private boolean updateStudy2(FormProcessor fp) {
study.setOldStatus(study.getStatus());
study.setStatus(Status.get(fp.getInt("statusId")));
if (StringUtil.isBlank(fp.getString(INPUT_VER_DATE))) {
study.setProtocolDateVerification(null);
} else {
study.setProtocolDateVerification(fp.getDate(INPUT_VER_DATE));
}
study.setDatePlannedStart(fp.getDate(INPUT_START_DATE));
if (StringUtil.isBlank(fp.getString(INPUT_END_DATE))) {
study.setDatePlannedEnd(null);
} else {
study.setDatePlannedEnd(fp.getDate(INPUT_END_DATE));
}
study.setPhase(fp.getString("phase"));
if (fp.getInt("genetic") == 1) {
study.setGenetic(true);
} else {
study.setGenetic(false);
}
String interventional = resadmin.getString("interventional");
return interventional.equalsIgnoreCase(study.getProtocolType());
}
private boolean mayProceedPreview(String studyOid) throws Exception {
boolean accessPermission = false;
StudyBean study = getParentStudy(studyOid);
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(dataSource);
StudyParameterValueBean pStatus =
spvdao.findByHandleAndStudy(study.getId(), "participantPortal");
participantPortalRegistrar = new ParticipantPortalRegistrar();
String pManageStatus =
participantPortalRegistrar.getRegistrationStatus(studyOid).toString(); // ACTIVE ,
// PENDING ,
// INACTIVE
String participateStatus = pStatus.getValue().toString(); // enabled , disabled
String studyStatus =
study.getStatus().getName().toString(); // available , pending , frozen , locked
logger.info(
"pManageStatus: "
+ pManageStatus
+ " participantStatus: "
+ participateStatus
+ " studyStatus: "
+ studyStatus);
if (participateStatus.equalsIgnoreCase("enabled")
&& (studyStatus.equalsIgnoreCase("available")
|| studyStatus.equalsIgnoreCase("pending")
|| studyStatus.equalsIgnoreCase("frozen")
|| studyStatus.equalsIgnoreCase("locked"))
&& (pManageStatus.equalsIgnoreCase("ACTIVE")
|| pManageStatus.equalsIgnoreCase("PENDING")
|| pManageStatus.equalsIgnoreCase("INACTIVE"))) {
accessPermission = true;
}
return accessPermission;
}
private StudyUserRoleBean getRole(UserAccountBean userAccount, StudyBean study) throws Exception {
StudyUserRoleBean role = new StudyUserRoleBean();
if (study == null || userAccount == null || study.getId() == 0) {
throw new Exception();
}
if (userAccount.getId() > 0
&& study.getId() > 0
&& !study.getStatus().getName().equals("removed")) {
role = userAccount.getRoleByStudy(study.getId());
if (study.getParentStudyId() > 0) {
StudyUserRoleBean roleInParent = userAccount.getRoleByStudy(study.getParentStudyId());
role.setRole(Role.max(role.getRole(), roleInParent.getRole()));
}
} else {
throw new Exception();
}
return role;
}
private void confirmWholeStudy(FormProcessor fp, Validator v) {
errors = v.validate();
if (study.getStatus().isLocked()) {
study.getStudyParameterConfig().setDiscrepancyManagement("false");
} else {
study
.getStudyParameterConfig()
.setDiscrepancyManagement(fp.getString("discrepancyManagement"));
}
study.getStudyParameterConfig().setCollectDob(fp.getString("collectDob"));
study.getStudyParameterConfig().setGenderRequired(fp.getString("genderRequired"));
study
.getStudyParameterConfig()
.setInterviewerNameRequired(fp.getString("interviewerNameRequired"));
study
.getStudyParameterConfig()
.setInterviewerNameDefault(fp.getString("interviewerNameDefault"));
study.getStudyParameterConfig().setInterviewDateEditable(fp.getString("interviewDateEditable"));
study.getStudyParameterConfig().setInterviewDateRequired(fp.getString("interviewDateRequired"));
study
.getStudyParameterConfig()
.setInterviewerNameEditable(fp.getString("interviewerNameEditable"));
study.getStudyParameterConfig().setInterviewDateDefault(fp.getString("interviewDateDefault"));
study.getStudyParameterConfig().setSubjectIdGeneration(fp.getString("subjectIdGeneration"));
study
.getStudyParameterConfig()
.setSubjectPersonIdRequired(fp.getString("subjectPersonIdRequired"));
study.getStudyParameterConfig().setSubjectIdPrefixSuffix(fp.getString("subjectIdPrefixSuffix"));
study.getStudyParameterConfig().setPersonIdShownOnCRF(fp.getString("personIdShownOnCRF"));
study
.getStudyParameterConfig()
.setSecondaryLabelViewable(fp.getString("secondaryLabelViewable"));
study
.getStudyParameterConfig()
.setAdminForcedReasonForChange(fp.getString("adminForcedReasonForChange"));
if (!errors.isEmpty()) {
request.setAttribute("formMessages", errors);
}
}
/** Inserts the new study into database */
private void submitStudy() {
FormProcessor fp = new FormProcessor(request);
StudyDAO sdao = new StudyDAO(sm.getDataSource());
StudyBean study = (StudyBean) session.getAttribute("newStudy");
ArrayList parameters = study.getStudyParameters();
logger.info("study bean to be created:\n");
logger.info(
study.getName()
+ "\n"
+ study.getIdentifier()
+ "\n"
+ study.getParentStudyId()
+ "\n"
+ study.getSummary()
+ "\n"
+ study.getPrincipalInvestigator()
+ "\n"
+ study.getDatePlannedStart()
+ "\n"
+ study.getDatePlannedEnd()
+ "\n"
+ study.getFacilityName()
+ "\n"
+ study.getFacilityCity()
+ "\n"
+ study.getFacilityState()
+ "\n"
+ study.getFacilityZip()
+ "\n"
+ study.getFacilityCountry()
+ "\n"
+ study.getFacilityRecruitmentStatus()
+ "\n"
+ study.getFacilityContactName()
+ "\n"
+ study.getFacilityContactEmail()
+ "\n"
+ study.getFacilityContactPhone()
+ "\n"
+ study.getFacilityContactDegree());
study.setOwner(ub);
study.setCreatedDate(new Date());
StudyBean parent = (StudyBean) sdao.findByPK(study.getParentStudyId());
study.setType(parent.getType());
// YW 10-10-2007, enable setting site status
study.setStatus(study.getStatus());
// YW >>
study.setGenetic(parent.isGenetic());
study = (StudyBean) sdao.create(study);
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
for (int i = 0; i < parameters.size(); i++) {
StudyParamsConfig config = (StudyParamsConfig) parameters.get(i);
StudyParameterValueBean spv = config.getValue();
spv.setStudyId(study.getId());
spv = (StudyParameterValueBean) spvdao.create(config.getValue());
}
// YW << here only "collectDob" and "genderRequired" have been corrected
// for sites.
StudyParameterValueBean spv = new StudyParameterValueBean();
StudyParameterValueBean parentSPV = spvdao.findByHandleAndStudy(parent.getId(), "collectDob");
spv.setStudyId(study.getId());
spv.setParameter("collectDob");
spv.setValue(parentSPV.getValue());
spvdao.create(spv);
parentSPV = spvdao.findByHandleAndStudy(parent.getId(), "genderRequired");
spv.setParameter("genderRequired");
spv.setValue(parentSPV.getValue());
spvdao.create(spv);
// YW >>
// switch user to the newly created site
session.setAttribute("study", session.getAttribute("newStudy"));
currentStudy = (StudyBean) session.getAttribute("study");
session.removeAttribute("newStudy");
addPageMessage(respage.getString("the_new_site_created_succesfully_current"));
forwardPage(Page.SITE_LIST_SERVLET);
}