/** A simple command line tool for downloading images from OMERO. */
public static void main(String[] args) throws Exception {
// parse OMERO credentials
BufferedReader con = new BufferedReader(new InputStreamReader(System.in, Constants.ENCODING));
System.out.print("Server? ");
final String server = con.readLine();
System.out.printf("Port [%d]? ", DEFAULT_PORT);
final String portString = con.readLine();
final int port = portString.equals("") ? DEFAULT_PORT : Integer.parseInt(portString);
System.out.print("Username? ");
final String user = con.readLine();
System.out.print("Password? ");
final String pass = new String(con.readLine());
System.out.print("Group? ");
final String group = con.readLine();
System.out.print("Image ID? ");
final int imageId = Integer.parseInt(con.readLine());
System.out.print("\n\n");
// construct the OMERO reader
final OmeroReader omeroReader = new OmeroReader();
omeroReader.setUsername(user);
omeroReader.setPassword(pass);
omeroReader.setServer(server);
omeroReader.setPort(port);
omeroReader.setGroupName(group);
final String id = "omero:iid=" + imageId;
try {
omeroReader.setId(id);
} catch (Exception e) {
omeroReader.close();
throw e;
}
omeroReader.close();
}
public static void main(String[] args) throws Exception {
// get credentials from stdin
BufferedReader in = new BufferedReader(new InputStreamReader(System.in, Constants.ENCODING));
String server = readLine(in, "Server", "localhost");
String portValue = readLine(in, "Port", "1099");
String user = readLine(in, "Username", "root");
String pass = readLine(in, "Password", "ome");
String pidValue = readLine(in, "Pixels ID", "1");
int port = Integer.parseInt(portValue);
int pid = Integer.parseInt(pidValue);
System.out.println();
// connect to OMERO server
System.out.println("Initializing OMERO reader");
OmeroReader omero = new OmeroReader();
String id =
"omero:\n"
+ "server="
+ server
+ "\n"
+ "port="
+ port
+ "\n"
+ "user="******"\n"
+ "pass="******"\n"
+ "pid="
+ pid;
omero.setId(id);
// print some metadata as a simple test
int sizeX = omero.getSizeX();
int sizeY = omero.getSizeY();
System.out.println("Image dimensions are " + sizeX + " x " + sizeY);
omero.close();
}