out.println("*** created disc note with message: " + message); // displayItemBean); } } // logger.info("created: // "+displayItemBean.getDbData().getName()); if (!eventCrfInts.contains(new Integer(eventCrfBean.getId()))) { crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub); // System.out.println("*** just updated event crf bean: " + eventCrfBean.getId()); eventCrfInts.add(new Integer(eventCrfBean.getId())); } } // end of item datas, tbh // crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub); // System .out.println("*** just updated event crf bean: "+ // eventCrfBean.getId()); // need to update the study event status as well, tbh // crfBusinessLogicHelper.updateStudyEvent(eventCrfBean, // ub); // above should do it for us, tbh 08/2008 } } addPageMessage(respage.getString("data_has_been_successfully_import")); // forwardPage(Page.SUBMIT_DATA_SERVLET); forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET); // replaced tbh, 06/2009 } }
/* * (non-Javadoc) * * @see org.akaza.openclinica.control.core.SecureController#processRequest() */ @Override protected void processRequest() throws Exception { FormProcessor fp = new FormProcessor(request); int noteId = fp.getInt(INPUT_NOTE_ID); String module = (String) session.getAttribute("module"); // Integer subjectId = (Integer) session.getAttribute("subjectId"); StudySubjectDAO studySubjectDAO = new StudySubjectDAO(sm.getDataSource()); DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource()); dndao.setFetchMapping(true); // check that the note exists DiscrepancyNoteBean discrepancyNoteBean = (DiscrepancyNoteBean) dndao.findByPK(noteId); if (!discrepancyNoteBean.isActive()) { throw new InconsistentStateException( Page.MANAGE_STUDY_SERVLET, resexception.getString("you_are_trying_resolve_discrepancy_not_exist")); } // check that the note has not already been closed ArrayList children = dndao.findAllByParent(discrepancyNoteBean); discrepancyNoteBean.setChildren(children); // This logic has been reverted, issue-7459 // if (parentNoteIsClosed(discrepancyNoteBean)) { // throw new InconsistentStateException(Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET, // respage // .getString("the_discrepancy_choose_has_been_closed_resolved_create_new")); // } // all clear, send the user to the resolved screen String entityType = discrepancyNoteBean.getEntityType().toLowerCase(); discrepancyNoteBean.setResStatus( ResolutionStatus.get(discrepancyNoteBean.getResolutionStatusId())); discrepancyNoteBean.setDisType( DiscrepancyNoteType.get(discrepancyNoteBean.getDiscrepancyNoteTypeId())); // BWP 03/17/2009 3166: if it's not an ItemData type note, redirect // Monitors to View Subject or // View Study Events << if (currentRole.getRole().equals(Role.MONITOR) && !"itemdata".equalsIgnoreCase(entityType) && !"eventcrf".equalsIgnoreCase(entityType)) { redirectMonitor(module, discrepancyNoteBean); return; } // >> // If Study is Frozen or Locked if (currentStudy.getStatus().isFrozen() && !"itemdata".equalsIgnoreCase(entityType) && !"eventcrf".equalsIgnoreCase(entityType)) { redirectMonitor(module, discrepancyNoteBean); return; } boolean toView = false; boolean isCompleted = false; if ("itemdata".equalsIgnoreCase(entityType)) { ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource()); ItemDataBean idb = (ItemDataBean) iddao.findByPK(discrepancyNoteBean.getEntityId()); EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource()); EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId()); StudySubjectBean studySubjectBean = (StudySubjectBean) studySubjectDAO.findByPK(ecb.getStudySubjectId()); discrepancyNoteBean.setSubjectId(studySubjectBean.getId()); discrepancyNoteBean.setItemId(idb.getItemId()); if (ecb.getStatus().equals(Status.UNAVAILABLE)) { isCompleted = true; } toView = true; // we want to go to view note page if the note is // for item data } // logger.info("set up pop up url: " + createNoteURL); // System.out.println("set up pop up url: " + createNoteURL); boolean goNext = prepareRequestForResolution( request, sm.getDataSource(), currentStudy, discrepancyNoteBean, isCompleted); Page p = getPageForForwarding(discrepancyNoteBean, isCompleted); // logger.info("found page for forwarding: " + p.getFileName()); if (p == null) { throw new InconsistentStateException( Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET, resexception.getString("the_discrepancy_note_triying_resolve_has_invalid_type")); } else { if (p.getFileName().contains("?")) { if (!p.getFileName().contains("fromViewNotes=1")) { p.setFileName(p.getFileName() + "&fromViewNotes=1"); } } else { p.setFileName(p.getFileName() + "?fromViewNotes=1"); } String createNoteURL = CreateDiscrepancyNoteServlet.getAddChildURL( discrepancyNoteBean, ResolutionStatus.CLOSED, true); setPopUpURL(createNoteURL); } if (!goNext) { setPopUpURL(""); addPageMessage( respage.getString("you_may_not_perform_admin_edit_on_CRF_not_completed_by_user")); p = Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET; } forwardPage(p); }
public boolean prepareRequestForResolution( HttpServletRequest request, DataSource ds, StudyBean currentStudy, DiscrepancyNoteBean note, boolean isCompleted) { String entityType = note.getEntityType().toLowerCase(); int id = note.getEntityId(); if ("subject".equalsIgnoreCase(entityType)) { StudySubjectDAO ssdao = new StudySubjectDAO(ds); StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(id, currentStudy); request.setAttribute("action", "show"); request.setAttribute("id", String.valueOf(note.getEntityId())); request.setAttribute("studySubId", String.valueOf(ssb.getId())); } else if ("studysub".equalsIgnoreCase(entityType)) { request.setAttribute("action", "show"); request.setAttribute("id", String.valueOf(note.getEntityId())); } else if ("eventcrf".equalsIgnoreCase(entityType)) { request.setAttribute("editInterview", "1"); EventCRFDAO ecdao = new EventCRFDAO(ds); EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(id); request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN, ecb); // If the request is passed along to ViewSectionDataEntryServlet, // that code needs // an event crf id; the (ecb.getId()+"") is necessary because // FormProcessor throws // a ClassCastException without the casting to a String request.setAttribute(ViewSectionDataEntryServlet.EVENT_CRF_ID, ecb.getId() + ""); } else if ("studyevent".equalsIgnoreCase(entityType)) { StudyEventDAO sedao = new StudyEventDAO(ds); StudyEventBean seb = (StudyEventBean) sedao.findByPK(id); request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(id)); request.setAttribute(UpdateStudyEventServlet.EVENT_ID, String.valueOf(id)); request.setAttribute( UpdateStudyEventServlet.STUDY_SUBJECT_ID, String.valueOf(seb.getStudySubjectId())); } // this is for item data else if ("itemdata".equalsIgnoreCase(entityType)) { ItemDataDAO iddao = new ItemDataDAO(ds); ItemDataBean idb = (ItemDataBean) iddao.findByPK(id); EventCRFDAO ecdao = new EventCRFDAO(ds); EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId()); StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource()); StudySubjectBean ssb = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId()); ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(ds); ItemFormMetadataBean ifmb = ifmdao.findByItemIdAndCRFVersionId(idb.getItemId(), ecb.getCRFVersionId()); if (currentRole.getRole().equals(Role.MONITOR) || !isCompleted) { StudyEventDAO sedao = new StudyEventDAO(ds); StudyEventBean seb = (StudyEventBean) sedao.findByPK(id); request.setAttribute(EVENT_CRF_ID, String.valueOf(idb.getEventCRFId())); request.setAttribute(STUDY_SUB_ID, String.valueOf(seb.getStudySubjectId())); } else { request.setAttribute( DataEntryServlet.INPUT_EVENT_CRF_ID, String.valueOf(idb.getEventCRFId())); request.setAttribute( DataEntryServlet.INPUT_SECTION_ID, String.valueOf(ifmb.getSectionId())); } DataEntryStage stage = ecb.getStage(); // if (!stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE)) { // return false; // } } return true; }