public static void main(String[] args) {
FeatureHelper helper = FeatureHelper.instance();
System.out.println("---"); // document separator for Joelib debug messages
for (Object feature : helper.getNativeFeatures()) {
System.out.println("- :java_class: \"" + feature.toString() + "\"");
// methods for accessing feature descriptions e.g. with
// FeatureFactory.instance().getFeature(feature.toString()).getDescription().getText() or
// FeatureFactory.instance().getFeature(feature.toString()).getDescription().getHtml()
// are defunct
}
}
public LogP() {
if (logger.isDebugEnabled()) {
logger.debug("Initialize " + this.getClass().getName());
}
descInfo =
FeatureHelper.generateFeatureInfo(
this.getClass(),
BasicFeatureInfo.TYPE_NO_COORDINATES,
null,
"joelib2.feature.result.DoubleResult");
}
private static String[] buildDependencyTree() {
// ensure, that the class loader has all relevant classes loaded
BasicAromaticityTyper.instance();
BasicArrayHelper.instance();
AtomPairTypeHolder.instance();
BasicAtomTypeConversionHolder.instance();
BasicAtomTyper.instance();
BasicBatchScriptReplacer.instance();
BibitemHolder.instance();
// DatabaseConnection.instance();
DecimalFormatHelper.instance();
BasicElementHolder.instance();
ExternalFactory.instance();
FeatureFactory.instance();
FeatureHelper.instance();
BasicBatchFileUtilities.instance();
FilterFactory.instance();
// try
// {
// GhemicalInterface.instance();
// }
// catch(Exception e){
//
// }
BasicGroupContributionHolder.instance();
BasicIOTypeHolder.instance();
BasicIsotopeHolder.instance();
HelperMethods.instance();
BasicLineArrayHelper.instance();
BasicLineMatrixHelper.instance();
BasicMatrixHelper.instance();
// Avoid an instance, because this will add a X-server dependency for linux systems
// Mol2Image.instance();
// Avoid an instance, because this will add a X-server dependency for linux systems
// MolFileChooser.instance();
try {
BasicMoleculeCacheHolder.instance();
} catch (Exception e1) {
// TODO Auto-generated catch block
e1.printStackTrace();
}
ProcessFactory.instance();
BasicPropertyHolder.instance();
BasicProtonationModel.instance();
BasicResidueData.instance();
BasicResourceLoader.instance();
ResultFactory.instance();
BasicRotorRulesHolder.instance();
// Viewer.instance();
// show all loaded classes in the class loader
final ClassLoader[] loaders = ClassScope.getCallerClassLoaderTree();
final Class[] classes = ClassScope.getLoadedClasses(loaders);
String[] cnames = new String[classes.length];
Vector<String> results = new Vector<String>(classes.length);
StringBuffer buffer;
dependencyVersionHash = new Hashtable<String, int[]>(classes.length);
for (int c = 0; c < classes.length; c++) {
buffer = new StringBuffer(300);
cnames[c] = classes[c].getName();
// System.out.println ("[" + classes[c].getName () + "]:");
// System.out.println (" loaded by [" + classes[c].getClassLoader
// ().getClass ().getName () + "]");
// System.out.println (" from [" + ClassScope.getClassLocation
// (classes[c])
// + "]");
recurseInto(classes[c], buffer, 0, results);
}
String[] resultsArr = new String[results.size()];
for (int i = 0; i < resultsArr.length; i++) {
resultsArr[i] = results.get(i);
}
return resultsArr;
}