@Test public void testCreateNamedSequences() { // A DNA Sequence ISequence seq = biojava.createSequence("sequence1", "CCCTCGGCTTC"); try { assertEquals("CCCTCGGCTTC", seq.getPlainSequence().trim().toUpperCase()); // Right now: don't care about name as it is set by BioJava } catch (IOException e) { fail(e.getMessage()); } // A Protein Sequence seq = biojava.createSequence("sequence2", "SEQUENCE"); try { assertEquals("SEQUENCE", seq.getPlainSequence().trim().toUpperCase()); } catch (IOException e) { fail(e.getMessage()); } /* //An RNA Sequence seq=biojava.createSequence("CCCUCGGCUUC"); try { assertEquals("CCCUCGGCUUC", seq.getPlainSequence()); } catch (IOException e) { fail(e.getMessage()); } */ }
@Test public void testCreateSequences() { // A DNA Sequence ISequence seq = biojava.createSequence("CCCTCGGCTTC"); try { assertEquals("CCCTCGGCTTC", seq.getPlainSequence().trim().toUpperCase()); } catch (IOException e) { fail(e.getMessage()); } // A Protein Sequence seq = biojava.createSequence("SEQUENCE"); try { assertEquals("SEQUENCE", seq.getPlainSequence().trim().toUpperCase()); } catch (IOException e) { fail(e.getMessage()); } /* //An RNA Sequence seq=biojava.createSequence("CCCUCGGCUUC"); try { assertEquals("CCCUCGGCUUC", seq.getPlainSequence()); } catch (IOException e) { fail(e.getMessage()); } */ }