/**
   * Deletes a meeting from the database
   *
   * <p>- Requires a cookie for the session user - Requires a meetingId request parameter for the
   * HTTP GET
   *
   * @param req The HTTP Request
   * @param res The HTTP Response
   */
  public void deletemeetingAction(HttpServletRequest req, HttpServletResponse res) {
    // Ensure there is a cookie for the session user
    if (AccountController.redirectIfNoCookie(req, res)) return;

    if (req.getMethod() == HttpMethod.Get) {

      // Get the meeting
      int meetingId = Integer.parseInt(req.getParameter("meetingId"));
      MeetingManager meetingMan = new MeetingManager();
      Meeting meeting = meetingMan.get(meetingId);
      meetingMan.deleteMeeting(meetingId);

      // Update the User Session to remove meeting
      HttpSession session = req.getSession();
      Session userSession = (Session) session.getAttribute("userSession");
      List<Meeting> adminMeetings = userSession.getUser().getMeetings();

      for (int i = 0; i < adminMeetings.size(); i++) {
        Meeting m = adminMeetings.get(i);
        if (m.getId() == meeting.getId()) {
          adminMeetings.remove(i);
          break;
        }
      }

      redirectToLocal(req, res, "/home/dashboard");
      return;

    } else if (req.getMethod() == HttpMethod.Post) {
      httpNotFound(req, res);
    }
  }
示例#2
0
  public void init() throws ServletException {
    super.init();
    // allow = ThreddsConfig.getBoolean("NetcdfSubsetService.allow", true);
    // String radarLevel2Dir = ThreddsConfig.get("NetcdfSubsetService.radarLevel2DataDir",
    // "/data/ldm/pub/native/radar/level2/");
    // if (!allow) return;
    contentPath = ServletUtil.getContentPath();
    rm = new RadarMethods(contentPath, logServerStartup);

    // read in radarCollections.xml catalog
    InvCatalogFactory factory = InvCatalogFactory.getDefaultFactory(false); // no validation
    cat = readCatalog(factory, getPath() + catName, contentPath + getPath() + catName);
    if (cat == null) {
      logServerStartup.info("cat initialization failed");
      return;
    }
    // URI tmpURI = cat.getBaseURI();
    cat.setBaseURI(catURI);
    // get path and location from cat
    List parents = cat.getDatasets();
    for (int i = 0; i < parents.size(); i++) {
      InvDataset top = (InvDataset) parents.get(i);
      datasets = top.getDatasets(); // dataset scans

      for (int j = 0; j < datasets.size(); j++) {
        InvDatasetScan ds = (InvDatasetScan) datasets.get(j);
        if (ds.getPath() != null) {
          dataLocation.put(ds.getPath(), ds.getScanLocation());
          logServerStartup.info("path =" + ds.getPath() + " location =" + ds.getScanLocation());
        }
        ds.setXlinkHref(ds.getPath() + "/dataset.xml");
      }
    }
    logServerStartup.info(getClass().getName() + " initialization complete ");
  } // end init
示例#3
0
 /**
  * Returns the values of the named parameter as a String array, or null if the parameter was not
  * sent. The array has one entry for each parameter field sent. If any field was sent without a
  * value that entry is stored in the array as a null. The values are guaranteed to be in their
  * normal, decoded form. A single value is returned as a one-element array.
  *
  * @param name the parameter name.
  * @return the parameter values.
  */
 public String[] getParameterValues(String name) {
   List<String> values = parameters.get(name);
   if (values == null || values.size() == 0) {
     return null;
   } else {
     return values.toArray(new String[values.size()]);
   }
 }
示例#4
0
 /**
  * Returns the value of the named parameter as a String, or null if the parameter was not sent or
  * was sent without a value. The value is guaranteed to be in its normal, decoded form. If the
  * parameter has multiple values, only the last one is returned (for backward compatibility). For
  * parameters with multiple values, it's possible the last "value" may be null.
  *
  * @param name the parameter name.
  * @return the parameter value.
  */
 public String getParameter(String name) {
   try {
     List<String> values = parameters.get(name);
     if (values == null || values.size() == 0) {
       return null;
     }
     return values.get(values.size() - 1);
   } catch (Exception e) {
     return null;
   }
 }
  public static UIComponent findPersistent(
      FacesContext context, ServletRequest req, UIComponent parent, String id) throws Exception {
    if (context == null) context = FacesContext.getCurrentInstance();

    BodyContent body = null;

    if (parent == null) {
      UIComponentClassicTagBase parentTag =
          (UIComponentClassicTagBase) req.getAttribute("caucho.jsf.parent");

      parent = parentTag.getComponentInstance();

      body = parentTag.getBodyContent();
    }

    if (parent != null) {
      List<UIComponent> children = parent.getChildren();
      int size = children.size();

      String prevId = null;
      for (int i = 0; i < size; i++) {
        UIComponent child = children.get(i);

        if (id.equals(child.getId())) {
          if (body != null) addVerbatim(parent, prevId, body);

          return child;
        }

        if (child.getId() != null) prevId = child.getId();
      }
    }

    return null;
  }
示例#6
0
 void setFormData(WObject.FormData formData) {
   if (!(formData.values.length == 0)) {
     List<String> attributes = new ArrayList<String>();
     attributes = new ArrayList<String>(Arrays.asList(formData.values[0].split(";")));
     if (attributes.size() == 6) {
       try {
         this.volume_ = Double.parseDouble(attributes.get(0));
       } catch (RuntimeException e) {
         this.volume_ = -1;
       }
       try {
         this.current_ = Double.parseDouble(attributes.get(1));
       } catch (RuntimeException e) {
         this.current_ = -1;
       }
       try {
         this.duration_ = Double.parseDouble(attributes.get(2));
       } catch (RuntimeException e) {
         this.duration_ = -1;
       }
       this.playing_ = attributes.get(3).equals("0");
       this.ended_ = attributes.get(4).equals("1");
       try {
         this.readyState_ = intToReadyState(Integer.parseInt(attributes.get(5)));
       } catch (RuntimeException e) {
         throw new WException(
             "WAbstractMedia: error parsing: " + formData.values[0] + ": " + e.toString());
       }
     } else {
       throw new WException("WAbstractMedia: error parsing: " + formData.values[0]);
     }
   }
 }
示例#7
0
 @Nonnull
 protected MBeanAttributeInfo[] getMBeanAttributesFor() {
   final List<MBeanAttributeInfo> attributes = new ArrayList<>();
   for (ScopeMapping mapping : _patternToMapping.values()) {
     for (String name : mapping.getAllNames()) {
       attributes.add(
           new MBeanAttributeInfo(
               name != null
                   ? name + "." + REQUESTS_PER_SECOND_ATTRIBUTE_NAME
                   : REQUESTS_PER_SECOND_ATTRIBUTE_NAME,
               Double.class.getName(),
               null,
               true,
               false,
               false));
       attributes.add(
           new MBeanAttributeInfo(
               name != null
                   ? name + "." + AVERAGE_REQUEST_DURATION_ATTRIBUTE_NAME
                   : AVERAGE_REQUEST_DURATION_ATTRIBUTE_NAME,
               Double.class.getName(),
               null,
               true,
               false,
               false));
     }
   }
   return attributes.toArray(new MBeanAttributeInfo[attributes.size()]);
 }
 static void decodeTouches(String str, List<Touch> result) {
   if (str.length() == 0) {
     return;
   }
   List<String> s = new ArrayList<String>();
   s = new ArrayList<String>(Arrays.asList(str.split(";")));
   if (s.size() % 9 != 0) {
     logger.error(
         new StringWriter()
             .append("Could not parse touches array '")
             .append(str)
             .append("'")
             .toString());
     return;
   }
   try {
     for (int i = 0; i < s.size(); i += 9) {
       result.add(
           new Touch(
               asUInt(s.get(i + 0)),
               asInt(s.get(i + 1)),
               asInt(s.get(i + 2)),
               asInt(s.get(i + 3)),
               asInt(s.get(i + 4)),
               asInt(s.get(i + 5)),
               asInt(s.get(i + 6)),
               asInt(s.get(i + 7)),
               asInt(s.get(i + 8))));
     }
   } catch (NumberFormatException ee) {
     logger.error(
         new StringWriter()
             .append("Could not parse touches array '")
             .append(str)
             .append("'")
             .toString());
     return;
   }
 }
示例#9
0
  public StringBuilder listToCSV(List list) {
    StringBuilder csv = new StringBuilder();
    csv.append(
        "Work Product,,Name,State,Owner,Plan Estimate,Task Estimate,Task Remaining,Time Spent\n");

    for (int i = 0; i < list.size(); i++) {
      Map map = (Map) list.get(i);
      String type = (String) map.get("type");
      String formattedId = (String) map.get("formattedId");
      String name = (String) map.get("name");
      String taskStatus = (String) map.get("taskStatus");
      String owner = (String) map.get("owner");
      String planEstimate = (String) map.get("planEstimate");
      String taskEstimateTotal = (String) map.get("taskEstimateTotal");
      String taskRemainingTotal = (String) map.get("taskRemainingTotal");
      String taskTimeSpentTotal = (String) map.get("taskTimeSpentTotal");

      if ("task".equals(type)) {
        csv.append("," + formattedId + ",");
      } else if ("userstory".equals(type)) {
        csv.append(formattedId + ",,");
      } else if ("iteration".equals(type)) {
        csv.append(",,");
      }

      if (planEstimate == null) {
        planEstimate = "";
      }

      if (taskEstimateTotal == null) {
        taskEstimateTotal = "";
      }

      if (taskRemainingTotal == null) {
        taskRemainingTotal = "";
      }

      csv.append("\"" + name + "\",");
      csv.append(taskStatus + ",");
      csv.append(owner + ",");
      csv.append(planEstimate + ",");
      csv.append(taskEstimateTotal + ",");
      csv.append(taskRemainingTotal + ",");
      csv.append(taskTimeSpentTotal + "\n");
    }

    return csv;
  }
示例#10
0
 private void expand(int row, int column, int rowSpan, int columnSpan) {
   int newRowCount = Math.max(this.getRowCount(), row + rowSpan);
   int newColumnCount = Math.max(this.getColumnCount(), column + columnSpan);
   int extraRows = newRowCount - this.getRowCount();
   int extraColumns = newColumnCount - this.getColumnCount();
   if (extraColumns > 0) {
     for (int a_row = 0; a_row < this.getRowCount(); ++a_row) {
       {
         int insertPos = this.grid_.items_.get(a_row).size();
         for (int ii = 0; ii < (extraColumns); ++ii)
           this.grid_.items_.get(a_row).add(insertPos + ii, new Grid.Item());
       }
       ;
     }
     {
       int insertPos = this.grid_.columns_.size();
       for (int ii = 0; ii < (extraColumns); ++ii)
         this.grid_.columns_.add(insertPos + ii, new Grid.Section());
     }
     ;
   }
   if (extraRows > 0) {
     {
       int insertPos = this.grid_.items_.size();
       for (int ii = 0; ii < (extraRows); ++ii)
         this.grid_.items_.add(insertPos + ii, new ArrayList<Grid.Item>());
     }
     ;
     for (int i = 0; i < extraRows; ++i) {
       final List<Grid.Item> items =
           this.grid_.items_.get(this.grid_.items_.size() - extraRows + i);
       {
         int insertPos = items.size();
         for (int ii = 0; ii < (newColumnCount); ++ii) items.add(insertPos + ii, new Grid.Item());
       }
       ;
     }
     {
       int insertPos = this.grid_.rows_.size();
       for (int ii = 0; ii < (extraRows); ++ii)
         this.grid_.rows_.add(insertPos + ii, new Grid.Section());
     }
     ;
   }
 }
  private static void addChild(UIComponent parent, String prevId, UIComponent child) {
    if (parent != null) {
      List<UIComponent> children = parent.getChildren();
      int size = children.size();
      boolean hasPrev = prevId == null;

      int i = 0;
      for (; i < size; i++) {
        UIComponent oldChild = children.get(i);

        if (hasPrev && oldChild.getId() != null) {
          children.add(i, child);

          return;
        } else if (prevId != null && prevId.equals(oldChild.getId())) hasPrev = true;
      }

      parent.getChildren().add(child);
    }
  }
  public String buildServiceOptions(String rule) throws SQLException {
    List services = NotificationFactory.getInstance().getServiceNames();
    Collections.sort(
        services,
        new Comparator() {
          public int compare(Object o1, Object o2) {
            return ((String) o1).compareToIgnoreCase((String) o2);
          }
        });
    StringBuffer buffer = new StringBuffer();

    for (int i = 0; i < services.size(); i++) {
      if (rule != null && rule.indexOf((String) services.get(i)) > 0) {
        buffer.append(
            "<option selected VALUE='" + services.get(i) + "'>" + services.get(i) + "</option>");
      } else {
        buffer.append("<option VALUE='" + services.get(i) + "'>" + services.get(i) + "</option>");
      }
    }

    return buffer.toString();
  }
示例#13
0
  public StringBuilder listToCSVForUserView(List list) {
    StringBuilder csv = new StringBuilder();

    csv.append(
        "Project,Iteration,Work Product,Name,State,Owner,Task Estimate,Task Remaining,Time Spent\n");

    for (int i = 0; i < list.size(); i++) {
      Map map = (Map) list.get(i);
      String projectName = (String) map.get("projectName");
      String iterationName = (String) map.get("iterationName");
      String formattedId = (String) map.get("taskFormattedId");
      String taskName = (String) map.get("taskName");
      String taskState = (String) map.get("taskState");
      String owner = (String) map.get("owner");
      String taskEstimate = (String) map.get("taskEstimate");
      String taskRemaining = (String) map.get("taskRemaining");
      String taskTimeSpent = (String) map.get("hours");

      if (taskEstimate == null) {
        taskEstimate = "";
      }

      if (taskRemaining == null) {
        taskRemaining = "";
      }

      csv.append("" + projectName + ",");
      csv.append("\"" + iterationName + "\",");
      csv.append(formattedId + ",");
      csv.append(taskName + ",");
      csv.append(taskState + ",");
      csv.append(owner + ",");
      csv.append(taskEstimate + ",");
      csv.append(taskRemaining + ",");
      csv.append(taskTimeSpent + "\n");
    }

    return csv;
  }
  public String buildServiceList(String rule) throws SQLException {
    if (rule == null) {
      return "";
    }

    List services = NotificationFactory.getInstance().getServiceNames();
    Collections.sort(
        services,
        new Comparator() {
          public int compare(Object o1, Object o2) {
            return ((String) o1).compareToIgnoreCase((String) o2);
          }
        });
    StringBuffer buffer = new StringBuffer();

    for (int i = 0; i < services.size(); i++) {
      if (rule.indexOf((String) services.get(i)) > 0) {
        buffer.append(services.get(i)).append("</br>");
      }
    }

    return buffer.toString();
  }
  /**
   * Creates REST request.
   *
   * @param cmd Command.
   * @param params Parameters.
   * @return REST request.
   * @throws GridException If creation failed.
   */
  @Nullable
  private GridRestRequest createRequest(
      GridRestCommand cmd, Map<String, Object> params, ServletRequest req) throws GridException {
    GridRestRequest restReq;

    switch (cmd) {
      case CACHE_GET:
      case CACHE_GET_ALL:
      case CACHE_PUT:
      case CACHE_PUT_ALL:
      case CACHE_REMOVE:
      case CACHE_REMOVE_ALL:
      case CACHE_ADD:
      case CACHE_CAS:
      case CACHE_METRICS:
      case CACHE_REPLACE:
      case CACHE_DECREMENT:
      case CACHE_INCREMENT:
      case CACHE_APPEND:
      case CACHE_PREPEND:
        {
          GridRestCacheRequest restReq0 = new GridRestCacheRequest();

          restReq0.cacheName((String) params.get("cacheName"));
          restReq0.key(params.get("key"));
          restReq0.value(params.get("val"));
          restReq0.value2(params.get("val2"));

          Object val1 = params.get("val1");

          if (val1 != null) restReq0.value(val1);

          restReq0.cacheFlags(intValue("cacheFlags", params, 0));
          restReq0.ttl(longValue("exp", params, null));
          restReq0.initial(longValue("init", params, null));
          restReq0.delta(longValue("delta", params, null));

          if (cmd == CACHE_GET_ALL || cmd == CACHE_PUT_ALL || cmd == CACHE_REMOVE_ALL) {
            List<Object> keys = values("k", params);
            List<Object> vals = values("v", params);

            if (keys.size() < vals.size())
              throw new GridException(
                  "Number of keys must be greater or equals to number of values.");

            Map<Object, Object> map = U.newHashMap(keys.size());

            Iterator<Object> keyIt = keys.iterator();
            Iterator<Object> valIt = vals.iterator();

            while (keyIt.hasNext()) map.put(keyIt.next(), valIt.hasNext() ? valIt.next() : null);

            restReq0.values(map);
          }

          restReq = restReq0;

          break;
        }

      case TOPOLOGY:
      case NODE:
        {
          GridRestTopologyRequest restReq0 = new GridRestTopologyRequest();

          restReq0.includeMetrics(Boolean.parseBoolean((String) params.get("mtr")));
          restReq0.includeAttributes(Boolean.parseBoolean((String) params.get("attr")));

          restReq0.nodeIp((String) params.get("ip"));

          restReq0.nodeId(uuidValue("id", params));

          restReq = restReq0;

          break;
        }

      case EXE:
      case RESULT:
      case NOOP:
        {
          GridRestTaskRequest restReq0 = new GridRestTaskRequest();

          restReq0.taskId((String) params.get("id"));
          restReq0.taskName((String) params.get("name"));

          restReq0.params(values("p", params));

          restReq0.async(Boolean.parseBoolean((String) params.get("async")));

          restReq0.timeout(longValue("timeout", params, 0L));

          restReq = restReq0;

          break;
        }

      case LOG:
        {
          GridRestLogRequest restReq0 = new GridRestLogRequest();

          restReq0.path((String) params.get("path"));

          restReq0.from(intValue("from", params, -1));
          restReq0.to(intValue("to", params, -1));

          restReq = restReq0;

          break;
        }

      case VERSION:
        {
          restReq = new GridRestRequest();

          break;
        }

      default:
        throw new GridException("Invalid command: " + cmd);
    }

    restReq.address(new InetSocketAddress(req.getRemoteAddr(), req.getRemotePort()));

    restReq.command(cmd);

    if (params.containsKey("gridgain.login") || params.containsKey("gridgain.password")) {
      GridSecurityCredentials cred =
          new GridSecurityCredentials(
              (String) params.get("gridgain.login"), (String) params.get("gridgain.password"));

      restReq.credentials(cred);
    }

    String clientId = (String) params.get("clientId");

    try {
      if (clientId != null) restReq.clientId(UUID.fromString(clientId));
    } catch (Exception ignored) {
      // Ignore invalid client id. Rest handler will process this logic.
    }

    String destId = (String) params.get("destId");

    try {
      if (destId != null) restReq.destinationId(UUID.fromString(destId));
    } catch (IllegalArgumentException ignored) {
      // Don't fail - try to execute locally.
    }

    String sesTokStr = (String) params.get("sessionToken");

    try {
      if (sesTokStr != null) restReq.sessionToken(U.hexString2ByteArray(sesTokStr));
    } catch (IllegalArgumentException ignored) {
      // Ignore invalid session token.
    }

    return restReq;
  }
示例#16
0
  /**
   * Search for pages matching a query, eliminating excessive hits with matching values for a named
   * field. Hits after the first <code>maxHitsPerDup</code> are removed from results. The remaining
   * hits have {@link Hit#moreFromDupExcluded()} set.
   *
   * <p>If maxHitsPerDup is zero then all hits are returned.
   *
   * @param query query
   * @param numHits number of requested hits
   * @param maxHitsPerDup the maximum hits returned with matching values, or zero
   * @param dedupField field name to check for duplicates
   * @param sortField Field to sort on (or null if no sorting).
   * @param reverse True if we are to reverse sort by <code>sortField</code>.
   * @return Hits the matching hits
   * @throws IOException
   */
  public Hits search(
      Query query,
      int numHits,
      int maxHitsPerDup,
      String dedupField,
      String sortField,
      boolean reverse)
      throws IOException {
    if (maxHitsPerDup <= 0) // disable dup checking
    return search(query, numHits, dedupField, sortField, reverse);

    final float rawHitsFactor = this.conf.getFloat("searcher.hostgrouping.rawhits.factor", 2.0f);
    int numHitsRaw = (int) (numHits * rawHitsFactor);
    if (LOG.isInfoEnabled()) {
      LOG.info("searching for " + numHitsRaw + " raw hits");
    }
    Hits hits = searchBean.search(query, numHitsRaw, dedupField, sortField, reverse);
    final long total = hits.getTotal();
    final Map<String, DupHits> dupToHits = new HashMap<String, DupHits>();
    final List<Hit> resultList = new ArrayList<Hit>();
    final Set<Hit> seen = new HashSet<Hit>();
    final List<String> excludedValues = new ArrayList<String>();
    boolean totalIsExact = true;
    for (int rawHitNum = 0; rawHitNum < hits.getTotal(); rawHitNum++) {
      // get the next raw hit
      if (rawHitNum >= hits.getLength()) {
        // optimize query by prohibiting more matches on some excluded values
        final Query optQuery = (Query) query.clone();
        for (int i = 0; i < excludedValues.size(); i++) {
          if (i == MAX_PROHIBITED_TERMS) break;
          optQuery.addProhibitedTerm(excludedValues.get(i), dedupField);
        }
        numHitsRaw = (int) (numHitsRaw * rawHitsFactor);
        if (LOG.isInfoEnabled()) {
          LOG.info("re-searching for " + numHitsRaw + " raw hits, query: " + optQuery);
        }
        hits = searchBean.search(optQuery, numHitsRaw, dedupField, sortField, reverse);
        if (LOG.isInfoEnabled()) {
          LOG.info("found " + hits.getTotal() + " raw hits");
        }
        rawHitNum = -1;
        continue;
      }

      final Hit hit = hits.getHit(rawHitNum);
      if (seen.contains(hit)) continue;
      seen.add(hit);

      // get dup hits for its value
      final String value = hit.getDedupValue();
      DupHits dupHits = dupToHits.get(value);
      if (dupHits == null) dupToHits.put(value, dupHits = new DupHits());

      // does this hit exceed maxHitsPerDup?
      if (dupHits.size() == maxHitsPerDup) { // yes -- ignore the hit
        if (!dupHits.maxSizeExceeded) {

          // mark prior hits with moreFromDupExcluded
          for (int i = 0; i < dupHits.size(); i++) {
            dupHits.get(i).setMoreFromDupExcluded(true);
          }
          dupHits.maxSizeExceeded = true;

          excludedValues.add(value); // exclude dup
        }
        totalIsExact = false;
      } else { // no -- collect the hit
        resultList.add(hit);
        dupHits.add(hit);

        // are we done?
        // we need to find one more than asked for, so that we can tell if
        // there are more hits to be shown
        if (resultList.size() > numHits) break;
      }
    }

    final Hits results = new Hits(total, resultList.toArray(new Hit[resultList.size()]));
    results.setTotalIsExact(totalIsExact);
    return results;
  }
示例#17
0
  public synchronized void doPost(HttpServletRequest request, HttpServletResponse response)
      throws IOException, ServletException {
    HttpSession dbSession = request.getSession();
    JspFactory _jspxFactory = JspFactory.getDefaultFactory();
    PageContext pageContext =
        _jspxFactory.getPageContext(this, request, response, "", true, 8192, true);
    ServletContext dbApplication = dbSession.getServletContext();

    try {
      PrintWriter out = response.getWriter();

      nseer_db_backup1 stock_db = new nseer_db_backup1(dbApplication);
      nseer_db_backup1 crm_db = new nseer_db_backup1(dbApplication);
      if (stock_db.conn((String) dbSession.getAttribute("unit_db_name"))
          && crm_db.conn((String) dbSession.getAttribute("unit_db_name"))) {

        FileKind FileKind = new FileKind();
        ValidataNumber validata = new ValidataNumber();
        ValidataRecord vr = new ValidataRecord();

        counter count = new counter(dbApplication);
        ValidataTag vt = new ValidataTag();
        String register_ID = (String) dbSession.getAttribute("human_IDD");
        String config_id = request.getParameter("config_id");
        String pay_ID = request.getParameter("pay_ID");
        String product_amount = request.getParameter("product_amount");
        int num = Integer.parseInt(product_amount);
        String payer_name = request.getParameter("payer_name");
        String payer_ID = request.getParameter("payer_ID");
        String reason = request.getParameter("reason");
        String not_return_tag = request.getParameter("not_return_tag");
        String register = request.getParameter("register");
        String register_time = request.getParameter("register_time");
        String demand_return_time = request.getParameter("demand_return_time");
        String sales_name = request.getParameter("sales_name");
        String sales_ID = request.getParameter("sales_ID");
        String bodyc = new String(request.getParameter("remark").getBytes("UTF-8"), "UTF-8");
        String remark = exchange.toHtml(bodyc);
        String time = "";
        java.util.Date now = new java.util.Date();
        SimpleDateFormat formatter = new SimpleDateFormat("yyyyMMdd");
        time = formatter.format(now);
        String[] product_IDn = request.getParameterValues("product_ID");
        String[] amountn = request.getParameterValues("amount");
        if (num == 0 && product_IDn.length == 1) {
          response.sendRedirect("draft/crm/credit_ok_a.jsp?pay_ID=" + pay_ID);
        } else {
          int p = 0;
          for (int i = 1; i <= num; i++) {
            String tem_amount = "amount" + i;
            String amount = request.getParameter(tem_amount);
            if (amount.equals("")) amount = "0";
            if (!validata.validata(amount)) {
              p++;
            }
          }
          int n = 0;
          String product_ID_group = "";
          for (int j = 1; j < product_IDn.length; j++) {
            product_ID_group += product_IDn[j] + ",";
            if (amountn[j].equals("")) amountn[j] = "0";
            if (!validata.validata(amountn[j])) {
              p++;
            }
          }
          for (int i = 1; i <= num; i++) {
            String tem_product_ID = "product_ID" + i;
            String product_ID = request.getParameter(tem_product_ID);
            if (product_ID_group.indexOf(product_ID) != -1) n++;
          }
          if (vt.validata(
                      (String) dbSession.getAttribute("unit_db_name"),
                      "stock_apply_pay",
                      "pay_ID",
                      pay_ID,
                      "check_tag")
                  .equals("9")
              || vt.validata(
                      (String) dbSession.getAttribute("unit_db_name"),
                      "stock_apply_pay",
                      "pay_ID",
                      pay_ID,
                      "check_tag")
                  .equals("5")) {

            if (p == 0) {
              try {
                if (n == 0) {
                  boolean flag = false;
                  List rsList = GetWorkflow.getList(crm_db, "crm_config_workflow", "05");
                  String[] elem = new String[3];
                  if (rsList.size() == 0) {
                    flag = true;
                  }
                  String sqll = "";
                  String[] aaa1 =
                      FileKind.getKind(
                          (String) dbSession.getAttribute("unit_db_name"),
                          "crm_file",
                          "customer_ID",
                          payer_ID);

                  String stock_pay_ID =
                      NseerId.getId("stock/pay", (String) dbSession.getAttribute("unit_db_name"));
                  double demand_amount = 0.0d;
                  double list_price_sum = 0.0d;
                  double cost_price_sum = 0.0d;

                  for (int i = 1; i <= num; i++) {
                    String tem_product_name = "product_name" + i;
                    String tem_product_ID = "product_ID" + i;
                    String tem_available_amount = "available_amount" + i;
                    String tem_amount = "amount" + i;
                    String tem_list_price = "list_price" + i;
                    String tem_cost_price = "cost_price" + i;
                    String tem_type = "type" + i;
                    String tem_amount_unit = "amount_unit" + i;
                    String product_name = request.getParameter(tem_product_name);
                    String product_ID = request.getParameter(tem_product_ID);
                    String available_amount = request.getParameter(tem_available_amount);
                    String amount = request.getParameter(tem_amount);
                    if (amount.equals("")) amount = "0";
                    String list_price2 = request.getParameter(tem_list_price);
                    String cost_price = request.getParameter(tem_cost_price);
                    String type = request.getParameter(tem_type);
                    StringTokenizer tokenTO3 = new StringTokenizer(list_price2, ",");
                    String list_price = "";
                    while (tokenTO3.hasMoreTokens()) {
                      String list_price1 = tokenTO3.nextToken();
                      list_price += list_price1;
                    }
                    String amount_unit = request.getParameter(tem_amount_unit);
                    double list_price_subtotal =
                        Double.parseDouble(list_price) * Double.parseDouble(amount);
                    list_price_sum += list_price_subtotal;
                    double cost_price_subtotal =
                        Double.parseDouble(cost_price) * Double.parseDouble(amount);
                    cost_price_sum += cost_price_subtotal;
                    demand_amount += Double.parseDouble(amount);
                    String sql1 =
                        "update stock_apply_pay_details set amount='"
                            + amount
                            + "',list_price='"
                            + list_price
                            + "',list_price_subtotal='"
                            + list_price_subtotal
                            + "',cost_price='"
                            + cost_price
                            + "',subtotal='"
                            + cost_price_subtotal
                            + "' where pay_ID='"
                            + pay_ID
                            + "' and details_number='"
                            + i
                            + "'";
                    stock_db.executeUpdate(sql1);
                    if (flag) {
                      if (type.equals("物料") || type.equals("外购商品")) {
                        String sql2 =
                            "insert into stock_pay_details(pay_ID,details_number,product_ID,product_name,type,list_price,list_price_subtotal,cost_price,subtotal,amount,unpay_amount,apply_manufacture_amount,apply_purchase_amount) values('"
                                + stock_pay_ID
                                + "','"
                                + i
                                + "','"
                                + product_ID
                                + "','"
                                + product_name
                                + "','"
                                + type
                                + "','"
                                + list_price
                                + "','"
                                + list_price_subtotal
                                + "','"
                                + cost_price
                                + "','"
                                + cost_price_subtotal
                                + "','"
                                + amount
                                + "','"
                                + amount
                                + "','0','"
                                + amount
                                + "')";
                        stock_db.executeUpdate(sql2);
                      } else if (type.equals("商品") || type.equals("部件") || type.equals("委外部件")) {
                        String sql2 =
                            "insert into stock_pay_details(pay_ID,details_number,product_ID,product_name,type,list_price,list_price_subtotal,cost_price,subtotal,amount,unpay_amount,apply_manufacture_amount,apply_purchase_amount) values('"
                                + stock_pay_ID
                                + "','"
                                + i
                                + "','"
                                + product_ID
                                + "','"
                                + product_name
                                + "','"
                                + type
                                + "','"
                                + list_price
                                + "','"
                                + list_price_subtotal
                                + "','"
                                + cost_price
                                + "','"
                                + cost_price_subtotal
                                + "','"
                                + amount
                                + "','"
                                + amount
                                + "','"
                                + amount
                                + "','0')";
                        stock_db.executeUpdate(sql2);
                      }

                      String sql97 =
                          "select * from crm_salecredit_balance_details where crediter_ID='"
                              + payer_ID
                              + "' and product_ID='"
                              + product_ID
                              + "'";
                      ResultSet rs97 = crm_db.executeQuery(sql97);
                      if (rs97.next()) {
                        double balance_amount =
                            rs97.getDouble("amount") + Double.parseDouble(amount);
                        double balance_cost_price_subtotal =
                            rs97.getDouble("subtotal") + cost_price_subtotal;
                        double balance_list_price_subtotal =
                            rs97.getDouble("list_price_subtotal") + list_price_subtotal;

                        String sql96 =
                            "update crm_salecredit_balance_details set amount='"
                                + balance_amount
                                + "',check_tag='1',subtotal='"
                                + balance_cost_price_subtotal
                                + "',list_price_subtotal='"
                                + balance_list_price_subtotal
                                + "' where crediter_ID='"
                                + payer_ID
                                + "' and product_ID='"
                                + product_ID
                                + "'";
                        crm_db.executeUpdate(sql96);
                      } else {
                        String[] aaa =
                            FileKind.getKind(
                                (String) dbSession.getAttribute("unit_db_name"),
                                "design_file",
                                "product_ID",
                                product_ID);
                        String sql95 =
                            "insert into crm_salecredit_balance_details(chain_ID,chain_name,crediter_chain_ID,crediter_chain_name,product_ID,product_name,list_price,list_price_subtotal,cost_price,subtotal,amount,crediter_ID,crediter_name) values('"
                                + aaa[0]
                                + "','"
                                + aaa[1]
                                + "','"
                                + aaa1[0]
                                + "','"
                                + aaa1[1]
                                + "','"
                                + product_ID
                                + "','"
                                + product_name
                                + "','"
                                + list_price
                                + "','"
                                + list_price_subtotal
                                + "','"
                                + cost_price
                                + "','"
                                + cost_price_subtotal
                                + "','"
                                + amount
                                + "','"
                                + payer_ID
                                + "','"
                                + payer_name
                                + "')";
                        crm_db.executeUpdate(sql95);
                      }
                    }
                  }
                  String[] cost_pricen = request.getParameterValues("cost_price");
                  String[] list_pricen = request.getParameterValues("list_price");
                  String[] product_namen = request.getParameterValues("product_name");
                  String[] product_describen = request.getParameterValues("product_describe");
                  String[] amount_unitn = request.getParameterValues("amount_unit");
                  String[] typen = request.getParameterValues("type");
                  for (int i = 1; i < product_IDn.length; i++) {
                    StringTokenizer tokenTO3 = new StringTokenizer(list_pricen[i], ",");
                    String list_price = "";
                    while (tokenTO3.hasMoreTokens()) {
                      String list_price1 = tokenTO3.nextToken();
                      list_price += list_price1;
                    }
                    if (!amountn[i].equals("") && Double.parseDouble(amountn[i]) != 0) {
                      double list_price_subtotal =
                          Double.parseDouble(list_price) * Double.parseDouble(amountn[i]);
                      list_price_sum += list_price_subtotal;
                      double subtotal =
                          Double.parseDouble(cost_pricen[i]) * Double.parseDouble(amountn[i]);
                      cost_price_sum += subtotal;
                      demand_amount += Double.parseDouble(amountn[i]);
                      num++;
                      String sql1 =
                          "insert into stock_apply_pay_details(payer_chain_ID,payer_chain_name,sales_ID,sales_name,payer_ID,payer_name,payer_type,pay_ID,details_number,product_ID,product_name,product_describe,amount,amount_unit,list_price,list_price_subtotal,cost_price,subtotal,type) values ('"
                              + aaa1[0]
                              + "','"
                              + aaa1[1]
                              + "','"
                              + sales_ID
                              + "','"
                              + sales_name
                              + "','"
                              + payer_ID
                              + "','"
                              + payer_name
                              + "','销售赊货','"
                              + pay_ID
                              + "','"
                              + num
                              + "','"
                              + product_IDn[i]
                              + "','"
                              + product_namen[i]
                              + "','"
                              + product_describen[i]
                              + "','"
                              + amountn[i]
                              + "','"
                              + amount_unitn[i]
                              + "','"
                              + list_price
                              + "','"
                              + list_price_subtotal
                              + "','"
                              + cost_pricen[i]
                              + "','"
                              + subtotal
                              + "','"
                              + typen[i]
                              + "')";
                      stock_db.executeUpdate(sql1);
                      // **********************
                      if (rsList.size() == 0) {
                        if (typen[i].equals("物料") || typen[i].equals("外购商品")) {
                          String sql2 =
                              "insert into stock_pay_details(pay_ID,details_number,product_ID,product_name,type,list_price,list_price_subtotal,cost_price,subtotal,amount,unpay_amount,apply_manufacture_amount,apply_purchase_amount) values('"
                                  + stock_pay_ID
                                  + "','"
                                  + num
                                  + "','"
                                  + product_IDn[i]
                                  + "','"
                                  + product_namen[i]
                                  + "','"
                                  + typen[i]
                                  + "','"
                                  + list_price
                                  + "','"
                                  + list_price_subtotal
                                  + "','"
                                  + cost_pricen[i]
                                  + "','"
                                  + subtotal
                                  + "','"
                                  + amountn[i]
                                  + "','"
                                  + amountn[i]
                                  + "','0','"
                                  + amountn[i]
                                  + "')";
                          stock_db.executeUpdate(sql2);
                        } else if (typen[i].equals("商品")
                            || typen[i].equals("部件")
                            || typen[i].equals("委外部件")) {
                          String sql2 =
                              "insert into stock_pay_details(pay_ID,details_number,product_ID,product_name,type,list_price,list_price_subtotal,cost_price,subtotal,amount,unpay_amount,apply_manufacture_amount,apply_purchase_amount) values('"
                                  + stock_pay_ID
                                  + "','"
                                  + num
                                  + "','"
                                  + product_IDn[i]
                                  + "','"
                                  + product_namen[i]
                                  + "','"
                                  + typen[i]
                                  + "','"
                                  + list_price
                                  + "','"
                                  + list_price_subtotal
                                  + "','"
                                  + cost_pricen[i]
                                  + "','"
                                  + subtotal
                                  + "','"
                                  + amountn[i]
                                  + "','"
                                  + amountn[i]
                                  + "','"
                                  + amountn[i]
                                  + "','0')";
                          stock_db.executeUpdate(sql2);
                        }

                        String sql97 =
                            "select * from crm_salecredit_balance_details where crediter_ID='"
                                + payer_ID
                                + "' and product_ID='"
                                + product_IDn[i]
                                + "'";
                        ResultSet rs97 = crm_db.executeQuery(sql97);
                        if (rs97.next()) {
                          double balance_amount =
                              rs97.getDouble("amount") + Double.parseDouble(amountn[i]);
                          double balance_cost_price_subtotal =
                              rs97.getDouble("subtotal") + subtotal;
                          double balance_list_price_subtotal =
                              rs97.getDouble("list_price_subtotal") + list_price_subtotal;

                          String sql96 =
                              "update crm_salecredit_balance_details set amount='"
                                  + balance_amount
                                  + "',check_tag='1',subtotal='"
                                  + balance_cost_price_subtotal
                                  + "',list_price_subtotal='"
                                  + balance_list_price_subtotal
                                  + "' where crediter_ID='"
                                  + payer_ID
                                  + "' and product_ID='"
                                  + product_IDn[i]
                                  + "'";
                          crm_db.executeUpdate(sql96);
                        } else {
                          String[] aaa =
                              FileKind.getKind(
                                  (String) dbSession.getAttribute("unit_db_name"),
                                  "design_file",
                                  "product_ID",
                                  product_IDn[i]);
                          String sql95 =
                              "insert into crm_salecredit_balance_details(chain_ID,chain_name,crediter_chain_ID,crediter_chain_name,product_ID,product_name,list_price,list_price_subtotal,cost_price,subtotal,amount,crediter_ID,crediter_name) values('"
                                  + aaa[0]
                                  + "','"
                                  + aaa[1]
                                  + "','"
                                  + aaa1[0]
                                  + "','"
                                  + aaa1[1]
                                  + "','"
                                  + product_IDn[i]
                                  + "','"
                                  + product_namen[i]
                                  + "','"
                                  + list_price
                                  + "','"
                                  + list_price_subtotal
                                  + "','"
                                  + cost_pricen[i]
                                  + "','"
                                  + subtotal
                                  + "','"
                                  + amountn[i]
                                  + "','"
                                  + payer_ID
                                  + "','"
                                  + payer_name
                                  + "')";
                          crm_db.executeUpdate(sql95);
                        }
                      }
                      // ***************************
                    }
                  }
                  String sql =
                      "update stock_apply_pay set reason='"
                          + reason
                          + "',register='"
                          + register
                          + "',register_time='"
                          + register_time
                          + "',demand_return_time='"
                          + demand_return_time
                          + "',register_time='"
                          + register_time
                          + "',register='"
                          + register
                          + "',remark='"
                          + remark
                          + "',demand_amount='"
                          + demand_amount
                          + "',list_price_sum='"
                          + list_price_sum
                          + "',cost_price_sum='"
                          + cost_price_sum
                          + "',not_return_tag='"
                          + not_return_tag
                          + "' where pay_ID='"
                          + pay_ID
                          + "'";
                  stock_db.executeUpdate(sql);
                  if (flag) {
                    sql = "update stock_apply_pay set check_tag='1' where pay_ID='" + pay_ID + "'";
                    stock_db.executeUpdate(sql);
                    if (!vr.validata(
                        (String) dbSession.getAttribute("unit_db_name"),
                        "stock_pay",
                        "reasonexact",
                        pay_ID)) {
                      String sql4 =
                          "insert into stock_pay(pay_ID,reason,reasonexact,reasonexact_details,demand_amount,list_price_sum,cost_price_sum,register,register_time) values('"
                              + stock_pay_ID
                              + "','"
                              + reason
                              + "','"
                              + pay_ID
                              + "','"
                              + payer_name
                              + "','"
                              + demand_amount
                              + "','"
                              + list_price_sum
                              + "','"
                              + cost_price_sum
                              + "','"
                              + register
                              + "','"
                              + register_time
                              + "')";
                      stock_db.executeUpdate(sql4);
                    }

                    String sql98 = "select * from crm_file where customer_ID='" + payer_ID + "'";
                    ResultSet rs98 = crm_db.executeQuery(sql98);
                    if (rs98.next()) {
                      double salecredit_list_price_sum =
                          rs98.getDouble("salecredit_list_price_sum") + list_price_sum;
                      double salecredit_cost_price_sum =
                          rs98.getDouble("salecredit_cost_price_sum") + cost_price_sum;

                      String sql99 =
                          "update crm_file set credit_yes_or_not_tag='1',salecredit_list_price_sum='"
                              + salecredit_list_price_sum
                              + "',salecredit_cost_price_sum='"
                              + salecredit_cost_price_sum
                              + "' where customer_ID='"
                              + payer_ID
                              + "' ";
                      crm_db.executeUpdate(sql99);
                    }
                  } else {
                    sql = "update stock_apply_pay set check_tag='0' where pay_ID='" + pay_ID + "'";
                    stock_db.executeUpdate(sql);
                    Iterator ite = rsList.iterator();
                    while (ite.hasNext()) {
                      elem = (String[]) ite.next();
                      sql =
                          "insert into crm_workflow(config_id,object_ID,describe1,describe2) values ('"
                              + elem[0]
                              + "','"
                              + pay_ID
                              + "','"
                              + elem[1]
                              + "','"
                              + elem[2]
                              + "')";
                      crm_db.executeUpdate(sql);
                    }
                  }

                  response.sendRedirect("draft/crm/credit_ok.jsp?finished_tag=8");
                } else {

                  response.sendRedirect(
                      "draft/crm/credit_ok.jsp?finished_tag=7&pay_ID=" + pay_ID + "");
                }
              } catch (Exception ex) {
                ex.printStackTrace();
              }
            } else {

              response.sendRedirect("draft/crm/credit_ok.jsp?finished_tag=6&pay_ID=" + pay_ID + "");
            }
          } else {

            response.sendRedirect("draft/crm/credit_ok.jsp?finished_tag=9");
          }
        }
        stock_db.commit();
        crm_db.commit();
        stock_db.close();
        crm_db.close();
      } else {
        response.sendRedirect("error_conn.htm");
      }
    } catch (Exception ex) {
      ex.printStackTrace();
    }
  }
示例#18
0
  private void datasetInfoXml(RadarType radarType, String pathInfo, PrintWriter pw)
      throws IOException {

    try {
      pw.println(
          "<catalog xmlns=\"http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" name=\"Radar Data\" version=\"1.0.1\">\n");
      // add service
      pw.println(
          "  <service name=\"radarServer\" base=\"/thredds/radarServer/\" serviceType=\"DQC\" />\n");
      pathInfo = pathInfo.replace("/dataset.xml", "");
      pathInfo = pathInfo.replace("/catalog.xml", "");
      if (pathInfo.startsWith("/")) pathInfo = pathInfo.substring(1);
      for (int i = 0; i < datasets.size(); i++) {
        InvDatasetScan ds = (InvDatasetScan) datasets.get(i);
        if (!(pathInfo.equals(ds.getPath()))) {
          continue;
        }

        pw.println("  <dataset ID=\"" + ds.getID() + "\" serviceName=\"radarServer\">");

        pw.println("    <urlpath>" + ds.getPath() + "</urlpath>");
        pw.println("    <dataType>" + ds.getDataType() + "</dataType>");

        pw.println("    <dataFormat>" + ds.getDataFormatType() + "</dataFormat>");

        pw.println("   <serviceName>radarServer</serviceName>");

        pw.println("    <metadata inherited=\"true\">");

        pw.println("    <documentation type=\"summary\">" + ds.getSummary() + "</documentation>");
        CalendarDateRange dr = ds.getCalendarDateCoverage();
        pw.println("      <TimeSpan>");
        pw.print("        <start>");
        if (pathInfo.contains("IDD")) {
          pw.print(rm.getStartDateTime(ds.getPath()));
        } else {
          pw.print(dr.getStart().toString());
        }
        pw.println("</start>");
        pw.println("        <end>" + dr.getEnd().toString() + "</end>");
        pw.println("      </TimeSpan>");
        ThreddsMetadata.GeospatialCoverage gc = ds.getGeospatialCoverage();
        LatLonRect bb = new LatLonRect();
        gc.setBoundingBox(bb);
        pw.println("      <LatLonBox>");
        pw.println("        <north>" + gc.getLatNorth() + "</north>");
        pw.println("        <south>" + gc.getLatSouth() + "</south>");
        pw.println("        <east>" + gc.getLonEast() + "</east>");
        pw.println("        <west>" + gc.getLonWest() + "</west>");
        pw.println("      </LatLonBox>");

        ThreddsMetadata.Variables cvs = (ThreddsMetadata.Variables) ds.getVariables().get(0);
        List vl = cvs.getVariableList();

        pw.println("      <Variables>");
        for (int j = 0; j < vl.size(); j++) {
          ThreddsMetadata.Variable v = (ThreddsMetadata.Variable) vl.get(j);
          pw.println(
              "        <variable name=\""
                  + v.getName()
                  + "\" vocabulary_name=\""
                  + v.getVocabularyName()
                  + "\" units=\""
                  + v.getUnits()
                  + "\" />");
        }
        pw.println("      </Variables>");
        String[] stations = rm.stationsDS(radarType, dataLocation.get(ds.getPath()));
        rm.printStations(stations, pw, radarType);

        pw.println("    </metadata>");
        pw.println("  </dataset>");
      }
      pw.println("</catalog>");
      pw.flush();
    } catch (Throwable e) {
      log.error("RadarServer.datasetInfoXml", e);
    }
    return;
  }
示例#19
0
  // public List getUserStoryList(String sessionId,String iterationId,ServletOutputStream out) {
  public List getUserStoryList(String sessionId, String iterationId, PrintWriter out) {

    List<Map> list = new ArrayList<Map>();

    statusMap.put(sessionId, "0");

    try {

      String apiURL =
          rallyApiHost
              + "/hierarchicalrequirement?"
              + "query=(Iteration%20=%20"
              + rallyApiHost
              + "/iteration/"
              + iterationId
              + ")&fetch=true&start=1&pagesize=100";

      log.info("getUserStoryList apiURL=" + apiURL);

      String responseXML = getRallyXML(apiURL);

      org.jdom.input.SAXBuilder bSAX = new org.jdom.input.SAXBuilder();
      org.jdom.Document doc = bSAX.build(new StringReader(responseXML));
      Element root = doc.getRootElement();

      XPath xpath = XPath.newInstance("//Object");
      List xlist = xpath.selectNodes(root);

      int totalSteps = xlist.size() + 1;
      int currentStep = 0;

      List taskRefLink = new ArrayList();

      Iterator iter = xlist.iterator();
      while (iter.hasNext()) {
        double totalTimeSpent = 0.0D;

        Map map = new HashMap();

        Element item = (Element) iter.next();
        String objId = item.getChildText("ObjectID");
        String name = item.getChildText("Name");
        String planEstimate = item.getChildText("PlanEstimate");
        String formattedId = item.getChildText("FormattedID");

        String taskActualTotal = item.getChildText("TaskActualTotal");
        String taskEstimateTotal = item.getChildText("TaskEstimateTotal");
        String taskRemainingTotal = item.getChildText("TaskRemainingTotal");
        String scheduleState = item.getChildText("ScheduleState");

        Element ownerElement = item.getChild("Owner");

        String owner = "";
        String ownerRef = "";

        if (ownerElement != null) {
          owner = ownerElement.getAttributeValue("refObjectName");
        }

        Element taskElements = item.getChild("Tasks");
        // List taskElementList=taskElements.getContent();
        List taskElementList = taskElements.getChildren();

        List taskList = new ArrayList();

        log.info("taskElements.getChildren=" + taskElements);
        log.info("taskList=" + taskElementList);

        for (int i = 0; i < taskElementList.size(); i++) {
          Element taskElement = (Element) taskElementList.get(i);

          String taskRef = taskElement.getAttributeValue("ref");

          String[] objectIdArr = taskRef.split("/");
          String objectId = objectIdArr[objectIdArr.length - 1];

          log.info("objectId=" + objectId);

          // Map taskMap=getTaskMap(taskRef);
          Map taskMap = getTaskMapBatch(objectId);

          double taskTimeSpentTotal =
              Double.parseDouble((String) taskMap.get("taskTimeSpentTotal"));
          totalTimeSpent += taskTimeSpentTotal;
          taskList.add(taskMap);
        }

        map.put("type", "userstory");
        map.put("formattedId", formattedId);
        map.put("name", name);
        map.put("taskStatus", scheduleState);
        map.put("owner", owner);
        map.put("planEstimate", planEstimate);
        map.put("taskEstimateTotal", taskEstimateTotal);
        map.put("taskRemainingTotal", taskRemainingTotal);
        map.put("taskTimeSpentTotal", "" + totalTimeSpent);

        list.add(map);
        list.addAll(taskList);

        ++currentStep;
        double percentage = 100.0D * currentStep / totalSteps;
        String status = "" + Math.round(percentage);
        statusMap.put(sessionId, status);

        out.println("<script>parent.updateProcessStatus('" + status + "%')</script>" + status);
        out.flush();
        log.info("out.flush..." + status);

        // log.info("status="+status+" sessionId="+sessionId);
        // log.info("L1 statusMap="+statusMap+" "+statusMap.hashCode());

      }

      double planEstimate = 0.0D;
      double taskEstimateTotal = 0.0D;
      double taskRemainingTotal = 0.0D;
      double taskTimeSpentTotal = 0.0D;
      Map iterationMap = new HashMap();
      for (Map map : list) {
        String type = (String) map.get("type");

        String planEstimateStr = (String) map.get("planEstimate");

        log.info("planEstimateStr=" + planEstimateStr);

        if ("userstory".equals(type)) {

          if (planEstimateStr != null) {
            planEstimate += Double.parseDouble(planEstimateStr);
          }
          taskEstimateTotal += Double.parseDouble((String) map.get("taskEstimateTotal"));
          taskRemainingTotal += Double.parseDouble((String) map.get("taskRemainingTotal"));
          taskTimeSpentTotal += Double.parseDouble((String) map.get("taskTimeSpentTotal"));
        }
      }

      apiURL = rallyApiHost + "/iteration/" + iterationId + "?fetch=true";
      log.info("iteration apiURL=" + apiURL);
      responseXML = getRallyXML(apiURL);

      bSAX = new org.jdom.input.SAXBuilder();
      doc = bSAX.build(new StringReader(responseXML));
      root = doc.getRootElement();

      xpath = XPath.newInstance("//Iteration");
      xlist = xpath.selectNodes(root);

      String projName = "";
      String iterName = "";
      String iterState = "";

      iter = xlist.iterator();
      while (iter.hasNext()) {
        Element item = (Element) iter.next();

        iterName = item.getChildText("Name");
        iterState = item.getChildText("State");
        Element projElement = item.getChild("Project");
        projName = projElement.getAttributeValue("refObjectName");
      }

      iterationMap.put("type", "iteration");
      iterationMap.put("formattedId", "");
      iterationMap.put("name", projName + " - " + iterName);
      iterationMap.put("taskStatus", iterState);
      iterationMap.put("owner", "");

      iterationMap.put("planEstimate", "" + planEstimate);
      iterationMap.put("taskEstimateTotal", "" + taskEstimateTotal);
      iterationMap.put("taskRemainingTotal", "" + taskRemainingTotal);
      iterationMap.put("taskTimeSpentTotal", "" + taskTimeSpentTotal);

      list.add(0, iterationMap);

      statusMap.put(sessionId, "100");

      log.info("L2 statusMap=" + statusMap);

      log.info("L2 verify=" + getProcessStatus(sessionId));
      log.info("-----------");

      // String jsonData=JsonUtil.encodeObj(list);
      String jsonData = JSONValue.toJSONString(list);

      out.println("<script>parent.tableResult=" + jsonData + "</script>");
      out.println("<script>parent.showTableResult()</script>");

    } catch (Exception ex) {
      log.error("ERROR: ", ex);
    }

    return list;
  }
示例#20
0
  public List getUserTimeSpentByDate(String userObjectId, String startDate, String endDate) {
    List list = new ArrayList();

    log.info("userObjectId=" + userObjectId);
    log.info("startDate=" + startDate);
    log.info("endDate=" + endDate);

    try {

      String apiUrl =
          rallyApiHost
              + "/timeentryvalue?query=((TimeEntryItem.User.ObjectId%20=%20"
              + userObjectId
              + ")"
              + "%20and%20((DateVal%20%3E=%20"
              + startDate
              + ")%20and%20(DateVal%20%3C=%20"
              + endDate
              + ")))"
              + "&start=1&pagesize=100&fetch=true";

      log.info("apiUrl=" + apiUrl);

      String responseXML = getRallyXML(apiUrl);

      log.info("responseXML=" + responseXML);

      org.jdom.input.SAXBuilder bSAX = new org.jdom.input.SAXBuilder();
      org.jdom.Document doc = bSAX.build(new StringReader(responseXML));
      Element root = doc.getRootElement();

      XPath xpath = XPath.newInstance("//Object");
      List xlist = xpath.selectNodes(root);

      Iterator iter = xlist.iterator();
      while (iter.hasNext()) {

        // Map map=new HashMap();

        Element item = (Element) iter.next();

        String hours = item.getChildText("Hours");

        Element timeEntryItemElement = item.getChild("TimeEntryItem");
        String timeEntryItemRef = timeEntryItemElement.getAttributeValue("ref");

        Map map = getUserStoryTaskMap(timeEntryItemRef);

        String checkTaskId = (String) map.get("taskFormattedId");

        boolean isExist = false;
        for (int i = 0; i < list.size(); i++) {
          Map existMap = (Map) list.get(i);

          log.info("existMap=" + existMap);

          String existTaskId = (String) existMap.get("taskFormattedId");

          log.info("existTaskId=" + existTaskId);
          log.info("checkTaskId=" + checkTaskId);

          if (existTaskId != null && existTaskId.equals(checkTaskId)) {
            isExist = true;
            String existHours = (String) existMap.get("hours");
            double eHour = 0.0D;
            if (!"".equals(existHours)) {
              eHour = Double.parseDouble(existHours);
            }
            double nHour = 0.0D;

            if (!"".equals(hours)) {
              nHour = Double.parseDouble(hours);
            }

            log.info("nHour=" + nHour);
            log.info("eHour=" + eHour);

            nHour += eHour;
            log.info("2 nHour=" + nHour);
            existMap.put("hours", "" + nHour);

            break;
          }
        }

        if (!isExist) {
          map.put("hours", hours);
          list.add(map);
        }

        log.info("hours=" + hours);
        log.info("timeEntryItemRef=" + timeEntryItemRef);

        // list.add(map);

      }

      Collections.sort(
          list,
          new Comparator<Map<String, String>>() {
            public int compare(Map<String, String> m1, Map<String, String> m2) {
              if (m1.get("projectName") == null || m2.get("projectName") == null) return -1;
              return m1.get("projectName").compareTo(m2.get("projectName"));
            }
          });

      // Sum up the total time
      double totalTaskEstimate = 0.0D;
      double totalTaskRemaining = 0.0D;
      double totalHours = 0.0D;
      for (int i = 0; i < list.size(); i++) {
        Map map = (Map) list.get(i);

        log.info("taskEstimate=" + (String) map.get("taskEstimate"));
        log.info("taskRemaining=" + (String) map.get("taskRemaining"));
        log.info("hours=" + (String) map.get("hours"));

        log.info("map==" + map);

        try {
          double taskEstimate = Double.parseDouble((String) map.get("taskEstimate"));
          double taskRemaining = Double.parseDouble((String) map.get("taskRemaining"));
          double hours = Double.parseDouble((String) map.get("hours"));

          totalTaskEstimate += taskEstimate;
          totalTaskRemaining += taskRemaining;
          totalHours += hours;
        } catch (Exception e) {
          log.info("ERROR in parsing number" + e);
        }
      }

      Map firstMap = new HashMap();

      firstMap.put("taskFormattedId", "");
      firstMap.put("taskName", "");
      firstMap.put("taskState", "");
      firstMap.put("owner", "");
      firstMap.put("taskEstimate", "" + totalTaskEstimate);
      firstMap.put("taskRemaining", "" + totalTaskRemaining);
      firstMap.put("hours", "" + totalHours);
      firstMap.put("projectName", "");
      firstMap.put("iterationName", "");

      list.add(0, firstMap);

    } catch (Exception ex) {
      log.error("", ex);
    }

    return list;
  }
示例#21
0
  public void _jspService(
      javax.servlet.http.HttpServletRequest request,
      javax.servlet.http.HttpServletResponse response)
      throws java.io.IOException, javax.servlet.ServletException {
    com.caucho.jsp.QPageContext pageContext =
        (com.caucho.jsp.QPageContext)
            com.caucho.jsp.QJspFactory.create()
                .getPageContext(this, request, response, "/error.jsp", true, 8192, true);
    javax.servlet.jsp.JspWriter out = (javax.servlet.jsp.JspWriter) pageContext.getOut();
    javax.servlet.ServletConfig config = getServletConfig();
    javax.servlet.Servlet page = this;
    javax.servlet.http.HttpSession session = pageContext.getSession();
    javax.servlet.ServletContext application = pageContext.getServletContext();
    response.setContentType("text/html;charset=UTF-8");
    request.setCharacterEncoding("UTF-8");
    org.myconf.AuthTag _jsp_tag0 = null;
    org.apache.struts.taglib.bean.MessageTag _jsp_tag1 = null;
    org.apache.struts.taglib.html.RewriteTag _jsp_tag2 = null;
    org.apache.struts.taglib.bean.MessageTag _jsp_tag3 = null;
    try {

      // *********************************
      // security
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      if (_jsp_tag0 == null) {
        _jsp_tag0 = new org.myconf.AuthTag();
        _jsp_tag0.setPageContext(pageContext);
        _jsp_tag0.setParent((javax.servlet.jsp.tagext.Tag) null);
        _jsp_tag0.setModule("admin");
      }

      _jsp_tag0.doStartTag();
      _jsp_tag0.setBodyContent(null);
      int _jsp_endTagVar3 = _jsp_tag0.doEndTag();
      if (_jsp_endTagVar3 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);

      // *********************************
      // define
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);

      // *********************************
      // variable
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);

      // bbs data
      int id = RequestUtils.getParam(request, "id", 0);
      List list = BBSDAO.getDiscuss(id);
      if ((list == null) || (list.size() == 0)) {
        response.sendRedirect(
            Globals.root(request)
                + "/bbs/index2.jsp?page="
                + StringUtils.exportString(request.getParameter("page")));
        return;
      }
      String defaultTitle = null;
      BBSBean bbs = null;

      pageContext.write(_jsp_string1, 0, _jsp_string1.length);

      // *********************************
      // head
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.include("/inc/head.jsp");
      pageContext.write(_jsp_string2, 0, _jsp_string2.length);

      // *********************************
      // top
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.include("/inc/logo_admin.jsp");
      pageContext.write(_jsp_string0, 0, _jsp_string0.length);

      // *********************************
      // content
      // *********************************

      pageContext.write(_jsp_string3, 0, _jsp_string3.length);
      if (_jsp_tag1 == null) {
        _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
        _jsp_tag1.setPageContext(pageContext);
        _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
      }

      _jsp_tag1.setKey("error.staritem.not.null");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string4, 0, _jsp_string4.length);
      _jsp_tag1.setKey("error.staritem.not.null");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string5, 0, _jsp_string5.length);
      _jsp_tag1.setKey("common.title.bbs");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string6, 0, _jsp_string6.length);
      if (((BBSBean) list.get(0)).getIsTop() == BBSBean.TRUE) {
        pageContext.write(_jsp_string7, 0, _jsp_string7.length);
        if (_jsp_tag2 == null) {
          _jsp_tag2 = new org.apache.struts.taglib.html.RewriteTag();
          _jsp_tag2.setPageContext(pageContext);
          _jsp_tag2.setParent((javax.servlet.jsp.tagext.Tag) null);
        }

        _jsp_tag2.setPage("/bbs.do");
        int _jspEval15 = _jsp_tag2.doStartTag();
        int _jsp_endTagVar16 = _jsp_tag2.doEndTag();
        if (_jsp_endTagVar16 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
        pageContext.write(_jsp_string8, 0, _jsp_string8.length);
        out.print((id));
        pageContext.write(_jsp_string9, 0, _jsp_string9.length);
        out.print((id));
        pageContext.write(_jsp_string10, 0, _jsp_string10.length);
        out.print((StringUtils.exportString(request.getParameter("page"))));
        pageContext.write(_jsp_string11, 0, _jsp_string11.length);
        if (_jsp_tag1 == null) {
          _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
          _jsp_tag1.setPageContext(pageContext);
          _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
        }

        _jsp_tag1.setKey("common.text.bbs.cancel.top");
        _jsp_tag1.doStartTag();
        pageContext.write(_jsp_string12, 0, _jsp_string12.length);
      } else {
        pageContext.write(_jsp_string13, 0, _jsp_string13.length);
        if (_jsp_tag2 == null) {
          _jsp_tag2 = new org.apache.struts.taglib.html.RewriteTag();
          _jsp_tag2.setPageContext(pageContext);
          _jsp_tag2.setParent((javax.servlet.jsp.tagext.Tag) null);
        }

        _jsp_tag2.setPage("/bbs.do");
        int _jspEval22 = _jsp_tag2.doStartTag();
        int _jsp_endTagVar23 = _jsp_tag2.doEndTag();
        if (_jsp_endTagVar23 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
        pageContext.write(_jsp_string8, 0, _jsp_string8.length);
        out.print((id));
        pageContext.write(_jsp_string9, 0, _jsp_string9.length);
        out.print((id));
        pageContext.write(_jsp_string10, 0, _jsp_string10.length);
        out.print((StringUtils.exportString(request.getParameter("page"))));
        pageContext.write(_jsp_string14, 0, _jsp_string14.length);
        if (_jsp_tag1 == null) {
          _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
          _jsp_tag1.setPageContext(pageContext);
          _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
        }

        _jsp_tag1.setKey("common.text.bbs.top.article");
        _jsp_tag1.doStartTag();
        pageContext.write(_jsp_string12, 0, _jsp_string12.length);
      }
      pageContext.write(_jsp_string15, 0, _jsp_string15.length);
      if (_jsp_tag2 == null) {
        _jsp_tag2 = new org.apache.struts.taglib.html.RewriteTag();
        _jsp_tag2.setPageContext(pageContext);
        _jsp_tag2.setParent((javax.servlet.jsp.tagext.Tag) null);
      }

      _jsp_tag2.setPage("/bbs.do");
      int _jspEval29 = _jsp_tag2.doStartTag();
      int _jsp_endTagVar30 = _jsp_tag2.doEndTag();
      if (_jsp_endTagVar30 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
      pageContext.write(_jsp_string16, 0, _jsp_string16.length);
      out.print((id));
      pageContext.write(_jsp_string17, 0, _jsp_string17.length);
      out.print((list.size()));
      pageContext.write(_jsp_string18, 0, _jsp_string18.length);
      out.print((StringUtils.exportString(request.getParameter("page"))));
      pageContext.write(_jsp_string19, 0, _jsp_string19.length);

      for (int i = 0; i < list.size(); i++) {
        bbs = (BBSBean) list.get(i);
        if (i == 0) {
          defaultTitle = "RE:" + bbs.getTitle();
        }

        pageContext.write(_jsp_string20, 0, _jsp_string20.length);
        out.print((i));
        pageContext.write(_jsp_string21, 0, _jsp_string21.length);
        out.print((i));
        pageContext.write(_jsp_string22, 0, _jsp_string22.length);
        out.print((bbs.getId()));
        pageContext.write(_jsp_string23, 0, _jsp_string23.length);
        out.print((bbs.getTitle()));
        pageContext.write(_jsp_string24, 0, _jsp_string24.length);
        if (i == 0) {
          if (_jsp_tag1 == null) {
            _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
            _jsp_tag1.setPageContext(pageContext);
            _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
          }

          _jsp_tag1.setKey("common.text.bbs.master");
          _jsp_tag1.doStartTag();
        } else {
          if (_jsp_tag3 == null) {
            _jsp_tag3 = new org.apache.struts.taglib.bean.MessageTag();
            _jsp_tag3.setPageContext(pageContext);
            _jsp_tag3.setParent((javax.servlet.jsp.tagext.Tag) null);
            _jsp_tag3.setKey("common.text.bbs.ceng");
          }

          _jsp_tag3.setArg0(String.valueOf(i));
          _jsp_tag3.doStartTag();
        }
        pageContext.write(_jsp_string25, 0, _jsp_string25.length);
        out.print((bbs.getContent().replaceAll("\r", "<br>")));
        pageContext.write(_jsp_string26, 0, _jsp_string26.length);
        if (i == 0) {
          if (_jsp_tag1 == null) {
            _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
            _jsp_tag1.setPageContext(pageContext);
            _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
          }

          _jsp_tag1.setKey("common.text.bbs.beginer");
          _jsp_tag1.doStartTag();
        } else {
          if (_jsp_tag1 == null) {
            _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
            _jsp_tag1.setPageContext(pageContext);
            _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
          }

          _jsp_tag1.setKey("common.text.bbs.replyer");
          _jsp_tag1.doStartTag();
        }
        pageContext.write(_jsp_string27, 0, _jsp_string27.length);
        out.print((bbs.getAuthorName()));
        pageContext.write(_jsp_string28, 0, _jsp_string28.length);
        if (_jsp_tag1 == null) {
          _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
          _jsp_tag1.setPageContext(pageContext);
          _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
        }

        _jsp_tag1.setKey("common.bbs.title.issue.time");
        _jsp_tag1.doStartTag();
        out.print((StringUtils.exportDate(bbs.getCreateTime(), "yyyy-MM-dd HH:mm")));
        pageContext.write(_jsp_string29, 0, _jsp_string29.length);
        _jsp_tag1.setKey("ins.confirm.delete");
        _jsp_tag1.doStartTag();
        pageContext.write(_jsp_string30, 0, _jsp_string30.length);
        _jsp_tag1.setKey("common.button.bbs.delete");
        _jsp_tag1.doStartTag();
        pageContext.write(_jsp_string31, 0, _jsp_string31.length);
      }
      pageContext.write(_jsp_string32, 0, _jsp_string32.length);
      if (_jsp_tag2 == null) {
        _jsp_tag2 = new org.apache.struts.taglib.html.RewriteTag();
        _jsp_tag2.setPageContext(pageContext);
        _jsp_tag2.setParent((javax.servlet.jsp.tagext.Tag) null);
      }

      _jsp_tag2.setPage("/bbs.do");
      int _jspEval54 = _jsp_tag2.doStartTag();
      int _jsp_endTagVar55 = _jsp_tag2.doEndTag();
      if (_jsp_endTagVar55 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
      pageContext.write(_jsp_string33, 0, _jsp_string33.length);
      out.print((id));
      pageContext.write(_jsp_string34, 0, _jsp_string34.length);
      out.print((id));
      pageContext.write(_jsp_string35, 0, _jsp_string35.length);
      out.print((StringUtils.exportString(request.getParameter("page"))));
      pageContext.write(_jsp_string36, 0, _jsp_string36.length);
      _jsp_tag2.setPage("/images/orange_arrow.gif");
      int _jspEval58 = _jsp_tag2.doStartTag();
      int _jsp_endTagVar59 = _jsp_tag2.doEndTag();
      if (_jsp_endTagVar59 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
      pageContext.write(_jsp_string37, 0, _jsp_string37.length);
      if (_jsp_tag1 == null) {
        _jsp_tag1 = new org.apache.struts.taglib.bean.MessageTag();
        _jsp_tag1.setPageContext(pageContext);
        _jsp_tag1.setParent((javax.servlet.jsp.tagext.Tag) null);
      }

      _jsp_tag1.setKey("common.text.bbs.reply");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string38, 0, _jsp_string38.length);
      _jsp_tag1.setKey("common.bbs.title.subject");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string39, 0, _jsp_string39.length);
      out.print((defaultTitle));
      pageContext.write(_jsp_string40, 0, _jsp_string40.length);
      _jsp_tag1.setKey("common.bbs.title.content");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string41, 0, _jsp_string41.length);
      _jsp_tag1.setKey("common.text.bbs.reply");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string42, 0, _jsp_string42.length);
      _jsp_tag2.setPage("/bbs/index2.jsp?page=");
      int _jspEval74 = _jsp_tag2.doStartTag();
      int _jsp_endTagVar75 = _jsp_tag2.doEndTag();
      if (_jsp_endTagVar75 == javax.servlet.jsp.tagext.Tag.SKIP_PAGE) return;
      out.print((StringUtils.exportString(request.getParameter("page"))));
      pageContext.write(_jsp_string43, 0, _jsp_string43.length);
      _jsp_tag1.setKey("common.button.back");
      _jsp_tag1.doStartTag();
      pageContext.write(_jsp_string44, 0, _jsp_string44.length);

      // *********************************
      // end content
      // *********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);

      // **********************************
      // footer
      // **********************************

      pageContext.write(_jsp_string0, 0, _jsp_string0.length);
      pageContext.include("/inc/footer.jsp");
      pageContext.write(_jsp_string45, 0, _jsp_string45.length);
    } catch (java.lang.Throwable _jsp_e) {
      pageContext.handlePageException(_jsp_e);
    } finally {
      if (_jsp_tag0 != null) _jsp_tag0.release();
      if (_jsp_tag1 != null) _jsp_tag1.release();
      if (_jsp_tag2 != null) _jsp_tag2.release();
      if (_jsp_tag3 != null) _jsp_tag3.release();
      JspFactory.getDefaultFactory().releasePageContext(pageContext);
    }
  }
  private void processRequestStatistics(
      HttpServletRequest request, HttpServletResponse response, String type)
      throws ServletException, IOException {
    String cancerStudyIds = request.getParameter(QueryBuilder.CANCER_STUDY_ID);

    try {
      boolean includeMut = "mut".equalsIgnoreCase(type);
      boolean includeCna = "cna".equalsIgnoreCase(type);

      Map<String, Map<String, Object>> data = new HashMap<String, Map<String, Object>>();
      // get list of cancer studies
      AccessControl accessControl = getaccessControl();
      List<CancerStudy> cancerStudies;
      if (cancerStudyIds == null || cancerStudyIds.isEmpty()) {
        cancerStudies = accessControl.getCancerStudies();
      } else {
        cancerStudies = new ArrayList<CancerStudy>();
        for (String studyId : cancerStudyIds.split("[ ,]+")) {
          CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyId);
          if (study != null && !accessControl.isAccessibleCancerStudy(studyId).isEmpty()) {
            cancerStudies.add(study);
          }
        }
      }
      for (CancerStudy cancerStudy : cancerStudies) {
        if (cancerStudy.getCancerStudyStableId().equalsIgnoreCase("all")) {
          continue;
        }
        Map<String, Object> row = new HashMap<String, Object>();
        data.put(cancerStudy.getCancerStudyStableId(), row);

        if (!includeMut && !includeMut) {
          row.put("name", cancerStudy.getName());
          String pmid = cancerStudy.getPmid();
          if (pmid != null) {
            row.put("pmid", pmid);
          }
          String citation = cancerStudy.getCitation();
          if (citation != null) {
            row.put("citation", citation);
          }
          row.put(
              "cases", DaoPatient.getPatientsByCancerStudyId(cancerStudy.getInternalId()).size());
        }

        if (includeMut) {
          GeneticProfile mutProfile = cancerStudy.getMutationProfile();
          if (mutProfile == null) {
            row.put("mut", 0);
          } else {
            int mutEvents = DaoMutation.countMutationEvents(mutProfile.getGeneticProfileId());
            int samplesWithMut =
                DaoSampleProfile.countSamplesInProfile(mutProfile.getGeneticProfileId());
            row.put("mut", 1.0 * mutEvents / samplesWithMut);
          }
        }

        if (includeCna) {
          GeneticProfile cnaProfile = cancerStudy.getCopyNumberAlterationProfile(false);
          if (cnaProfile == null) {
            row.put("cna", 0);
          } else {
            List<Integer> samples =
                DaoSampleProfile.getAllSampleIdsInProfile(cnaProfile.getGeneticProfileId());
            Map<Integer, Double> fracs =
                DaoCopyNumberSegment.getCopyNumberActeredFraction(
                    samples,
                    cnaProfile.getCancerStudyId(),
                    GlobalProperties.getPatientViewGenomicOverviewCnaCutoff()[0]);
            double aveFrac = 0;
            for (double frac : fracs.values()) {
              aveFrac += frac;
            }
            aveFrac /= samples.size();
            row.put("cna", aveFrac);
          }
        }
      }

      response.setContentType("application/json");

      PrintWriter out = response.getWriter();
      try {
        JSONValue.writeJSONString(data, out);
      } finally {
        out.close();
      }
    } catch (DaoException ex) {
      throw new ServletException(ex);
    } catch (ProtocolException ex) {
      throw new ServletException(ex);
    }
  }
示例#23
0
  protected void doPost(HttpServletRequest request, HttpServletResponse response)
      throws ServletException, IOException {
    try {
      JSONParser parser = new JSONParser();
      String originalRouteJsonString = request.getParameter("originalroutejsontext");
      JSONObject originalRouteJsonObject = (JSONObject) parser.parse(originalRouteJsonString);
      JSONObject routes = (JSONObject) ((JSONArray) originalRouteJsonObject.get("routes")).get(0);
      JSONArray legs = (JSONArray) routes.get("legs");
      JSONArray steps = (JSONArray) ((JSONObject) legs.get(0)).get("steps");

      String routeID = request.getParameter("routeid");
      // System.out.println("Route steps loaded in a JSONArray...size is " + steps.size());

      List<Double> stepLats = new ArrayList<Double>();
      List<Double> stepLngs = new ArrayList<Double>();

      for (int i = 0; i < steps.size(); i++) {
        JSONObject temp = (JSONObject) ((JSONObject) steps.get(i)).get("end_location");
        // System.out.println("Lat of end_location of step " + i + " " + temp.get("lat"));
        stepLats.add(Double.parseDouble(temp.get("lat").toString()));
        stepLngs.add(Double.parseDouble(temp.get("lng").toString()));
      }
      // System.out.println("All steps set with size " + stepLngs.size() + " and " +
      // stepLats.size());

      // System.out.println("Skipping route boxer...");
      // RouteBoxer routeBoxer = new RouteBoxer(stepLats, stepLngs,
      // Double.parseDouble(request.getParameter("radius")));

      // if(routeBoxer.getFlag())
      //  throw new RuntimeException("Could not create boxes for the route");

      // List<Double> boxLats = routeBoxer.getLats();
      // List<Double> boxLngs = routeBoxer.getLngs();

      // System.out.println("Calculated boxes with number of lats " + boxLats.size() + " and number
      // of lngs " + boxLngs.size());

      double r = Double.parseDouble(request.getParameter("radius").toString());
      int radius = r > RADIUS_TO_LOOK_FOR_PLACES ? RADIUS_TO_LOOK_FOR_PLACES : (int) r;

      String[] types = request.getParameter("keywords").split(",");
      System.out.println("Size of types is " + types.length);

      JSONObject finalPlacesJSONObject = new JSONObject();

      for (int j = 0; j < types.length; j++) {
        JSONArray jsonArrayForType = new JSONArray();

        for (int i = 0; i < stepLats.size(); i++) {
          JSONObject placesAroundLocationJSONObject =
              (JSONObject)
                  parser.parse(
                      GoogleMap.getPlacesAroundLocation(
                          stepLats.get(i), stepLngs.get(i), radius, types[j]));
          JSONArray placesAroundLocationJSONArray =
              (JSONArray) placesAroundLocationJSONObject.get("results");

          if (!placesAroundLocationJSONArray.isEmpty()) {
            jsonArrayForType.addAll(placesAroundLocationJSONArray);
          }
        }
        finalPlacesJSONObject.put(types[j], jsonArrayForType);
      }
      List<String> place_ids = new ArrayList<String>();

      finalPlacesJSONObject = removeDuplicatePlaces(finalPlacesJSONObject);
      finalPlacesJSONObject =
          filterPlacesRandomly(finalPlacesJSONObject, FINAL_PLACES_NUMBER_PER_REQUEST, place_ids);

      // System.out.println("MAGIC " + place_ids.toString());
      DatastoreService datastore = DatastoreServiceFactory.getDatastoreService();
      MemcacheService syncCache = MemcacheServiceFactory.getMemcacheService();

      // add places as a property of original route entity
      Entity originalRouteEntity =
          datastore.get(KeyFactory.createKey("Route", Long.parseLong(routeID)));
      Text placesJsonAsText = new Text(finalPlacesJSONObject.toJSONString());
      originalRouteEntity.setProperty("placesJSON", placesJsonAsText);
      datastore.put(originalRouteEntity);
      // System.out.println("SUCCESS written places to datastore");

      // add task for fetching place reviews to queue
      QueueFactory.getDefaultQueue()
          .add(
              TaskOptions.Builder.withUrl("/waypointsreview")
                  .param("places", place_ids.toString()));

      System.out.println("Task to get reviews added to queue");
      // We cache the route entity
      String cacheKey = "route-" + routeID;
      syncCache.put(cacheKey, originalRouteEntity);
    } catch (Exception e) {
      System.out.println("ERROR " + e.getMessage());
      e.printStackTrace();
    }
  }
示例#24
0
  public void generateFileChunks(JspWriter out, HttpServletRequest req, Configuration conf)
      throws IOException, InterruptedException {
    long startOffset = 0;
    int datanodePort = 0;
    int chunkSizeToView = 0;

    String namenodeInfoPortStr = req.getParameter("namenodeInfoPort");
    int namenodeInfoPort = -1;
    if (namenodeInfoPortStr != null) namenodeInfoPort = Integer.parseInt(namenodeInfoPortStr);

    String filename = HtmlQuoting.unquoteHtmlChars(req.getParameter("filename"));
    if (filename == null) {
      out.print("Invalid input (filename absent)");
      return;
    }

    String blockIdStr = null;
    long blockId = 0;
    blockIdStr = req.getParameter("blockId");
    if (blockIdStr == null) {
      out.print("Invalid input (blockId absent)");
      return;
    }
    blockId = Long.parseLong(blockIdStr);

    String tokenString = req.getParameter(JspHelper.DELEGATION_PARAMETER_NAME);
    UserGroupInformation ugi = JspHelper.getUGI(req, conf);
    final DFSClient dfs = JspHelper.getDFSClient(ugi, jspHelper.nameNodeAddr, conf);

    Token<BlockTokenIdentifier> accessToken = BlockTokenSecretManager.DUMMY_TOKEN;
    if (conf.getBoolean(DFSConfigKeys.DFS_BLOCK_ACCESS_TOKEN_ENABLE_KEY, false)) {
      List<LocatedBlock> blks =
          dfs.namenode.getBlockLocations(filename, 0, Long.MAX_VALUE).getLocatedBlocks();
      if (blks == null || blks.size() == 0) {
        out.print("Can't locate file blocks");
        dfs.close();
        return;
      }
      for (int i = 0; i < blks.size(); i++) {
        if (blks.get(i).getBlock().getBlockId() == blockId) {
          accessToken = blks.get(i).getBlockToken();
          break;
        }
      }
    }

    String blockGenStamp = null;
    long genStamp = 0;
    blockGenStamp = req.getParameter("genstamp");
    if (blockGenStamp == null) {
      out.print("Invalid input (genstamp absent)");
      return;
    }
    genStamp = Long.parseLong(blockGenStamp);

    String blockSizeStr;
    long blockSize = 0;
    blockSizeStr = req.getParameter("blockSize");
    if (blockSizeStr == null) {
      out.print("Invalid input (blockSize absent)");
      return;
    }
    blockSize = Long.parseLong(blockSizeStr);

    String chunkSizeToViewStr = req.getParameter("chunkSizeToView");
    if (chunkSizeToViewStr != null && Integer.parseInt(chunkSizeToViewStr) > 0)
      chunkSizeToView = Integer.parseInt(chunkSizeToViewStr);
    else chunkSizeToView = JspHelper.getDefaultChunkSize(conf);

    String startOffsetStr = req.getParameter("startOffset");
    if (startOffsetStr == null || Long.parseLong(startOffsetStr) < 0) startOffset = 0;
    else startOffset = Long.parseLong(startOffsetStr);

    String datanodePortStr = req.getParameter("datanodePort");
    if (datanodePortStr == null) {
      out.print("Invalid input (datanodePort absent)");
      return;
    }
    datanodePort = Integer.parseInt(datanodePortStr);
    out.print("<h3>File: ");
    JspHelper.printPathWithLinks(
        HtmlQuoting.quoteHtmlChars(filename), out, namenodeInfoPort, tokenString);
    out.print("</h3><hr>");
    String parent = new File(filename).getParent();
    JspHelper.printGotoForm(out, namenodeInfoPort, tokenString, HtmlQuoting.quoteHtmlChars(parent));
    out.print("<hr>");
    out.print(
        "<a href=\"http://"
            + req.getServerName()
            + ":"
            + req.getServerPort()
            + "/browseDirectory.jsp?dir="
            + URLEncoder.encode(parent, "UTF-8")
            + "&namenodeInfoPort="
            + namenodeInfoPort
            + "\"><i>Go back to dir listing</i></a><br>");
    out.print("<a href=\"#viewOptions\">Advanced view/download options</a><br>");
    out.print("<hr>");

    // Determine the prev & next blocks
    long nextStartOffset = 0;
    long nextBlockSize = 0;
    String nextBlockIdStr = null;
    String nextGenStamp = null;
    String nextHost = req.getServerName();
    int nextPort = req.getServerPort();
    int nextDatanodePort = datanodePort;
    // determine data for the next link
    if (startOffset + chunkSizeToView >= blockSize) {
      // we have to go to the next block from this point onwards
      List<LocatedBlock> blocks =
          dfs.namenode.getBlockLocations(filename, 0, Long.MAX_VALUE).getLocatedBlocks();
      for (int i = 0; i < blocks.size(); i++) {
        if (blocks.get(i).getBlock().getBlockId() == blockId) {
          if (i != blocks.size() - 1) {
            LocatedBlock nextBlock = blocks.get(i + 1);
            nextBlockIdStr = Long.toString(nextBlock.getBlock().getBlockId());
            nextGenStamp = Long.toString(nextBlock.getBlock().getGenerationStamp());
            nextStartOffset = 0;
            nextBlockSize = nextBlock.getBlock().getNumBytes();
            DatanodeInfo d = jspHelper.bestNode(nextBlock);
            String datanodeAddr = d.getName();
            nextDatanodePort =
                Integer.parseInt(
                    datanodeAddr.substring(datanodeAddr.indexOf(':') + 1, datanodeAddr.length()));
            nextHost = InetAddress.getByName(d.getHost()).getCanonicalHostName();
            nextPort = d.getInfoPort();
          }
        }
      }
    } else {
      // we are in the same block
      nextBlockIdStr = blockIdStr;
      nextStartOffset = startOffset + chunkSizeToView;
      nextBlockSize = blockSize;
      nextGenStamp = blockGenStamp;
    }
    String nextUrl = null;
    if (nextBlockIdStr != null) {
      nextUrl =
          "http://"
              + nextHost
              + ":"
              + nextPort
              + "/browseBlock.jsp?blockId="
              + nextBlockIdStr
              + "&blockSize="
              + nextBlockSize
              + "&startOffset="
              + nextStartOffset
              + "&genstamp="
              + nextGenStamp
              + "&filename="
              + URLEncoder.encode(filename, "UTF-8")
              + "&chunkSizeToView="
              + chunkSizeToView
              + "&datanodePort="
              + nextDatanodePort
              + "&namenodeInfoPort="
              + namenodeInfoPort
              + JspHelper.getDelegationTokenUrlParam(tokenString);
      out.print("<a href=\"" + nextUrl + "\">View Next chunk</a>&nbsp;&nbsp;");
    }
    // determine data for the prev link
    String prevBlockIdStr = null;
    String prevGenStamp = null;
    long prevStartOffset = 0;
    long prevBlockSize = 0;
    String prevHost = req.getServerName();
    int prevPort = req.getServerPort();
    int prevDatanodePort = datanodePort;
    if (startOffset == 0) {
      List<LocatedBlock> blocks =
          dfs.namenode.getBlockLocations(filename, 0, Long.MAX_VALUE).getLocatedBlocks();
      for (int i = 0; i < blocks.size(); i++) {
        if (blocks.get(i).getBlock().getBlockId() == blockId) {
          if (i != 0) {
            LocatedBlock prevBlock = blocks.get(i - 1);
            prevBlockIdStr = Long.toString(prevBlock.getBlock().getBlockId());
            prevGenStamp = Long.toString(prevBlock.getBlock().getGenerationStamp());
            prevStartOffset = prevBlock.getBlock().getNumBytes() - chunkSizeToView;
            if (prevStartOffset < 0) prevStartOffset = 0;
            prevBlockSize = prevBlock.getBlock().getNumBytes();
            DatanodeInfo d = jspHelper.bestNode(prevBlock);
            String datanodeAddr = d.getName();
            prevDatanodePort =
                Integer.parseInt(
                    datanodeAddr.substring(datanodeAddr.indexOf(':') + 1, datanodeAddr.length()));
            prevHost = InetAddress.getByName(d.getHost()).getCanonicalHostName();
            prevPort = d.getInfoPort();
          }
        }
      }
    } else {
      // we are in the same block
      prevBlockIdStr = blockIdStr;
      prevStartOffset = startOffset - chunkSizeToView;
      if (prevStartOffset < 0) prevStartOffset = 0;
      prevBlockSize = blockSize;
      prevGenStamp = blockGenStamp;
    }

    String prevUrl = null;
    if (prevBlockIdStr != null) {
      prevUrl =
          "http://"
              + prevHost
              + ":"
              + prevPort
              + "/browseBlock.jsp?blockId="
              + prevBlockIdStr
              + "&blockSize="
              + prevBlockSize
              + "&startOffset="
              + prevStartOffset
              + "&filename="
              + URLEncoder.encode(filename, "UTF-8")
              + "&chunkSizeToView="
              + chunkSizeToView
              + "&genstamp="
              + prevGenStamp
              + "&datanodePort="
              + prevDatanodePort
              + "&namenodeInfoPort="
              + namenodeInfoPort
              + JspHelper.getDelegationTokenUrlParam(tokenString);
      out.print("<a href=\"" + prevUrl + "\">View Prev chunk</a>&nbsp;&nbsp;");
    }
    out.print("<hr>");
    out.print("<textarea cols=\"100\" rows=\"25\" wrap=\"virtual\" style=\"width:100%\" READONLY>");
    try {
      jspHelper.streamBlockInAscii(
          new InetSocketAddress(req.getServerName(), datanodePort),
          blockId,
          accessToken,
          genStamp,
          blockSize,
          startOffset,
          chunkSizeToView,
          out,
          conf);
    } catch (Exception e) {
      out.print(e);
    }
    out.print("</textarea>");
    dfs.close();
  }
示例#25
0
  public void generateFileDetails(JspWriter out, HttpServletRequest req, Configuration conf)
      throws IOException, InterruptedException {

    int chunkSizeToView = 0;
    long startOffset = 0;
    int datanodePort;

    String blockIdStr = null;
    long currBlockId = 0;
    blockIdStr = req.getParameter("blockId");
    if (blockIdStr == null) {
      out.print("Invalid input (blockId absent)");
      return;
    }
    currBlockId = Long.parseLong(blockIdStr);

    String datanodePortStr = req.getParameter("datanodePort");
    if (datanodePortStr == null) {
      out.print("Invalid input (datanodePort absent)");
      return;
    }
    datanodePort = Integer.parseInt(datanodePortStr);

    String namenodeInfoPortStr = req.getParameter("namenodeInfoPort");
    int namenodeInfoPort = -1;
    if (namenodeInfoPortStr != null) namenodeInfoPort = Integer.parseInt(namenodeInfoPortStr);

    String chunkSizeToViewStr = req.getParameter("chunkSizeToView");
    if (chunkSizeToViewStr != null && Integer.parseInt(chunkSizeToViewStr) > 0) {
      chunkSizeToView = Integer.parseInt(chunkSizeToViewStr);
    } else {
      chunkSizeToView = JspHelper.getDefaultChunkSize(conf);
    }

    String startOffsetStr = req.getParameter("startOffset");
    if (startOffsetStr == null || Long.parseLong(startOffsetStr) < 0) startOffset = 0;
    else startOffset = Long.parseLong(startOffsetStr);

    String filename = HtmlQuoting.unquoteHtmlChars(req.getParameter("filename"));
    if (filename == null || filename.length() == 0) {
      out.print("Invalid input");
      return;
    }

    String blockSizeStr = req.getParameter("blockSize");
    long blockSize = 0;
    if (blockSizeStr == null || blockSizeStr.length() == 0) {
      out.print("Invalid input");
      return;
    }
    blockSize = Long.parseLong(blockSizeStr);

    String tokenString = req.getParameter(JspHelper.DELEGATION_PARAMETER_NAME);
    UserGroupInformation ugi = JspHelper.getUGI(req, conf);
    DFSClient dfs = JspHelper.getDFSClient(ugi, jspHelper.nameNodeAddr, conf);
    List<LocatedBlock> blocks =
        dfs.namenode.getBlockLocations(filename, 0, Long.MAX_VALUE).getLocatedBlocks();
    // Add the various links for looking at the file contents
    // URL for downloading the full file
    String downloadUrl =
        "http://"
            + req.getServerName()
            + ":"
            + +req.getServerPort()
            + "/streamFile"
            + URLEncoder.encode(filename, "UTF-8")
            + "?"
            + JspHelper.DELEGATION_PARAMETER_NAME
            + "="
            + tokenString;
    out.print("<a name=\"viewOptions\"></a>");
    out.print("<a href=\"" + downloadUrl + "\">Download this file</a><br>");

    DatanodeInfo chosenNode;
    // URL for TAIL
    LocatedBlock lastBlk = blocks.get(blocks.size() - 1);
    long blockId = lastBlk.getBlock().getBlockId();
    try {
      chosenNode = jspHelper.bestNode(lastBlk);
    } catch (IOException e) {
      out.print(e.toString());
      dfs.close();
      return;
    }
    String fqdn = InetAddress.getByName(chosenNode.getHost()).getCanonicalHostName();
    String tailUrl =
        "http://"
            + fqdn
            + ":"
            + chosenNode.getInfoPort()
            + "/tail.jsp?filename="
            + URLEncoder.encode(filename, "UTF-8")
            + "&namenodeInfoPort="
            + namenodeInfoPort
            + "&chunkSizeToView="
            + chunkSizeToView
            + "&referrer="
            + URLEncoder.encode(req.getRequestURL() + "?" + req.getQueryString(), "UTF-8")
            + JspHelper.getDelegationTokenUrlParam(tokenString);
    out.print("<a href=\"" + tailUrl + "\">Tail this file</a><br>");

    out.print("<form action=\"/browseBlock.jsp\" method=GET>");
    out.print("<b>Chunk size to view (in bytes, up to file's DFS block size): </b>");
    out.print("<input type=\"hidden\" name=\"blockId\" value=\"" + currBlockId + "\">");
    out.print("<input type=\"hidden\" name=\"blockSize\" value=\"" + blockSize + "\">");
    out.print("<input type=\"hidden\" name=\"startOffset\" value=\"" + startOffset + "\">");
    out.print("<input type=\"hidden\" name=\"filename\" value=\"" + filename + "\">");
    out.print("<input type=\"hidden\" name=\"datanodePort\" value=\"" + datanodePort + "\">");
    out.print(
        "<input type=\"hidden\" name=\"namenodeInfoPort\" value=\"" + namenodeInfoPort + "\">");
    out.print(
        "<input type=\"text\" name=\"chunkSizeToView\" value="
            + chunkSizeToView
            + " size=10 maxlength=10>");
    out.print("&nbsp;&nbsp;<input type=\"submit\" name=\"submit\" value=\"Refresh\">");
    out.print("</form>");
    out.print("<hr>");
    out.print("<a name=\"blockDetails\"></a>");
    out.print("<B>Total number of blocks: " + blocks.size() + "</B><br>");
    // generate a table and dump the info
    out.println("\n<table>");
    for (LocatedBlock cur : blocks) {
      out.print("<tr>");
      blockId = cur.getBlock().getBlockId();
      blockSize = cur.getBlock().getNumBytes();
      String blk = "blk_" + Long.toString(blockId);
      out.print("<td>" + Long.toString(blockId) + ":</td>");
      DatanodeInfo[] locs = cur.getLocations();
      for (int j = 0; j < locs.length; j++) {
        String datanodeAddr = locs[j].getName();
        datanodePort =
            Integer.parseInt(
                datanodeAddr.substring(datanodeAddr.indexOf(':') + 1, datanodeAddr.length()));
        fqdn = InetAddress.getByName(locs[j].getHost()).getCanonicalHostName();
        String blockUrl =
            "http://"
                + fqdn
                + ":"
                + locs[j].getInfoPort()
                + "/browseBlock.jsp?blockId="
                + Long.toString(blockId)
                + "&blockSize="
                + blockSize
                + "&filename="
                + URLEncoder.encode(filename, "UTF-8")
                + "&datanodePort="
                + datanodePort
                + "&genstamp="
                + cur.getBlock().getGenerationStamp()
                + "&namenodeInfoPort="
                + namenodeInfoPort
                + "&chunkSizeToView="
                + chunkSizeToView;
        out.print(
            "<td>&nbsp</td>" + "<td><a href=\"" + blockUrl + "\">" + datanodeAddr + "</a></td>");
      }
      out.println("</tr>");
    }
    out.println("</table>");
    out.print("<hr>");
    String namenodeHost = jspHelper.nameNodeAddr.getHostName();
    out.print(
        "<br><a href=\"http://"
            + InetAddress.getByName(namenodeHost).getCanonicalHostName()
            + ":"
            + namenodeInfoPort
            + "/dfshealth.jsp\">Go back to DFS home</a>");
    dfs.close();
  }
示例#26
0
  private void dnaCommand(HttpServletRequest req, DazzleResponse resp, DazzleDataSource dds)
      throws IOException, DataSourceException, ServletException, DazzleException {

    DazzleReferenceSource drs = (DazzleReferenceSource) dds;

    List segments = DazzleTools.getSegments(dds, req, resp);
    if (segments.size() == 0) {
      throw new DazzleException(
          DASStatus.STATUS_BAD_COMMAND_ARGUMENTS, "No segments specified for dna command");
    }

    // Fetch and validate the requests.

    Map segmentResults = new HashMap();
    for (Iterator i = segments.iterator(); i.hasNext(); ) {
      Segment seg = (Segment) i.next();

      try {
        Sequence seq = drs.getSequence(seg.getReference());
        if (seq.getAlphabet() != DNATools.getDNA()) {
          throw new DazzleException(
              DASStatus.STATUS_SERVER_ERROR,
              "Sequence " + seg.toString() + " is not in the DNA alphabet");
        }
        if (seg.isBounded()) {
          if (seg.getMin() < 1 || seg.getMax() > seq.length()) {
            throw new DazzleException(
                DASStatus.STATUS_BAD_COORDS,
                "Segment " + seg.toString() + " doesn't fit sequence of length " + seq.length());
          }
        }
        segmentResults.put(seg, seq);
      } catch (NoSuchElementException ex) {
        throw new DazzleException(DASStatus.STATUS_BAD_REFERENCE, ex);
      } catch (DataSourceException ex) {
        throw new DazzleException(DASStatus.STATUS_SERVER_ERROR, ex);
      }
    }

    //
    // Looks okay -- generate the response document
    //

    XMLWriter xw = resp.startDasXML("DASDNA", "dasdna.dtd");

    try {
      xw.openTag("DASDNA");
      for (Iterator i = segmentResults.entrySet().iterator(); i.hasNext(); ) {
        Map.Entry me = (Map.Entry) i.next();
        Segment seg = (Segment) me.getKey();
        Sequence seq = (Sequence) me.getValue();

        xw.openTag("SEQUENCE");
        xw.attribute("id", seg.getReference());
        xw.attribute("version", drs.getLandmarkVersion(seg.getReference()));
        if (seg.isBounded()) {
          xw.attribute("start", "" + seg.getStart());
          xw.attribute("stop", "" + seg.getStop());
        } else {
          xw.attribute("start", "" + 1);
          xw.attribute("stop", "" + seq.length());
        }

        SymbolList syms = seq;
        if (seg.isBounded()) {
          syms = syms.subList(seg.getMin(), seg.getMax());
        }
        if (seg.isInverted()) {
          syms = DNATools.reverseComplement(syms);
        }

        xw.openTag("DNA");
        xw.attribute("length", "" + syms.length());

        for (int pos = 1; pos <= syms.length(); pos += 60) {
          int maxPos = Math.min(syms.length(), pos + 59);
          xw.println(syms.subStr(pos, maxPos));
        }

        xw.closeTag("DNA");
        xw.closeTag("SEQUENCE");
      }
      xw.closeTag("DASDNA");
      xw.close();
    } catch (Exception ex) {
      throw new DazzleException(ex, "Error writing DNA document");
    }
  }
示例#27
0
  public void generateFileChunks(JspWriter out, HttpServletRequest req) throws IOException {
    long startOffset = 0;

    int chunkSizeToView = 0;

    String referrer = req.getParameter("referrer");
    boolean noLink = false;
    if (referrer == null) {
      noLink = true;
    }

    String filename = req.getParameter("filename");
    if (filename == null) {
      out.print("Invalid input (file name absent)");
      return;
    }

    String namenodeInfoPortStr = req.getParameter("namenodeInfoPort");
    int namenodeInfoPort = -1;
    if (namenodeInfoPortStr != null) namenodeInfoPort = Integer.parseInt(namenodeInfoPortStr);

    String chunkSizeToViewStr = req.getParameter("chunkSizeToView");
    if (chunkSizeToViewStr != null && Integer.parseInt(chunkSizeToViewStr) > 0)
      chunkSizeToView = Integer.parseInt(chunkSizeToViewStr);
    else chunkSizeToView = jspHelper.defaultChunkSizeToView;

    if (!noLink) {
      out.print("<h3>Tail of File: ");
      JspHelper.printPathWithLinks(filename, out, namenodeInfoPort);
      out.print("</h3><hr>");
      out.print("<a href=\"" + referrer + "\">Go Back to File View</a><hr>");
    } else {
      out.print("<h3>" + filename + "</h3>");
    }
    out.print("<b>Chunk size to view (in bytes, up to file's DFS block size): </b>");
    out.print(
        "<input type=\"text\" name=\"chunkSizeToView\" value="
            + chunkSizeToView
            + " size=10 maxlength=10>");
    out.print("&nbsp;&nbsp;<input type=\"submit\" name=\"submit\" value=\"Refresh\"><hr>");
    out.print("<input type=\"hidden\" name=\"filename\" value=\"" + filename + "\">");
    out.print(
        "<input type=\"hidden\" name=\"namenodeInfoPort\" value=\"" + namenodeInfoPort + "\">");
    if (!noLink) out.print("<input type=\"hidden\" name=\"referrer\" value=\"" + referrer + "\">");

    // fetch the block from the datanode that has the last block for this file
    DFSClient dfs = new DFSClient(jspHelper.nameNodeAddr, jspHelper.conf);
    List<LocatedBlock> blocks =
        dfs.namenode.getBlockLocations(filename, 0, Long.MAX_VALUE).getLocatedBlocks();
    if (blocks == null || blocks.size() == 0) {
      out.print("No datanodes contain blocks of file " + filename);
      dfs.close();
      return;
    }
    LocatedBlock lastBlk = blocks.get(blocks.size() - 1);
    long blockSize = lastBlk.getBlock().getNumBytes();
    long blockId = lastBlk.getBlock().getBlockId();
    long genStamp = lastBlk.getBlock().getGenerationStamp();
    DatanodeInfo chosenNode;
    try {
      chosenNode = jspHelper.bestNode(lastBlk);
    } catch (IOException e) {
      out.print(e.toString());
      dfs.close();
      return;
    }
    InetSocketAddress addr = NetUtils.createSocketAddr(chosenNode.getName());
    // view the last chunkSizeToView bytes while Tailing
    if (blockSize >= chunkSizeToView) startOffset = blockSize - chunkSizeToView;
    else startOffset = 0;

    out.print("<textarea cols=\"100\" rows=\"25\" wrap=\"virtual\" style=\"width:100%\" READONLY>");
    jspHelper.streamBlockInAscii(
        addr, blockId, genStamp, blockSize, startOffset, chunkSizeToView, out);
    out.print("</textarea>");
    dfs.close();
  }
示例#28
0
  private void datasetInfoHtml(
      RadarType radarType, String pathInfo, PrintWriter pw, HttpServletResponse res)
      throws IOException {
    pathInfo = pathInfo.replace("/dataset.html", "");
    pathInfo = pathInfo.replace("/catalog.html", "");
    Element root = new Element("RadarNexrad");
    Document doc = new Document(root);

    if (pathInfo.startsWith("/")) pathInfo = pathInfo.substring(1);
    for (int i = 0; i < datasets.size(); i++) {
      InvDatasetScan ds = (InvDatasetScan) datasets.get(i);
      if (!(pathInfo.equals(ds.getPath()))) {
        continue;
      }

      // at this point a valid dataset
      // fix the location
      root.setAttribute("location", "/thredds/radarServer/" + ds.getPath());

      // spatial range
      ThreddsMetadata.GeospatialCoverage gc = ds.getGeospatialCoverage();
      LatLonRect bb = new LatLonRect();
      gc.setBoundingBox(bb);
      String north = Double.toString(gc.getLatNorth());
      String south = Double.toString(gc.getLatSouth());
      String east = Double.toString(gc.getLonEast());
      String west = Double.toString(gc.getLonWest());

      Element LatLonBox = new Element("LatLonBox");
      LatLonBox.addContent(new Element("north").addContent(north));
      LatLonBox.addContent(new Element("south").addContent(south));
      LatLonBox.addContent(new Element("east").addContent(east));
      LatLonBox.addContent(new Element("west").addContent(west));
      root.addContent(LatLonBox);

      // get the time range
      Element timeSpan = new Element("TimeSpan");
      CalendarDateRange dr = ds.getCalendarDateCoverage();
      timeSpan.addContent(new Element("begin").addContent(dr.getStart().toString()));
      timeSpan.addContent(new Element("end").addContent(dr.getEnd().toString()));
      root.addContent(timeSpan);

      ThreddsMetadata.Variables cvs = (ThreddsMetadata.Variables) ds.getVariables().get(0);
      List vl = cvs.getVariableList();

      for (int j = 0; j < vl.size(); j++) {
        ThreddsMetadata.Variable v = (ThreddsMetadata.Variable) vl.get(j);
        Element variable = new Element("variable");
        variable.setAttribute("name", v.getName());
        root.addContent(variable);
      }

      // add pointer to the station list XML
      /*
      Element stnList = new Element("stationList");
      stnList.setAttribute("title", "Available Stations", XMLEntityResolver.xlinkNS);
      stnList.setAttribute("href", "/thredds/radarServer/"+ pathInfo +"/stations.xml",
          XMLEntityResolver.xlinkNS);
      root.addContent(stnList);
      */
      // String[] stations = rns.stationsDS( dataLocation.get( ds.getPath() ));
      // rns.printStations( stations );

      // add accept list
      Element a = new Element("AcceptList");
      a.addContent(new Element("accept").addContent("xml"));
      a.addContent(new Element("accept").addContent("html"));
      root.addContent(a);
    }
    ServerMethods sm = new ServerMethods(log);
    InputStream xslt = sm.getInputStream(contentPath + getPath() + "radar.xsl", RadarServer.class);

    try {
      // what's wrong here xslt = getXSLT( "radar.xsl" );
      XSLTransformer transformer = new XSLTransformer(xslt);
      Document html = transformer.transform(doc);
      XMLOutputter fmt = new XMLOutputter(Format.getPrettyFormat());
      String infoString = fmt.outputString(html);
      res.setContentType("text/html; charset=iso-8859-1");
      pw = res.getWriter();
      pw.println(infoString);
      pw.flush();

    } catch (Exception e) {
      log.error("radarServer reading " + contentPath + getPath() + "radar.xsl");
      log.error("radarServer XSLTransformer problem for web form ", e);
    } finally {
      if (xslt != null) {
        try {
          xslt.close();
        } catch (IOException e) {
          log.error("radarServer radar.xsl: error closing" + contentPath + getPath() + "radar.xsl");
        }
      }
    }
    return;
  }
示例#29
0
  public boolean handleSAML11UnsolicitedResponse(
      HttpServletRequest request, HttpServletResponse response) throws IOException {
    String samlResponse = request.getParameter(GeneralConstants.SAML_RESPONSE_KEY);

    Principal principal = request.getUserPrincipal();

    // If we have already authenticated the user and there is no request from IDP or logout from
    // user
    if (principal != null) {
      return true;
    }

    HttpSession session = request.getSession(true);

    // See if we got a response from IDP
    if (isNotNull(samlResponse)) {
      boolean isValid = false;
      try {
        isValid = validate(request);
      } catch (Exception e) {
        logger.samlSPHandleRequestError(e);
        throw new IOException();
      }
      if (!isValid) {
        throw new IOException(ErrorCodes.VALIDATION_CHECK_FAILED);
      }

      try {
        InputStream base64DecodedResponse = null;

        if ("GET".equalsIgnoreCase(request.getMethod())) {
          base64DecodedResponse = RedirectBindingUtil.base64DeflateDecode(samlResponse);
        } else {
          base64DecodedResponse = PostBindingUtil.base64DecodeAsStream(samlResponse);
        }

        SAMLParser parser = new SAMLParser();
        SAML11ResponseType saml11Response =
            (SAML11ResponseType) parser.parse(base64DecodedResponse);

        List<SAML11AssertionType> assertions = saml11Response.get();
        if (assertions.size() > 1) {
          logger.trace("More than one assertion from IDP. Considering the first one.");
        }
        String username = null;
        List<String> roles = new ArrayList<String>();
        SAML11AssertionType assertion = assertions.get(0);
        if (assertion != null) {
          // Get the subject
          List<SAML11StatementAbstractType> statements = assertion.getStatements();
          for (SAML11StatementAbstractType statement : statements) {
            if (statement instanceof SAML11AuthenticationStatementType) {
              SAML11AuthenticationStatementType subStat =
                  (SAML11AuthenticationStatementType) statement;
              SAML11SubjectType subject = subStat.getSubject();
              username = subject.getChoice().getNameID().getValue();
            }
          }
          roles = AssertionUtil.getRoles(assertion, null);
        }

        return true;
      } catch (Exception e) {
        logger.samlSPHandleRequestError(e);
      }
    }

    return false;
  }
  public void doPost(HttpServletRequest request, HttpServletResponse response)
      throws ServletException, IOException {

    // set the response

    Shepherd myShepherd = new Shepherd();

    Vector rEncounters = new Vector();

    // setup data dir
    String rootWebappPath = getServletContext().getRealPath("/");
    File webappsDir = new File(rootWebappPath).getParentFile();
    File shepherdDataDir = new File(webappsDir, CommonConfiguration.getDataDirectoryName());
    // if(!shepherdDataDir.exists()){shepherdDataDir.mkdir();}
    File encountersDir = new File(shepherdDataDir.getAbsolutePath() + "/encounters");
    // if(!encountersDir.exists()){encountersDir.mkdir();}

    // set up the files
    String gisFilename = "geneGIS_export_" + request.getRemoteUser() + ".csv";
    File gisFile = new File(encountersDir.getAbsolutePath() + "/" + gisFilename);

    myShepherd.beginDBTransaction();

    try {

      // set up the output stream
      FileOutputStream fos = new FileOutputStream(gisFile);
      OutputStreamWriter outp = new OutputStreamWriter(fos);

      try {

        EncounterQueryResult queryResult =
            EncounterQueryProcessor.processQuery(
                myShepherd, request, "year descending, month descending, day descending");
        rEncounters = queryResult.getResult();

        int numMatchingEncounters = rEncounters.size();

        // build the CSV file header
        StringBuffer locusString = new StringBuffer("");
        int numLoci = 2; // most covered species will be loci
        try {
          numLoci = (new Integer(CommonConfiguration.getProperty("numLoci"))).intValue();
        } catch (Exception e) {
          System.out.println("numPloids configuration value did not resolve to an integer.");
          e.printStackTrace();
        }

        for (int j = 0; j < numLoci; j++) {
          locusString.append(",Locus" + (j + 1) + " A1,Locus" + (j + 1) + " A2");
        }
        // out.println("<html><body>");
        // out.println("Individual ID,Other ID 1,Date,Time,Latitude,Longitude,Area,Sub
        // Area,Sex,Haplotype"+locusString.toString());

        outp.write(
            "Individual ID,Other ID 1,Date,Time,Latitude,Longitude,Area,Sub Area,Sex,Haplotype"
                + locusString.toString()
                + "\n");

        for (int i = 0; i < numMatchingEncounters; i++) {

          Encounter enc = (Encounter) rEncounters.get(i);
          String assembledString = "";
          if (enc.getIndividualID() != null) {
            assembledString += enc.getIndividualID();
          }
          if (enc.getAlternateID() != null) {
            assembledString += "," + enc.getAlternateID();
          } else {
            assembledString += ",";
          }

          String dateString = ",";
          if (enc.getYear() > 0) {
            dateString += enc.getYear();
            if (enc.getMonth() > 0) {
              dateString += ("-" + enc.getMonth());
              if (enc.getDay() > 0) {
                dateString += ("-" + enc.getDay());
              }
            }
          }
          assembledString += dateString;

          String timeString = ",";
          if (enc.getHour() > -1) {
            timeString += enc.getHour() + ":" + enc.getMinutes();
          }
          assembledString += timeString;

          if ((enc.getDecimalLatitude() != null) && (enc.getDecimalLongitude() != null)) {
            assembledString += "," + enc.getDecimalLatitude();
            assembledString += "," + enc.getDecimalLongitude();
          } else {
            assembledString += ",,";
          }

          assembledString += "," + enc.getVerbatimLocality();
          assembledString += "," + enc.getLocationID();
          assembledString += "," + enc.getSex();

          // find and print the haplotype
          String haplotypeString = ",";
          if (enc.getHaplotype() != null) {
            haplotypeString += enc.getHaplotype();
          }

          // find and print the ms markers
          String msMarkerString = "";
          List<TissueSample> samples = enc.getTissueSamples();
          int numSamples = samples.size();
          boolean foundMsMarkers = false;
          for (int k = 0; k < numSamples; k++) {
            if (!foundMsMarkers) {
              TissueSample t = samples.get(k);
              List<GeneticAnalysis> analyses = t.getGeneticAnalyses();
              int aSize = analyses.size();
              for (int l = 0; l < aSize; l++) {
                GeneticAnalysis ga = analyses.get(l);
                if (ga.getAnalysisType().equals("MicrosatelliteMarkers")) {
                  foundMsMarkers = true;
                  MicrosatelliteMarkersAnalysis ga2 = (MicrosatelliteMarkersAnalysis) ga;
                  List<Locus> loci = ga2.getLoci();
                  int localLoci = loci.size();
                  for (int m = 0; m < localLoci; m++) {
                    Locus locus = loci.get(m);
                    if (locus.getAllele0() != null) {
                      msMarkerString += "," + locus.getAllele0();
                    } else {
                      msMarkerString += ",";
                    }
                    if (locus.getAllele1() != null) {
                      msMarkerString += "," + locus.getAllele1();
                    } else {
                      msMarkerString += ",";
                    }
                  }
                }
              }
            }
          }

          // out.println("<p>"+assembledString+haplotypeString+msMarkerString+"</p>");
          outp.write(assembledString + haplotypeString + msMarkerString + "\n");
        }
        outp.close();
        outp = null;

        // now write out the file
        response.setContentType("text/csv");
        response.setHeader("Content-Disposition", "attachment;filename=" + gisFilename);
        ServletContext ctx = getServletContext();
        // InputStream is = ctx.getResourceAsStream("/encounters/"+gisFilename);
        InputStream is = new FileInputStream(gisFile);

        int read = 0;
        byte[] bytes = new byte[BYTES_DOWNLOAD];
        OutputStream os = response.getOutputStream();

        while ((read = is.read(bytes)) != -1) {
          os.write(bytes, 0, read);
        }
        os.flush();
        os.close();

      } catch (Exception ioe) {
        ioe.printStackTrace();
        response.setContentType("text/html");
        PrintWriter out = response.getWriter();
        out.println(ServletUtilities.getHeader(request));
        out.println(
            "<html><body><p><strong>Error encountered</strong> with file writing. Check the relevant log.</p>");
        out.println(
            "<p>Please let the webmaster know you encountered an error at: EncounterSearchExportGeneGISFormat servlet</p></body></html>");
        out.println(ServletUtilities.getFooter());
        out.close();
        outp.close();
        outp = null;
      }

    } catch (Exception e) {
      e.printStackTrace();
      response.setContentType("text/html");
      PrintWriter out = response.getWriter();
      out.println(ServletUtilities.getHeader(request));
      out.println("<html><body><p><strong>Error encountered</strong></p>");
      out.println(
          "<p>Please let the webmaster know you encountered an error at: EncounterSearchExportGeneGISFormat servlet</p></body></html>");
      out.println(ServletUtilities.getFooter());
      out.close();
    }
    myShepherd.rollbackDBTransaction();
    myShepherd.closeDBTransaction();
  }