@Override
public void initialize(URL location, ResourceBundle resources) {
model = new RNAXDModel();
setFileDependingButtonBindings();
bindMenuItemsToButtons();
model.setFileLoaded(false);
reloadItem.setSelected(false);
selectionFocusItem.setSelected(false);
initFileChooser();
setFileOpenedBinding();
}
private void selectionFocusBinding() {
if (selectionFocusItem.isSelected()) {
selectionModel.getSelectedItems().addListener(selectionFocusListener);
}
selectionFocusItem
.selectedProperty()
.addListener(
(observable, oldValue, newValue) -> {
if (newValue == oldValue) return;
if (newValue && !oldValue) {
selectionModel.getSelectedItems().addListener(selectionFocusListener);
} else {
selectionModel.getSelectedItems().removeListener(selectionFocusListener);
}
});
}
private void setFileDependingButtonBindings() {
// MenuItems
pyrpurItem.disableProperty().bind(model.fileLoadedProperty().not());
augcItem.disableProperty().bind(model.fileLoadedProperty().not());
meshItem.disableProperty().bind(model.fileLoadedProperty().not());
stickItem.disableProperty().bind(model.fileLoadedProperty().not());
ballItem.disableProperty().bind(model.fileLoadedProperty().not());
// Buttons on the side
colorPyrpur.disableProperty().bind(model.fileLoadedProperty().not());
colorAugc.disableProperty().bind(model.fileLoadedProperty().not());
structureMesh.disableProperty().bind(model.fileLoadedProperty().not());
structureStick.disableProperty().bind(model.fileLoadedProperty().not());
structureBall.disableProperty().bind(model.fileLoadedProperty().not());
playRotate.disableProperty().bind(model.fileLoadedProperty().not());
rotateLeft.disableProperty().bind(model.fileLoadedProperty().not());
rotateRight.disableProperty().bind(model.fileLoadedProperty().not());
zoomIn.disableProperty().bind(model.fileLoadedProperty().not());
zoomOut.disableProperty().bind(model.fileLoadedProperty().not());
centerObject.disableProperty().bind(model.fileLoadedProperty().not());
}
/** initialize tertiary structure view */
private void initTertiaryView() {
Group models3D = new Group();
rnaSequence3D = new RNASequence(model.getPdbfile());
if (tertiaryRoom == null) {
tertiaryRoom = new Room(models3D, 50, 50);
tertiaryRoom.rotateCamera(tertiaryRoom);
tertiaryRoom.scaleCamera(scene);
tertiaryRoom.alignToParent(pane3D);
tertiaryRoom.setPickOnBounds(false);
pane3D.getChildren().add(tertiaryRoom);
} else {
tertiaryRoom.setObject(rnaSequence3D);
}
if (reloadItem.isSelected()) loadOneModel(0);
if (!reloadItem.isSelected()) loadAllmodels();
((MeshModel) rnaSequence3D.getModels().get(1)).colorPyrPur();
rnaSequence3D.setSelectionModel(selectionModel);
tertiaryRoom.setCameraCenter(rnaSequence3D.computeCenter());
activateRightSideButtons();
}
private void bindMenuItemsToButtons() {
pyrpurItem.selectedProperty().bindBidirectional(colorPyrpur.selectedProperty());
augcItem.selectedProperty().bindBidirectional(colorAugc.selectedProperty());
meshItem.selectedProperty().bindBidirectional(structureMesh.selectedProperty());
stickItem.selectedProperty().bindBidirectional(structureStick.selectedProperty());
}