@Test(dataProvider = "tests")
public void testGetters(FMTest params) {
params.assertExpected(manager.getByCodec(params.codec));
params.assertExpected(manager.getByName(params.name));
params.assertExpected(manager.getByName(params.name.toLowerCase()));
params.assertExpected(manager.getByName(params.name.toUpperCase()));
Collection<FeatureManager.FeatureDescriptor> descriptors = manager.getByFeature(params.feature);
Assert.assertTrue(descriptors.size() > 0, "Look up by FeatureClass failed");
}
@Test(dataProvider = "tests")
public void testGetByFile(FMTest params) {
if (params.associatedFile != null) {
FeatureManager.FeatureDescriptor byFile = manager.getByFiletype(params.associatedFile);
Assert.assertNotNull(
byFile, "Couldn't find any type associated with file " + params.associatedFile);
params.assertExpected(byFile);
}
}
@DataProvider(name = "tests")
public Object[][] createTests() {
new FMTest(VariantContext.class, VCF3Codec.class, "VCF3", VCF3_FILE);
new FMTest(VariantContext.class, VCFCodec.class, "VCF", VCF4_FILE);
new FMTest(VariantContext.class, VCFCodec.class, "VCF", VCF4_FILE_GZ);
new FMTest(VariantContext.class, VCFCodec.class, "VCF", VCF4_FILE_BGZIP);
new FMTest(TableFeature.class, BedTableCodec.class, "bedtable", null);
return FMTest.getTests(FMTest.class);
}