GranuleOverviewLevelDescriptor getLevel(final int index) {
// load level
// create the base grid to world transformation
ImageInputStream inStream = null;
ImageReader reader = null;
try {
// get a stream
assert cachedStreamSPI != null : "no cachedStreamSPI available!";
inStream =
cachedStreamSPI.createInputStreamInstance(
granuleUrl, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
if (inStream == null)
throw new IllegalArgumentException(
"Unable to create an inputstream for the granuleurl:"
+ (granuleUrl != null ? granuleUrl : "null"));
// get a reader and try to cache the relevant SPI
if (cachedReaderSPI == null) {
reader = ImageIOExt.getImageioReader(inStream);
if (reader != null) cachedReaderSPI = reader.getOriginatingProvider();
} else reader = cachedReaderSPI.createReaderInstance();
if (reader == null)
throw new IllegalArgumentException(
"Unable to get an ImageReader for the provided file " + granuleUrl.toString());
reader.setInput(inStream);
// call internal method which will close everything
return getLevel(index, reader);
} catch (IllegalStateException e) {
// clean up
try {
if (inStream != null) inStream.close();
} catch (Throwable ee) {
} finally {
if (reader != null) reader.dispose();
}
throw new IllegalArgumentException(e);
} catch (IOException e) {
// clean up
try {
if (inStream != null) inStream.close();
} catch (Throwable ee) {
} finally {
if (reader != null) reader.dispose();
}
throw new IllegalArgumentException(e);
}
}
/**
* Returns the geotiff metadata for this geotiff file.
*
* @return the metadata
*/
public GeoTiffIIOMetadataDecoder getMetadata() {
GeoTiffIIOMetadataDecoder metadata = null;
ImageReader reader = null;
boolean closeMe = true;
ImageInputStream stream = null;
try {
if ((source instanceof InputStream) || (source instanceof ImageInputStream)) {
closeMe = false;
}
if (source instanceof ImageInputStream) {
stream = (ImageInputStream) source;
} else {
inStreamSPI = ImageIOExt.getImageInputStreamSPI(source);
if (inStreamSPI == null) {
throw new IllegalArgumentException("No input stream for the provided source");
}
stream =
inStreamSPI.createInputStreamInstance(
source, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
}
if (stream == null) {
throw new IllegalArgumentException("No input stream for the provided source");
}
stream.mark();
reader = READER_SPI.createReaderInstance();
reader.setInput(stream);
final IIOMetadata iioMetadata = reader.getImageMetadata(0);
metadata = new GeoTiffIIOMetadataDecoder(iioMetadata);
} catch (IOException e) {
if (LOGGER.isLoggable(Level.SEVERE)) {
LOGGER.log(Level.SEVERE, e.getMessage(), e);
}
} finally {
if (reader != null)
try {
reader.dispose();
} catch (Throwable t) {
}
if (stream != null) {
try {
stream.reset();
} catch (Throwable t) {
}
if (closeMe) {
try {
stream.close();
} catch (Throwable t) {
}
}
}
}
return metadata;
}
static {
// issue 476: appContextProtection is disabled by default in JreMemoryLeakPreventionListener
// since Tomcat 7.0.42,
// so protect from sun.awt.AppContext ourselves
final ClassLoader loader = Thread.currentThread().getContextClassLoader();
try {
// Use the system classloader as the victim for this ClassLoader pinning we're about to do.
Thread.currentThread().setContextClassLoader(ClassLoader.getSystemClassLoader());
// Trigger a call to sun.awt.AppContext.getAppContext().
// This will pin the system class loader in memory but that shouldn't be an issue.
ImageIO.getCacheDirectory();
} catch (final Throwable t) { // NOPMD
LOG.info("prevention of AppContext ClassLoader leak failed, skipping");
} finally {
Thread.currentThread().setContextClassLoader(loader);
}
}
/**
* This method reads in the TIFF image, constructs an appropriate CRS, determines the math
* transform from raster to the CRS model, and constructs a GridCoverage.
*
* @param params currently ignored, potentially may be used for hints.
* @return grid coverage represented by the image
* @throws IOException on any IO related troubles
*/
public GridCoverage2D read(GeneralParameterValue[] params) throws IOException {
GeneralEnvelope requestedEnvelope = null;
Rectangle dim = null;
Color inputTransparentColor = null;
OverviewPolicy overviewPolicy = null;
int[] suggestedTileSize = null;
if (params != null) {
//
// Checking params
//
if (params != null) {
for (int i = 0; i < params.length; i++) {
final ParameterValue param = (ParameterValue) params[i];
final ReferenceIdentifier name = param.getDescriptor().getName();
if (name.equals(AbstractGridFormat.READ_GRIDGEOMETRY2D.getName())) {
final GridGeometry2D gg = (GridGeometry2D) param.getValue();
requestedEnvelope = new GeneralEnvelope((Envelope) gg.getEnvelope2D());
dim = gg.getGridRange2D().getBounds();
continue;
}
if (name.equals(AbstractGridFormat.OVERVIEW_POLICY.getName())) {
overviewPolicy = (OverviewPolicy) param.getValue();
continue;
}
if (name.equals(AbstractGridFormat.INPUT_TRANSPARENT_COLOR.getName())) {
inputTransparentColor = (Color) param.getValue();
continue;
}
if (name.equals(AbstractGridFormat.SUGGESTED_TILE_SIZE.getName())) {
String suggestedTileSize_ = (String) param.getValue();
if (suggestedTileSize_ != null && suggestedTileSize_.length() > 0) {
suggestedTileSize_ = suggestedTileSize_.trim();
int commaPosition = suggestedTileSize_.indexOf(",");
if (commaPosition < 0) {
int tileDim = Integer.parseInt(suggestedTileSize_);
suggestedTileSize = new int[] {tileDim, tileDim};
} else {
int tileW = Integer.parseInt(suggestedTileSize_.substring(0, commaPosition));
int tileH = Integer.parseInt(suggestedTileSize_.substring(commaPosition + 1));
suggestedTileSize = new int[] {tileW, tileH};
}
}
continue;
}
}
}
}
//
// set params
//
Integer imageChoice = new Integer(0);
final ImageReadParam readP = new ImageReadParam();
try {
imageChoice = setReadParams(overviewPolicy, readP, requestedEnvelope, dim);
} catch (TransformException e) {
new DataSourceException(e);
}
//
// IMAGE READ OPERATION
//
Hints newHints = null;
if (suggestedTileSize != null) {
newHints = hints.clone();
final ImageLayout layout = new ImageLayout();
layout.setTileGridXOffset(0);
layout.setTileGridYOffset(0);
layout.setTileHeight(suggestedTileSize[1]);
layout.setTileWidth(suggestedTileSize[0]);
newHints.add(new RenderingHints(JAI.KEY_IMAGE_LAYOUT, layout));
}
final ParameterBlock pbjRead = new ParameterBlock();
if (extOvrImgChoice >= 0 && imageChoice >= extOvrImgChoice) {
pbjRead.add(
ovrInStreamSPI.createInputStreamInstance(
ovrSource, ImageIO.getUseCache(), ImageIO.getCacheDirectory()));
pbjRead.add(imageChoice - extOvrImgChoice);
} else {
pbjRead.add(
inStreamSPI != null
? inStreamSPI.createInputStreamInstance(
source, ImageIO.getUseCache(), ImageIO.getCacheDirectory())
: ImageIO.createImageInputStream(source));
pbjRead.add(imageChoice);
}
pbjRead.add(Boolean.FALSE);
pbjRead.add(Boolean.FALSE);
pbjRead.add(Boolean.FALSE);
pbjRead.add(null);
pbjRead.add(null);
pbjRead.add(readP);
pbjRead.add(READER_SPI.createReaderInstance());
RenderedOp coverageRaster =
JAI.create("ImageRead", pbjRead, newHints != null ? (RenderingHints) newHints : null);
//
// MASKING INPUT COLOR as indicated
//
if (inputTransparentColor != null) {
coverageRaster =
new ImageWorker(coverageRaster)
.setRenderingHints(newHints)
.makeColorTransparent(inputTransparentColor)
.getRenderedOperation();
}
AffineTransform rasterToModel = getRescaledRasterToModel(coverageRaster);
try {
return createCoverage(coverageRaster, ProjectiveTransform.create(rasterToModel));
} catch (Exception e) {
// dispose and close file
ImageUtilities.disposePlanarImageChain(coverageRaster);
// rethrow
if (e instanceof DataSourceException) {
throw (DataSourceException) e;
}
throw new DataSourceException(e);
}
}
/**
* Collect georeferencing information about this geotiff.
*
* @param hints
* @throws DataSourceException
*/
private void getHRInfo(Hints hints) throws DataSourceException {
ImageReader reader = null;
ImageReader ovrReader = null;
ImageInputStream ovrStream = null;
try {
// //
//
// Get a reader for this format
//
// //
reader = READER_SPI.createReaderInstance();
// //
//
// get the METADATA
//
// //
inStream.mark();
reader.setInput(inStream);
final IIOMetadata iioMetadata = reader.getImageMetadata(0);
final GeoTiffIIOMetadataDecoder metadata = new GeoTiffIIOMetadataDecoder(iioMetadata);
gtcs = new GeoTiffMetadata2CRSAdapter(hints);
// //
//
// get the CRS INFO
//
// //
final Object tempCRS = this.hints.get(Hints.DEFAULT_COORDINATE_REFERENCE_SYSTEM);
if (tempCRS != null) {
this.crs = (CoordinateReferenceSystem) tempCRS;
if (LOGGER.isLoggable(Level.FINE))
LOGGER.log(Level.FINE, "Using forced coordinate reference system");
} else {
// check external prj first
crs = getCRS(source);
// now, if we did not want to override the inner CRS or we did not have any external PRJ at
// hand
// let's look inside the geotiff
if (!OVERRIDE_INNER_CRS || crs == null) {
if (metadata.hasGeoKey() && gtcs != null) {
crs = gtcs.createCoordinateSystem(metadata);
}
}
}
//
// No data
//
if (metadata.hasNoData()) {
noData = metadata.getNoData();
}
//
// parse and set layout
//
setLayout(reader);
// //
//
// get the dimension of the hr image and build the model as well as
// computing the resolution
// //
numOverviews = reader.getNumImages(true) - 1;
int hrWidth = reader.getWidth(0);
int hrHeight = reader.getHeight(0);
final Rectangle actualDim = new Rectangle(0, 0, hrWidth, hrHeight);
originalGridRange = new GridEnvelope2D(actualDim);
if (gtcs != null
&& metadata != null
&& (metadata.hasModelTrasformation()
|| (metadata.hasPixelScales() && metadata.hasTiePoints()))) {
this.raster2Model = GeoTiffMetadata2CRSAdapter.getRasterToModel(metadata);
} else {
// world file
this.raster2Model = parseWorldFile(source);
// now world file --> mapinfo?
if (raster2Model == null) {
MapInfoFileReader mifReader = parseMapInfoFile(source);
if (mifReader != null) {
raster2Model = mifReader.getTransform();
crs = mifReader.getCRS();
}
}
}
if (crs == null) {
if (LOGGER.isLoggable(Level.WARNING)) {
LOGGER.warning("Coordinate Reference System is not available");
}
crs = AbstractGridFormat.getDefaultCRS();
}
if (this.raster2Model == null) {
TiePoint[] modelTiePoints = metadata.getModelTiePoints();
if (modelTiePoints != null && modelTiePoints.length > 1) {
// use a unit transform and expose the GCPs
gcps = new GroundControlPoints(Arrays.asList(modelTiePoints), crs);
raster2Model = ProjectiveTransform.create(new AffineTransform());
crs = AbstractGridFormat.getDefaultCRS();
} else {
throw new DataSourceException("Raster to Model Transformation is not available");
}
}
// create envelope using corner transformation
final AffineTransform tempTransform = new AffineTransform((AffineTransform) raster2Model);
tempTransform.concatenate(CoverageUtilities.CENTER_TO_CORNER);
originalEnvelope =
CRS.transform(ProjectiveTransform.create(tempTransform), new GeneralEnvelope(actualDim));
originalEnvelope.setCoordinateReferenceSystem(crs);
// ///
//
// setting the higher resolution available for this coverage
//
// ///
highestRes = new double[2];
highestRes[0] = XAffineTransform.getScaleX0(tempTransform);
highestRes[1] = XAffineTransform.getScaleY0(tempTransform);
if (ovrInStreamSPI != null) {
ovrReader = READER_SPI.createReaderInstance();
ovrStream =
ovrInStreamSPI.createInputStreamInstance(
ovrSource, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
ovrReader.setInput(ovrStream);
// this includes the real image as this is a image index, we need to add one.
extOvrImgChoice = numOverviews + 1;
numOverviews = numOverviews + ovrReader.getNumImages(true);
if (numOverviews < extOvrImgChoice) extOvrImgChoice = -1;
}
// //
//
// get information for the successive images
//
// //
if (numOverviews >= 1) {
overViewResolutions = new double[numOverviews][2];
// Internal overviews start at 1, so lastInternalOverview matches numOverviews if no
// external.
int firstExternalOverview = extOvrImgChoice == -1 ? numOverviews : extOvrImgChoice - 1;
double spanRes0 = highestRes[0] * this.originalGridRange.getSpan(0);
double spanRes1 = highestRes[1] * this.originalGridRange.getSpan(1);
for (int i = 0; i < firstExternalOverview; i++) {
overViewResolutions[i][0] = spanRes0 / reader.getWidth(i + 1);
overViewResolutions[i][1] = spanRes1 / reader.getHeight(i + 1);
}
for (int i = firstExternalOverview; i < numOverviews; i++) {
overViewResolutions[i][0] = spanRes0 / ovrReader.getWidth(i - firstExternalOverview);
overViewResolutions[i][1] = spanRes1 / ovrReader.getHeight(i - firstExternalOverview);
}
} else overViewResolutions = null;
} catch (Throwable e) {
throw new DataSourceException(e);
} finally {
if (reader != null)
try {
reader.dispose();
} catch (Throwable t) {
}
if (ovrReader != null)
try {
ovrReader.dispose();
} catch (Throwable t) {
}
if (ovrStream != null)
try {
ovrStream.close();
} catch (Throwable t) {
}
if (inStream != null)
try {
inStream.reset();
} catch (Throwable t) {
}
}
}
/**
* Creates a new instance of GeoTiffReader
*
* @param input the GeoTiff file
* @param uHints user-supplied hints TODO currently are unused
* @throws DataSourceException
*/
public GeoTiffReader(Object input, Hints uHints) throws DataSourceException {
super(input, uHints);
// /////////////////////////////////////////////////////////////////////
//
// Set the source being careful in case it is an URL pointing to a file
//
// /////////////////////////////////////////////////////////////////////
try {
// setting source
if (input instanceof URL) {
final URL sourceURL = (URL) input;
source = DataUtilities.urlToFile(sourceURL);
}
closeMe = true;
// /////////////////////////////////////////////////////////////////////
//
// Get a stream in order to read from it for getting the basic
// information for this coverage
//
// /////////////////////////////////////////////////////////////////////
if ((source instanceof InputStream) || (source instanceof ImageInputStream)) closeMe = false;
if (source instanceof ImageInputStream) inStream = (ImageInputStream) source;
else {
inStreamSPI = ImageIOExt.getImageInputStreamSPI(source);
if (inStreamSPI == null)
throw new IllegalArgumentException("No input stream for the provided source");
inStream =
inStreamSPI.createInputStreamInstance(
source, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
}
if (inStream == null) {
// Try to figure out what went wrong and provide some info to the user.
if (source instanceof File) {
File f = (File) source;
if (!f.exists()) {
throw new FileNotFoundException("File " + f.getAbsolutePath() + " does not exist.");
} else if (f.isDirectory()) {
throw new IOException("File " + f.getAbsolutePath() + " is a directory.");
} else if (!f.canRead()) {
throw new IOException("File " + f.getAbsolutePath() + " can not be read.");
}
}
// If we can't give anything more specific, throw the generic error.
throw new IllegalArgumentException("No input stream for the provided source");
}
checkForExternalOverviews();
// /////////////////////////////////////////////////////////////////////
//
// Informations about multiple levels and such
//
// /////////////////////////////////////////////////////////////////////
getHRInfo(this.hints);
// /////////////////////////////////////////////////////////////////////
//
// Coverage name
//
// /////////////////////////////////////////////////////////////////////
coverageName = source instanceof File ? ((File) source).getName() : "geotiff_coverage";
final int dotIndex = coverageName.lastIndexOf('.');
if (dotIndex != -1 && dotIndex != coverageName.length())
coverageName = coverageName.substring(0, dotIndex);
} catch (IOException e) {
throw new DataSourceException(e);
} finally {
// /////////////////////////////////////////////////////////////////////
//
// Freeing streams
//
// /////////////////////////////////////////////////////////////////////
if (closeMe && inStream != null) //
try {
inStream.close();
} catch (Throwable t) {
}
}
}
public void lifecycleEvent(LifecycleEvent event) {
// Initialise these classes when Tomcat starts
if (Lifecycle.INIT_EVENT.equals(event.getType())) {
ClassLoader loader = Thread.currentThread().getContextClassLoader();
try {
// Use the system classloader as the victim for all this
// ClassLoader pinning we're about to do.
Thread.currentThread().setContextClassLoader(ClassLoader.getSystemClassLoader());
/*
* First call to this loads all drivers in the current class
* loader
*/
if (driverManagerProtection) {
DriverManager.getDrivers();
}
/*
* Several components end up calling:
* sun.awt.AppContext.getAppContext()
*
* Those libraries / components known to trigger memory leaks
* due to eventual calls to getAppContext() are:
* - Google Web Toolkit via its use of javax.imageio
* - Tomcat via its use of java.beans.Introspector.flushCaches()
* in 1.6.0_15 onwards
* - others TBD
*/
// Trigger a call to sun.awt.AppContext.getAppContext(). This
// will pin the system class loader in memory but that shouldn't
// be an issue.
if (appContextProtection) {
ImageIO.getCacheDirectory();
}
// Trigger the creation of the AWT (AWT-Windows, AWT-XAWT,
// etc.) thread
if (awtThreadProtection) {
java.awt.Toolkit.getDefaultToolkit();
}
/*
* Several components end up calling
* sun.misc.GC.requestLatency(long) which creates a daemon
* thread without setting the TCCL.
*
* Those libraries / components known to trigger memory leaks
* due to eventual calls to requestLatency(long) are:
* - javax.management.remote.rmi.RMIConnectorServer.start()
*
* Note: Long.MAX_VALUE is a special case that causes the thread
* to terminate
*
*/
if (gcDaemonProtection) {
try {
Class<?> clazz = Class.forName("sun.misc.GC");
Method method = clazz.getDeclaredMethod("requestLatency", new Class[] {long.class});
method.invoke(null, Long.valueOf(Long.MAX_VALUE - 1));
} catch (ClassNotFoundException e) {
if (System.getProperty("java.vendor").startsWith("Sun")) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
} else {
log.debug(sm.getString("jreLeakListener.gcDaemonFail"), e);
}
} catch (SecurityException e) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
} catch (NoSuchMethodException e) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
} catch (IllegalArgumentException e) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
} catch (IllegalAccessException e) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
} catch (InvocationTargetException e) {
log.error(sm.getString("jreLeakListener.gcDaemonFail"), e);
}
}
/*
* Calling getPolicy retains a static reference to the context
* class loader.
*/
if (securityPolicyProtection) {
try {
// Policy.getPolicy();
Class<?> policyClass = Class.forName("javax.security.auth.Policy");
Method method = policyClass.getMethod("getPolicy");
method.invoke(null);
} catch (ClassNotFoundException e) {
// Ignore. The class is deprecated.
} catch (SecurityException e) {
// Ignore. Don't need call to getPolicy() to be
// successful, just need to trigger static initializer.
} catch (NoSuchMethodException e) {
log.warn(sm.getString("jreLeakListener.authPolicyFail"), e);
} catch (IllegalArgumentException e) {
log.warn(sm.getString("jreLeakListener.authPolicyFail"), e);
} catch (IllegalAccessException e) {
log.warn(sm.getString("jreLeakListener.authPolicyFail"), e);
} catch (InvocationTargetException e) {
log.warn(sm.getString("jreLeakListener.authPolicyFail"), e);
}
}
/*
* Initializing javax.security.auth.login.Configuration retains a static reference to the context
* class loader.
*/
if (securityLoginConfigurationProtection) {
try {
Class.forName(
"javax.security.auth.login.Configuration",
true,
ClassLoader.getSystemClassLoader());
} catch (ClassNotFoundException e) {
// Ignore
}
}
/*
* Creating a MessageDigest during web application startup
* initializes the Java Cryptography Architecture. Under certain
* conditions this starts a Token poller thread with TCCL equal
* to the web application class loader.
*
* Instead we initialize JCA right now.
*/
if (tokenPollerProtection) {
java.security.Security.getProviders();
}
/*
* Several components end up opening JarURLConnections without
* first disabling caching. This effectively locks the file.
* Whilst more noticeable and harder to ignore on Windows, it
* affects all operating systems.
*
* Those libraries/components known to trigger this issue
* include:
* - log4j versions 1.2.15 and earlier
* - javax.xml.bind.JAXBContext.newInstance()
*/
// Set the default URL caching policy to not to cache
if (urlCacheProtection) {
try {
// Doesn't matter that this JAR doesn't exist - just as
// long as the URL is well-formed
URL url = new URL("jar:file://dummy.jar!/");
URLConnection uConn = url.openConnection();
uConn.setDefaultUseCaches(false);
} catch (MalformedURLException e) {
log.error(sm.getString("jreLeakListener.jarUrlConnCacheFail"), e);
} catch (IOException e) {
log.error(sm.getString("jreLeakListener.jarUrlConnCacheFail"), e);
}
}
/*
* Haven't got to the root of what is going on with this leak
* but if a web app is the first to make the calls below the web
* application class loader will be pinned in memory.
*/
if (xmlParsingProtection) {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
try {
factory.newDocumentBuilder();
} catch (ParserConfigurationException e) {
log.error(sm.getString("jreLeakListener.xmlParseFail"), e);
}
}
if (ldapPoolProtection) {
try {
Class.forName("com.sun.jndi.ldap.LdapPoolManager");
} catch (ClassNotFoundException e) {
if (System.getProperty("java.vendor").startsWith("Sun")) {
log.error(sm.getString("jreLeakListener.ldapPoolManagerFail"), e);
} else {
log.debug(sm.getString("jreLeakListener.ldapPoolManagerFail"), e);
}
}
}
if (classesToInitialize != null) {
StringTokenizer strTok = new StringTokenizer(classesToInitialize, ", \r\n\t");
while (strTok.hasMoreTokens()) {
String classNameToLoad = strTok.nextToken();
try {
Class.forName(classNameToLoad);
} catch (ClassNotFoundException e) {
log.error(sm.getString("jreLeakListener.classToInitializeFail", classNameToLoad), e);
// continue with next class to load
}
}
}
} finally {
Thread.currentThread().setContextClassLoader(loader);
}
}
}
/**
* Load a specified a raster as a portion of the granule describe by this {@link
* GranuleDescriptor}.
*
* @param imageReadParameters the {@link ImageReadParam} to use for reading.
* @param index the index to use for the {@link ImageReader}.
* @param cropBBox the bbox to use for cropping.
* @param mosaicWorldToGrid the cropping grid to world transform.
* @param request the incoming request to satisfy.
* @param hints {@link Hints} to be used for creating this raster.
* @return a specified a raster as a portion of the granule describe by this {@link
* GranuleDescriptor}.
* @throws IOException in case an error occurs.
*/
public GranuleLoadingResult loadRaster(
final ImageReadParam imageReadParameters,
final int index,
final ReferencedEnvelope cropBBox,
final MathTransform2D mosaicWorldToGrid,
final RasterLayerRequest request,
final Hints hints)
throws IOException {
if (LOGGER.isLoggable(java.util.logging.Level.FINER)) {
final String name = Thread.currentThread().getName();
LOGGER.finer(
"Thread:" + name + " Loading raster data for granuleDescriptor " + this.toString());
}
ImageReadParam readParameters = null;
int imageIndex;
final ReferencedEnvelope bbox =
inclusionGeometry != null
? new ReferencedEnvelope(
granuleBBOX.intersection(inclusionGeometry.getEnvelopeInternal()),
granuleBBOX.getCoordinateReferenceSystem())
: granuleBBOX;
boolean doFiltering = false;
if (filterMe) {
doFiltering = Utils.areaIsDifferent(inclusionGeometry, baseGridToWorld, granuleBBOX);
}
// intersection of this tile bound with the current crop bbox
final ReferencedEnvelope intersection =
new ReferencedEnvelope(
bbox.intersection(cropBBox), cropBBox.getCoordinateReferenceSystem());
if (intersection.isEmpty()) {
if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
LOGGER.fine(
new StringBuilder("Got empty intersection for granule ")
.append(this.toString())
.append(" with request ")
.append(request.toString())
.append(" Resulting in no granule loaded: Empty result")
.toString());
}
return null;
}
ImageInputStream inStream = null;
ImageReader reader = null;
try {
//
// get info about the raster we have to read
//
// get a stream
assert cachedStreamSPI != null : "no cachedStreamSPI available!";
inStream =
cachedStreamSPI.createInputStreamInstance(
granuleUrl, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
if (inStream == null) return null;
// get a reader and try to cache the relevant SPI
if (cachedReaderSPI == null) {
reader = ImageIOExt.getImageioReader(inStream);
if (reader != null) cachedReaderSPI = reader.getOriginatingProvider();
} else reader = cachedReaderSPI.createReaderInstance();
if (reader == null) {
if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
LOGGER.warning(
new StringBuilder("Unable to get s reader for granuleDescriptor ")
.append(this.toString())
.append(" with request ")
.append(request.toString())
.append(" Resulting in no granule loaded: Empty result")
.toString());
}
return null;
}
// set input
reader.setInput(inStream);
// Checking for heterogeneous granules
if (request.isHeterogeneousGranules()) {
// create read parameters
readParameters = new ImageReadParam();
// override the overviews controller for the base layer
imageIndex =
ReadParamsController.setReadParams(
request.getRequestedResolution(),
request.getOverviewPolicy(),
request.getDecimationPolicy(),
readParameters,
request.rasterManager,
overviewsController);
} else {
imageIndex = index;
readParameters = imageReadParameters;
}
// get selected level and base level dimensions
final GranuleOverviewLevelDescriptor selectedlevel = getLevel(imageIndex, reader);
// now create the crop grid to world which can be used to decide
// which source area we need to crop in the selected level taking
// into account the scale factors imposed by the selection of this
// level together with the base level grid to world transformation
AffineTransform2D cropWorldToGrid =
new AffineTransform2D(selectedlevel.gridToWorldTransformCorner);
cropWorldToGrid = (AffineTransform2D) cropWorldToGrid.inverse();
// computing the crop source area which lives into the
// selected level raster space, NOTICE that at the end we need to
// take into account the fact that we might also decimate therefore
// we cannot just use the crop grid to world but we need to correct
// it.
final Rectangle sourceArea =
CRS.transform(cropWorldToGrid, intersection).toRectangle2D().getBounds();
// gutter
if (selectedlevel.baseToLevelTransform.isIdentity()) sourceArea.grow(2, 2);
XRectangle2D.intersect(
sourceArea,
selectedlevel.rasterDimensions,
sourceArea); // make sure roundings don't bother us
// is it empty??
if (sourceArea.isEmpty()) {
if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
LOGGER.fine(
"Got empty area for granuleDescriptor "
+ this.toString()
+ " with request "
+ request.toString()
+ " Resulting in no granule loaded: Empty result");
}
return null;
} else if (LOGGER.isLoggable(java.util.logging.Level.FINER)) {
LOGGER.finer(
"Loading level "
+ imageIndex
+ " with source region: "
+ sourceArea
+ " subsampling: "
+ readParameters.getSourceXSubsampling()
+ ","
+ readParameters.getSourceYSubsampling()
+ " for granule:"
+ granuleUrl);
}
// Setting subsampling
int newSubSamplingFactor = 0;
final String pluginName = cachedReaderSPI.getPluginClassName();
if (pluginName != null && pluginName.equals(ImageUtilities.DIRECT_KAKADU_PLUGIN)) {
final int ssx = readParameters.getSourceXSubsampling();
final int ssy = readParameters.getSourceYSubsampling();
newSubSamplingFactor = ImageIOUtilities.getSubSamplingFactor2(ssx, ssy);
if (newSubSamplingFactor != 0) {
if (newSubSamplingFactor > maxDecimationFactor && maxDecimationFactor != -1) {
newSubSamplingFactor = maxDecimationFactor;
}
readParameters.setSourceSubsampling(newSubSamplingFactor, newSubSamplingFactor, 0, 0);
}
}
// set the source region
readParameters.setSourceRegion(sourceArea);
final RenderedImage raster;
try {
// read
raster =
request
.getReadType()
.read(
readParameters,
imageIndex,
granuleUrl,
selectedlevel.rasterDimensions,
reader,
hints,
false);
} catch (Throwable e) {
if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
LOGGER.log(
java.util.logging.Level.FINE,
"Unable to load raster for granuleDescriptor "
+ this.toString()
+ " with request "
+ request.toString()
+ " Resulting in no granule loaded: Empty result",
e);
}
return null;
}
// use fixed source area
sourceArea.setRect(readParameters.getSourceRegion());
//
// setting new coefficients to define a new affineTransformation
// to be applied to the grid to world transformation
// -----------------------------------------------------------------------------------
//
// With respect to the original envelope, the obtained planarImage
// needs to be rescaled. The scaling factors are computed as the
// ratio between the cropped source region sizes and the read
// image sizes.
//
// place it in the mosaic using the coords created above;
double decimationScaleX = ((1.0 * sourceArea.width) / raster.getWidth());
double decimationScaleY = ((1.0 * sourceArea.height) / raster.getHeight());
final AffineTransform decimationScaleTranform =
XAffineTransform.getScaleInstance(decimationScaleX, decimationScaleY);
// keep into account translation to work into the selected level raster space
final AffineTransform afterDecimationTranslateTranform =
XAffineTransform.getTranslateInstance(sourceArea.x, sourceArea.y);
// now we need to go back to the base level raster space
final AffineTransform backToBaseLevelScaleTransform = selectedlevel.baseToLevelTransform;
// now create the overall transform
final AffineTransform finalRaster2Model = new AffineTransform(baseGridToWorld);
finalRaster2Model.concatenate(CoverageUtilities.CENTER_TO_CORNER);
final double x = finalRaster2Model.getTranslateX();
final double y = finalRaster2Model.getTranslateY();
if (!XAffineTransform.isIdentity(backToBaseLevelScaleTransform, Utils.AFFINE_IDENTITY_EPS))
finalRaster2Model.concatenate(backToBaseLevelScaleTransform);
if (!XAffineTransform.isIdentity(afterDecimationTranslateTranform, Utils.AFFINE_IDENTITY_EPS))
finalRaster2Model.concatenate(afterDecimationTranslateTranform);
if (!XAffineTransform.isIdentity(decimationScaleTranform, Utils.AFFINE_IDENTITY_EPS))
finalRaster2Model.concatenate(decimationScaleTranform);
// keep into account translation factors to place this tile
finalRaster2Model.preConcatenate((AffineTransform) mosaicWorldToGrid);
final Interpolation interpolation = request.getInterpolation();
// paranoiac check to avoid that JAI freaks out when computing its internal layouT on images
// that are too small
Rectangle2D finalLayout =
ImageUtilities.layoutHelper(
raster,
(float) finalRaster2Model.getScaleX(),
(float) finalRaster2Model.getScaleY(),
(float) finalRaster2Model.getTranslateX(),
(float) finalRaster2Model.getTranslateY(),
interpolation);
if (finalLayout.isEmpty()) {
if (LOGGER.isLoggable(java.util.logging.Level.INFO))
LOGGER.info(
"Unable to create a granuleDescriptor "
+ this.toString()
+ " due to jai scale bug creating a null source area");
return null;
}
ROI granuleLoadingShape = null;
if (granuleROIShape != null) {
final Point2D translate =
mosaicWorldToGrid.transform(new DirectPosition2D(x, y), (Point2D) null);
AffineTransform tx2 = new AffineTransform();
tx2.preConcatenate(
AffineTransform.getScaleInstance(
((AffineTransform) mosaicWorldToGrid).getScaleX(),
-((AffineTransform) mosaicWorldToGrid).getScaleY()));
tx2.preConcatenate(
AffineTransform.getScaleInstance(
((AffineTransform) baseGridToWorld).getScaleX(),
-((AffineTransform) baseGridToWorld).getScaleY()));
tx2.preConcatenate(
AffineTransform.getTranslateInstance(translate.getX(), translate.getY()));
granuleLoadingShape = (ROI) granuleROIShape.transform(tx2);
}
// apply the affine transform conserving indexed color model
final RenderingHints localHints =
new RenderingHints(
JAI.KEY_REPLACE_INDEX_COLOR_MODEL,
interpolation instanceof InterpolationNearest ? Boolean.FALSE : Boolean.TRUE);
if (XAffineTransform.isIdentity(finalRaster2Model, Utils.AFFINE_IDENTITY_EPS)) {
return new GranuleLoadingResult(raster, granuleLoadingShape, granuleUrl, doFiltering);
} else {
//
// In case we are asked to use certain tile dimensions we tile
// also at this stage in case the read type is Direct since
// buffered images comes up untiled and this can affect the
// performances of the subsequent affine operation.
//
final Dimension tileDimensions = request.getTileDimensions();
if (tileDimensions != null && request.getReadType().equals(ReadType.DIRECT_READ)) {
final ImageLayout layout = new ImageLayout();
layout.setTileHeight(tileDimensions.width).setTileWidth(tileDimensions.height);
localHints.add(new RenderingHints(JAI.KEY_IMAGE_LAYOUT, layout));
} else {
if (hints != null && hints.containsKey(JAI.KEY_IMAGE_LAYOUT)) {
final Object layout = hints.get(JAI.KEY_IMAGE_LAYOUT);
if (layout != null && layout instanceof ImageLayout) {
localHints.add(
new RenderingHints(JAI.KEY_IMAGE_LAYOUT, ((ImageLayout) layout).clone()));
}
}
}
if (hints != null && hints.containsKey(JAI.KEY_TILE_CACHE)) {
final Object cache = hints.get(JAI.KEY_TILE_CACHE);
if (cache != null && cache instanceof TileCache)
localHints.add(new RenderingHints(JAI.KEY_TILE_CACHE, (TileCache) cache));
}
if (hints != null && hints.containsKey(JAI.KEY_TILE_SCHEDULER)) {
final Object scheduler = hints.get(JAI.KEY_TILE_SCHEDULER);
if (scheduler != null && scheduler instanceof TileScheduler)
localHints.add(new RenderingHints(JAI.KEY_TILE_SCHEDULER, (TileScheduler) scheduler));
}
boolean addBorderExtender = true;
if (hints != null && hints.containsKey(JAI.KEY_BORDER_EXTENDER)) {
final Object extender = hints.get(JAI.KEY_BORDER_EXTENDER);
if (extender != null && extender instanceof BorderExtender) {
localHints.add(new RenderingHints(JAI.KEY_BORDER_EXTENDER, (BorderExtender) extender));
addBorderExtender = false;
}
}
// border extender
if (addBorderExtender) {
localHints.add(ImageUtilities.BORDER_EXTENDER_HINTS);
}
// boolean hasScaleX=!(Math.abs(finalRaster2Model.getScaleX()-1) <
// 1E-2/(raster.getWidth()+1-raster.getMinX()));
// boolean hasScaleY=!(Math.abs(finalRaster2Model.getScaleY()-1) <
// 1E-2/(raster.getHeight()+1-raster.getMinY()));
// boolean hasShearX=!(finalRaster2Model.getShearX() == 0.0);
// boolean hasShearY=!(finalRaster2Model.getShearY() == 0.0);
// boolean hasTranslateX=!(Math.abs(finalRaster2Model.getTranslateX()) <
// 0.01F);
// boolean hasTranslateY=!(Math.abs(finalRaster2Model.getTranslateY()) <
// 0.01F);
// boolean isTranslateXInt=!(Math.abs(finalRaster2Model.getTranslateX() -
// (int) finalRaster2Model.getTranslateX()) < 0.01F);
// boolean isTranslateYInt=!(Math.abs(finalRaster2Model.getTranslateY() -
// (int) finalRaster2Model.getTranslateY()) < 0.01F);
//
// boolean isIdentity = finalRaster2Model.isIdentity() &&
// !hasScaleX&&!hasScaleY &&!hasTranslateX&&!hasTranslateY;
// // TODO how can we check that the a skew is harmelss????
// if(isIdentity){
// // TODO check if we are missing anything like tiling or such that
// comes from hints
// return new GranuleLoadingResult(raster, granuleLoadingShape,
// granuleUrl, doFiltering);
// }
//
// // TOLERANCE ON PIXELS SIZE
//
// // Check and see if the affine transform is in fact doing
// // a Translate operation. That is a scale by 1 and no rotation.
// // In which case call translate. Note that only integer translate
// // is applicable. For non-integer translate we'll have to do the
// // affine.
// // If the hints contain an ImageLayout hint, we can't use
// // TranslateIntOpImage since it isn't capable of dealing with that.
// // Get ImageLayout from renderHints if any.
// ImageLayout layout = RIFUtil.getImageLayoutHint(localHints);
// if ( !hasScaleX &&
// !hasScaleY &&
// !hasShearX&&
// !hasShearY&&
// isTranslateXInt&&
// isTranslateYInt&&
// layout == null) {
// // It's a integer translate
// return new GranuleLoadingResult(new TranslateIntOpImage(raster,
// localHints,
// (int) finalRaster2Model.getShearX(),
// (int)
// finalRaster2Model.getShearY()),granuleLoadingShape, granuleUrl, doFiltering);
// }
ImageWorker iw = new ImageWorker(raster);
iw.setRenderingHints(localHints);
iw.affine(finalRaster2Model, interpolation, request.getBackgroundValues());
return new GranuleLoadingResult(
iw.getRenderedImage(), granuleLoadingShape, granuleUrl, doFiltering);
}
} catch (IllegalStateException e) {
if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
LOGGER.log(
java.util.logging.Level.WARNING,
new StringBuilder("Unable to load raster for granuleDescriptor ")
.append(this.toString())
.append(" with request ")
.append(request.toString())
.append(" Resulting in no granule loaded: Empty result")
.toString(),
e);
}
return null;
} catch (org.opengis.referencing.operation.NoninvertibleTransformException e) {
if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
LOGGER.log(
java.util.logging.Level.WARNING,
new StringBuilder("Unable to load raster for granuleDescriptor ")
.append(this.toString())
.append(" with request ")
.append(request.toString())
.append(" Resulting in no granule loaded: Empty result")
.toString(),
e);
}
return null;
} catch (TransformException e) {
if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
LOGGER.log(
java.util.logging.Level.WARNING,
new StringBuilder("Unable to load raster for granuleDescriptor ")
.append(this.toString())
.append(" with request ")
.append(request.toString())
.append(" Resulting in no granule loaded: Empty result")
.toString(),
e);
}
return null;
} finally {
try {
if (request.getReadType() != ReadType.JAI_IMAGEREAD && inStream != null) {
inStream.close();
}
} finally {
if (request.getReadType() != ReadType.JAI_IMAGEREAD && reader != null) {
reader.dispose();
}
}
}
}
private void init(
final BoundingBox granuleBBOX,
final URL granuleUrl,
final ImageReaderSpi suggestedSPI,
final Geometry inclusionGeometry,
final boolean heterogeneousGranules,
final boolean handleArtifactsFiltering) {
this.granuleBBOX = ReferencedEnvelope.reference(granuleBBOX);
this.granuleUrl = granuleUrl;
this.inclusionGeometry = inclusionGeometry;
this.handleArtifactsFiltering = handleArtifactsFiltering;
filterMe = handleArtifactsFiltering && inclusionGeometry != null;
// create the base grid to world transformation
ImageInputStream inStream = null;
ImageReader reader = null;
try {
//
// get info about the raster we have to read
//
// get a stream
if (cachedStreamSPI == null) {
cachedStreamSPI = ImageIOExt.getImageInputStreamSPI(granuleUrl, true);
if (cachedStreamSPI == null) {
final File file = DataUtilities.urlToFile(granuleUrl);
if (file != null) {
if (LOGGER.isLoggable(Level.WARNING)) {
LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
}
}
throw new IllegalArgumentException(
"Unable to get an input stream for the provided granule " + granuleUrl.toString());
}
}
assert cachedStreamSPI != null : "no cachedStreamSPI available!";
inStream =
cachedStreamSPI.createInputStreamInstance(
granuleUrl, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
if (inStream == null) {
final File file = DataUtilities.urlToFile(granuleUrl);
if (file != null) {
if (LOGGER.isLoggable(Level.WARNING)) {
LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
}
}
throw new IllegalArgumentException(
"Unable to get an input stream for the provided file " + granuleUrl.toString());
}
// get a reader and try to cache the suggested SPI first
if (cachedReaderSPI == null) {
inStream.mark();
if (suggestedSPI != null && suggestedSPI.canDecodeInput(inStream)) {
cachedReaderSPI = suggestedSPI;
inStream.reset();
} else {
inStream.mark();
reader = ImageIOExt.getImageioReader(inStream);
if (reader != null) cachedReaderSPI = reader.getOriginatingProvider();
inStream.reset();
}
}
reader = cachedReaderSPI.createReaderInstance();
if (reader == null)
throw new IllegalArgumentException(
"Unable to get an ImageReader for the provided file " + granuleUrl.toString());
reader.setInput(inStream);
// get selected level and base level dimensions
final Rectangle originalDimension = Utils.getDimension(0, reader);
// build the g2W for this tile, in principle we should get it
// somehow from the tile itself or from the index, but at the moment
// we do not have such info, hence we assume that it is a simple
// scale and translate
final GridToEnvelopeMapper geMapper =
new GridToEnvelopeMapper(new GridEnvelope2D(originalDimension), granuleBBOX);
geMapper.setPixelAnchor(
PixelInCell
.CELL_CENTER); // this is the default behavior but it is nice to write it down anyway
this.baseGridToWorld = geMapper.createAffineTransform();
try {
if (inclusionGeometry != null) {
geMapper.setPixelAnchor(PixelInCell.CELL_CORNER);
Geometry mapped = JTS.transform(inclusionGeometry, geMapper.createTransform().inverse());
this.granuleROIShape = new ROIGeometry(mapped);
}
} catch (TransformException e1) {
throw new IllegalArgumentException(e1);
}
// add the base level
this.granuleLevels.put(
Integer.valueOf(0),
new GranuleOverviewLevelDescriptor(
1, 1, originalDimension.width, originalDimension.height));
////////////////////// Setting overviewController ///////////////////////
if (heterogeneousGranules) {
// //
//
// Right now we are setting up overviewsController by assuming that
// overviews are internal images as happens in TIFF images
// We can improve this by leveraging on coverageReaders
//
// //
// Getting the first level descriptor
final GranuleOverviewLevelDescriptor baseOverviewLevelDescriptor = granuleLevels.get(0);
// Variables initialization
final int numberOfOvervies = reader.getNumImages(true) - 1;
final AffineTransform2D baseG2W = baseOverviewLevelDescriptor.getGridToWorldTransform();
final int width = baseOverviewLevelDescriptor.getWidth();
final int height = baseOverviewLevelDescriptor.getHeight();
final double resX = AffineTransform2D.getScaleX0(baseG2W);
final double resY = AffineTransform2D.getScaleY0(baseG2W);
final double[] highestRes = new double[] {resX, resY};
final double[][] overviewsResolution = new double[numberOfOvervies][2];
// Populating overviews and initializing overviewsController
for (int i = 0; i < numberOfOvervies; i++) {
overviewsResolution[i][0] = (highestRes[0] * width) / reader.getWidth(i + 1);
overviewsResolution[i][1] = (highestRes[1] * height) / reader.getWidth(i + 1);
}
overviewsController =
new OverviewsController(highestRes, numberOfOvervies, overviewsResolution);
}
//////////////////////////////////////////////////////////////////////////
} catch (IllegalStateException e) {
throw new IllegalArgumentException(e);
} catch (IOException e) {
throw new IllegalArgumentException(e);
} finally {
// close/dispose stream and readers
try {
if (inStream != null) {
inStream.close();
}
} catch (Throwable e) {
throw new IllegalArgumentException(e);
} finally {
if (reader != null) {
reader.dispose();
}
}
}
}
public static void doHacks() {
if (skipHack("org.apache.cxf.JDKBugHacks.all")) {
return;
}
try {
// Use the system classloader as the victim for all this
// ClassLoader pinning we're about to do.
ClassLoaderHolder orig =
ClassLoaderUtils.setThreadContextClassloader(ClassLoader.getSystemClassLoader());
try {
try {
// Trigger a call to sun.awt.AppContext.getAppContext()
if (!skipHack("org.apache.cxf.JDKBugHacks.imageIO")) {
ImageIO.getCacheDirectory();
}
} catch (Throwable t) {
// ignore
}
try {
// DocumentBuilderFactory seems to SOMETIMES pin the classloader
if (!skipHack("org.apache.cxf.JDKBugHacks.documentBuilderFactory")) {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.newDocumentBuilder();
}
} catch (Throwable e) {
// ignore
}
// Several components end up calling:
// sun.misc.GC.requestLatency(long)
//
// Those libraries / components known to trigger memory leaks due to
// eventual calls to requestLatency(long) are:
// - javax.management.remote.rmi.RMIConnectorServer.start()
try {
if (!skipHack("org.apache.cxf.JDKBugHacks.gcRequestLatency")) {
Class<?> clazz = Class.forName("sun.misc.GC");
Method method = clazz.getDeclaredMethod("currentLatencyTarget");
Long l = (Long) method.invoke(null);
if (l != null && l.longValue() == 0) {
// something already set it, move on
method = clazz.getDeclaredMethod("requestLatency", new Class[] {Long.TYPE});
method.invoke(null, Long.valueOf(36000000));
}
}
} catch (Throwable e) {
// ignore
}
// Calling getPolicy retains a static reference to the context
// class loader.
try {
// Policy.getPolicy();
if (!skipHack("org.apache.cxf.JDKBugHacks.policy")) {
Class<?> policyClass = Class.forName("javax.security.auth.Policy");
Method method = policyClass.getMethod("getPolicy");
method.invoke(null);
}
} catch (Throwable e) {
// ignore
}
try {
// Initializing javax.security.auth.login.Configuration retains a static reference
// to the context class loader.
if (!skipHack("org.apache.cxf.JDKBugHacks.authConfiguration")) {
Class.forName(
"javax.security.auth.login.Configuration",
true,
ClassLoader.getSystemClassLoader());
}
} catch (Throwable e) {
// Ignore
}
// Creating a MessageDigest during web application startup
// initializes the Java Cryptography Architecture. Under certain
// conditions this starts a Token poller thread with TCCL equal
// to the web application class loader.
if (!skipHack("org.apache.cxf.JDKBugHacks.securityProviders")) {
java.security.Security.getProviders();
}
try {
// Several components end up opening JarURLConnections without first
// disabling caching. This effectively locks the file.
// JAXB does this and thus affects us pretty badly.
// Doesn't matter that this JAR doesn't exist - just as long as
// the URL is well-formed
if (!skipHack("org.apache.cxf.JDKBugHacks.defaultUsesCaches")) {
URL url = new URL("jar:file://dummy.jar!/");
URLConnection uConn =
new URLConnection(url) {
@Override
public void connect() throws IOException {
// NOOP
}
};
uConn.setDefaultUseCaches(false);
}
} catch (Throwable e) {
// ignore
}
} finally {
if (orig != null) {
orig.reset();
}
}
} catch (Throwable t) {
// ignore
}
}