public void execute(Object o) {
DefaultTreeModel models = null;
try {
models = customManager.getCustomModels();
} catch (IOException e) {
}
DefaultMutableTreeNode root = (DefaultMutableTreeNode) models.getRoot();
FunctionFactorySherpaHelper.SetRoot(root);
FunctionFactorySherpaHelper.AddTreeSelectionListener(new ComponentTreeSelectionListener());
}
public void valueChanged(TreeSelectionEvent e) {
JTree tree = FunctionFactorySherpaHelper.GetJTree();
DefaultMutableTreeNode node = (DefaultMutableTreeNode) tree.getLastSelectedPathComponent();
if (node == null) {
return;
}
Object node_object = node.getUserObject();
if (node.isLeaf()) {
try {
// analytic Sherpa functions.
Function rf = (Function) node_object;
try {
if (rf instanceof Polynomial) {
rf = new Polynomial(1);
} else {
rf = (Function) rf.clone();
}
} catch (CloneNotSupportedException ex) {
rf = null;
}
FunctionFactorySherpaHelper.SetFunction(rf);
} catch (ClassCastException e1) {
// templates, tables and user files
try {
DefaultCustomModel model = (DefaultCustomModel) node_object;
String functionName = model.getFunctionName();
SherpaFunction function = new SherpaFunction();
URL url = model.getUrl();
String path = url.getPath();
function.addPath(path);
String name = model.getName();
if (path.contains("/tables/")) {
name = "tablemodel";
}
if (path.contains("/functions/")) {
name = "usermodel";
}
if (path.contains("/templates/")) {
name = "templatemodel";
}
function.setUserID(name);
function.setName(name);
function.setFunctionName(functionName);
// Converting a DefaultCustomModel to a SherpaFunction might
// require more than this. We'll see as we go further down
// the road...
// First, we need to break up the comma-separated string
// parameters into something that can actually be used to
// build instances of Function.
String[] parNames = model.getParnames().split("\\,");
String[] parVals = model.getParvals().split("\\,");
String[] parMins = model.getParmins().split("\\,");
String[] parMaxs = model.getParmaxs().split("\\,");
String[] parFrozen = model.getParfrozen().split("\\,");
int npars = parNames.length;
if (npars != parVals.length
|| npars != parMins.length
|| npars != parMaxs.length
|| npars != parFrozen.length) {
ExceptionHandler.handleException(
new Exception("Parameter lists wih different lengths."));
tree.clearSelection();
FunctionFactorySherpaHelper.dispose();
return;
}
// now we loop over the parameter lists, building
// each parameter in turn and adding it to the Function.
for (int i = 0; i < npars; i++) {
SherpaFParameter functionParameter = null;
try {
double value = Double.valueOf(parVals[i]);
double min = Double.valueOf(parMins[i]);
double max = Double.valueOf(parMaxs[i]);
functionParameter =
new SherpaFParameter(parNames[i], value, min, max, new NonSupportedUnits(""));
String frozen = parFrozen[i];
if (frozen != null) {
boolean fixed = (frozen.equalsIgnoreCase("True")) ? true : false;
functionParameter.setFixed(fixed);
}
} catch (NumberFormatException ex) {
ExceptionHandler.handleException(ex);
tree.clearSelection();
FunctionFactorySherpaHelper.dispose();
return;
} catch (ArrayIndexOutOfBoundsException ex) {
ExceptionHandler.handleException(ex);
tree.clearSelection();
FunctionFactorySherpaHelper.dispose();
return;
}
function.addParameter(functionParameter);
}
FunctionFactorySherpaHelper.SetFunction(function);
} catch (ClassCastException e2) {
}
}
tree.clearSelection();
FunctionFactorySherpaHelper.dispose();
}
}
public void init(IrisApplication app, IWorkspace workspace) {
visualizer = this;
sedManager = (SedlibSedManager) workspace.getSedManager();
SpvInitialization spvinit = new SpvInitialization(new String[] {}, null);
SpvProperties.SetProperty(Include.APP_NAME, Include.IRIS_APP_NAME);
SpvProperties.SetProperty(Include.APP_VERSION, Include.IRIS_VERSION);
spvinit.initialize(null, false);
FunctionFactorySherpaHelper.initialize();
this.app = app;
ws = workspace;
idm = new IrisDisplayManager(sedManager, ws, this);
idm.setDesktopMode(true);
idm.setConnection(app.getSAMPController());
File rootDir =
new File(
app.getConfigurationDir()
+ File.separator
+ "analysis"
+ File.separator
+ "custom_models");
try {
customManager = new CustomModelsManager(rootDir);
TreeRefresher treeRefresher = new TreeRefresher();
treeRefresher.execute(null);
FunctionFactorySherpaHelper.SetTreeRefresher(treeRefresher);
} catch (Exception ex) {
Logger.getLogger(IrisVisualizer.class.getName()).log(Level.SEVERE, null, ex);
int ans =
NarrowOptionPane.showConfirmDialog(
ws.getRootFrame(),
"Error initializing Custom Fit Component Manager: "
+ ex.getMessage()
+ "\nDo you want to reset custom models?",
"Iris Visualizer",
NarrowOptionPane.ERROR_MESSAGE);
if (ans == NarrowOptionPane.OK_OPTION) {
try {
if (rootDir.isDirectory()) {
deleteDirectory(rootDir);
} else {
rootDir.delete();
}
rootDir.mkdir();
customManager = new CustomModelsManager(rootDir);
} catch (IOException ex1) {
Logger.getLogger(IrisVisualizer.class.getName()).log(Level.SEVERE, null, ex1);
}
}
}
SedEvent.getInstance()
.add(
new SedListener() {
public void process(final ExtSed source, SedCommand payload) {
if (payload == SedCommand.SELECTED || payload == SedCommand.CHANGED) {
if (source.getNumberOfSegments() > 0) {
display(source);
}
} else if (payload == SedCommand.REMOVED) {
remove(source);
}
}
});
SegmentEvent.getInstance()
.add(
new SegmentListener() {
public void process(Segment source, final SegmentPayload payload) {
if (payload.getSedCommand() == SedCommand.REMOVED) {
return;
}
ExtSed sed = payload.getSed();
// If the sed structure was modified, invalidate
// any model associated with it.
invalidateModel(sed);
display(payload.getSed());
}
});
MultipleSegmentEvent.getInstance()
.add(
new MultipleSegmentListener() {
public void process(List<Segment> source, final SegmentPayload payload) {
ExtSed sed = payload.getSed();
// If the sed structure was modified, invalidate
// any model associated with it.
invalidateModel(sed);
display(payload.getSed());
}
});
}