@Override protected Protocol convert(File directory) { Protocol protocol = new Protocol(); protocol.setIdentifier(directory.getName()); if (key != null) {} return protocol; }
@Override public Protocol fromJena(Model source, Resource res) throws IllegalArgumentException { Protocol protocol = new Protocol(); try { protocol.setResourceURL(new URL(res.getURI())); } catch (MalformedURLException e) { throw new IllegalArgumentException(String.format(msg_InvalidURI, "protocol", res.getURI())); } try { protocol.setSearchable(res.getProperty(TOXBANK.ISSUMMARYSEARCHABLE).getBoolean()); } catch (Exception x) { protocol.setSearchable(false); } try { protocol.setVersion(res.getProperty(TOXBANK.HASVERSIONINFO).getInt()); } catch (Exception x) { protocol.setVersion(0); } try { protocol.setPublished(res.getProperty(TOXBANK.ISPUBLISHED).getBoolean()); } catch (Exception x) { protocol.setPublished(null); } try { protocol.setTimeModified(res.getProperty(DCTerms.modified).getLong()); } catch (Exception x) { protocol.setTimeModified(null); } try { protocol.setSubmissionDate(res.getProperty(DCTerms.dateSubmitted).getLong()); } catch (Exception x) { protocol.setSubmissionDate(null); } if (res.getProperty(DCTerms.title) != null) protocol.setTitle(res.getProperty(DCTerms.title).getString()); if (res.getProperty(TOXBANK.HASSTATUS) != null) try { protocol.setStatus(Protocol.STATUS.valueOf(res.getProperty(TOXBANK.HASSTATUS).getString())); } catch (Exception x) { protocol.setStatus(STATUS.RESEARCH); } if (res.getProperty(DCTerms.identifier) != null) protocol.setIdentifier(res.getProperty(DCTerms.identifier).getString()); if (res.getProperty(TOXBANK.HASABSTRACT) != null) protocol.setAbstract(res.getProperty(TOXBANK.HASABSTRACT).getString()); StmtIterator keywords = res.listProperties(TOXBANK.HASKEYWORD); while (keywords.hasNext()) { protocol.addKeyword(keywords.next().getString()); } String uri = null; StmtIterator authors = res.listProperties(TOXBANK.HASAUTHOR); while (authors.hasNext()) { Resource authorRes = authors.next().getResource(); User author = userIO.fromJena(source, authorRes); protocol.addAuthor(author); } authors.close(); StmtIterator projects = res.listProperties(TOXBANK.HASPROJECT); while (projects.hasNext()) { Resource projectRes = projects.next().getResource(); Project project = projectIO.fromJena(source, projectRes); protocol.addProject(project); } projects.close(); if (res.getProperty(TOXBANK.HASORGANISATION) != null) { Organisation org = organisationIO.fromJena(source, res.getProperty(TOXBANK.HASORGANISATION).getResource()); protocol.setOrganisation(org); } if (res.getProperty(TOXBANK.HASOWNER) != null) try { uri = res.getProperty(TOXBANK.HASOWNER).getResource().getURI(); User author = new User(); author.setResourceURL(new URL(uri)); protocol.setOwner(author); } catch (MalformedURLException e) { throw new IllegalArgumentException(String.format(msg_InvalidURI, "a protocol owner", uri)); } if (res.getProperty(TOXBANK.HASDOCUMENT) != null) try { uri = res.getProperty(TOXBANK.HASDOCUMENT).getResource().getURI(); Document document = new Document(new URL(uri)); protocol.setDocument(document); } catch (MalformedURLException e) { throw new IllegalArgumentException(String.format(msg_InvalidURI, "a document", uri)); } if (res.getProperty(TOXBANK.HASTEMPLATE) != null) try { uri = res.getProperty(TOXBANK.HASTEMPLATE).getResource().getURI(); Template dataTemplate = new Template(new URL(uri)); protocol.setDataTemplate(dataTemplate); } catch (MalformedURLException e) { throw new IllegalArgumentException(String.format(msg_InvalidURI, "data template", uri)); } if (res.getProperty(DCTerms.license) != null) try { protocol.setLicense(new URL(res.getProperty(DCTerms.license).getObject().toString())); } catch (MalformedURLException e) { throw new IllegalArgumentException( String.format( msg_InvalidURI, "a license", res.getProperty(DCTerms.license).getObject())); } return protocol; }