public void run() {
List<UCFTestPathData> testData = m_testData.getTestPaths();
int len = testData.size();
// System.out.println("about to start "+ len + " users");
String docbase = m_testData.getDocbase();
int thinkTime = m_testData.getThinktime();
// generating specified number of user threads
WorkerThread[] workers = new WorkerThread[len];
// should new a thread to serve every user
for (int i = 0; i < len; i++) {
UCFTestPathData data = testData.get(i);
List<String> items = DocbaseHelper.buildWorkItems(data, docbase);
workers[i] = new WorkerThread(docbase, m_url, data, thinkTime, items);
}
int rampup = m_testData.getRmpup() * 1000;
// start workers
try {
for (int i = 0; i < len; i++) {
workers[i].start();
// add rampup time
Thread.sleep(rampup);
}
// wait for all works done
for (int i = 0; i < len; i++) workers[i].join();
} catch (InterruptedException ignored) {
}
}
/**
* Generates new simulated observations and adds them to the dialogue state. The method returns
* true when a new user input has been generated, and false otherwise.
*
* @return whether a user input has been generated @
*/
private boolean addNewObservations() {
List<String> newObsVars = new ArrayList<String>();
for (String var : simulatorState.getChanceNodeIds()) {
if (var.contains("^o'")) {
newObsVars.add(var);
}
}
if (!newObsVars.isEmpty()) {
MultivariateDistribution newObs = simulatorState.queryProb(newObsVars);
for (String newObsVar : newObsVars) {
newObs.modifyVariableId(newObsVar, newObsVar.replace("^o'", ""));
}
while (system.isPaused()) {
try {
Thread.sleep(50);
} catch (InterruptedException e) {
}
}
if (!newObs.getValues().isEmpty()) {
if (newObs.getVariables().contains(system.getSettings().userInput)) {
log.fine("Simulator output: " + newObs + "\n --------------");
system.addContent(newObs);
return true;
} else {
log.fine("Contextual variables: " + newObs);
system.addContent(newObs);
}
}
}
return false;
}
public void run() {
while (!_closed) {
try {
updateAll();
long now = System.currentTimeMillis();
if (inetAddrCacheMS > 0 && _nextResolveTime < now) {
_nextResolveTime = now + inetAddrCacheMS;
for (Node node : _all) {
node.updateAddr();
}
}
// force check on master
// otherwise master change may go unnoticed for a while if no write concern
_mongo.getConnector().checkMaster(true, false);
} catch (Exception e) {
_logger.log(Level.WARNING, "couldn't do update pass", e);
}
try {
Thread.sleep(updaterIntervalMS);
} catch (InterruptedException ie) {
}
}
}
private void rest() {
try {
Thread.sleep(100); // do nothing for 1000 miliseconds (1 second)
} catch (InterruptedException e) {
e.printStackTrace();
}
}
public void run() {
int i;
String cmdToLookFor = getServerProperty("pidHint");
if (cmdToLookFor == null) {
StringBuffer buf = new StringBuffer();
for (i = 0; i < mExecArgs.length; i++) {
if (i > 0) {
buf.append(" ");
}
buf.append(mExecArgs[i]);
}
cmdToLookFor = buf.toString();
}
mLogger.finer("Looking for pid for command: " + cmdToLookFor);
i = 0;
do {
try {
Thread.sleep(1000);
} catch (InterruptedException ie) {
}
mPid = UnixStdlib.getProcessID(cmdToLookFor);
} while (mPid == 0 && ++i < 300); // up to 5 minutes
if (mPid == 0) {
mLogger.warning("Giving up on trying to identify pid");
} else {
mLogger.finer("Serverpid server=" + mName + " pid=" + mPid);
}
}
/**
* Creates a new DAG-based graph layout for the given Bayesian Network. The nodes are identified
* by a string label, and the edges by a number.
*
* @param bn the Bayesian network
* @return the generated layout
*/
private Layout<String, Integer> getGraphLayout(DialogueState ds, boolean showParameters) {
Forest<String, Integer> f = new DelegateForest<String, Integer>();
// adding the nodes and edges
int counter = 0;
try {
for (BNode node : new ArrayList<BNode>(ds.getNodes())) {
if (showParameters || !ds.getParameterIds().contains(node.getId())) {
String nodeName = getVerticeId(node);
f.addVertex(nodeName);
for (BNode inputNode : new ArrayList<BNode>(node.getInputNodes())) {
if (ds.getNode(inputNode.getId()) != null) {
String inputNodeName = getVerticeId(inputNode);
f.addEdge(counter, inputNodeName, nodeName);
counter++;
}
}
}
}
CustomLayoutTransformer transformer = new CustomLayoutTransformer(ds);
StaticLayout<String, Integer> layout = new StaticLayout<String, Integer>(f, transformer);
layout.setSize(new Dimension(600, 600));
return layout;
} catch (ConcurrentModificationException | NullPointerException e) {
try {
Thread.sleep(50);
} catch (InterruptedException e1) {
}
return getGraphLayout(ds, showParameters);
}
}
/**
* Execute Task locally and wait
*
* @param cmd command
* @return execution info
*/
public String executeLocal(String cmd) {
log.config(cmd);
if (m_task != null && m_task.isAlive()) m_task.interrupt();
m_task = new Task(cmd);
m_task.start();
StringBuffer sb = new StringBuffer();
while (true) {
// Give it a bit of time
try {
Thread.sleep(500);
} catch (InterruptedException ioe) {
log.log(Level.SEVERE, cmd, ioe);
}
// Info to user
sb.append(m_task.getOut())
.append("\n-----------\n")
.append(m_task.getErr())
.append("\n-----------");
// Are we done?
if (!m_task.isAlive()) break;
}
log.config("done");
return sb.toString();
} // executeLocal
/**
* The run method lives for the life of the JobTracker, and removes Jobs that are not still
* running, but which finished a long time ago.
*/
public void run() {
while (shouldRun) {
try {
Thread.sleep(RETIRE_JOB_CHECK_INTERVAL);
} catch (InterruptedException ie) {
}
synchronized (jobs) {
synchronized (jobInitQueue) {
synchronized (jobsByArrival) {
for (Iterator it = jobs.keySet().iterator(); it.hasNext(); ) {
String jobid = (String) it.next();
JobInProgress job = (JobInProgress) jobs.get(jobid);
if (job.getStatus().getRunState() != JobStatus.RUNNING
&& job.getStatus().getRunState() != JobStatus.PREP
&& (job.getFinishTime() + RETIRE_JOB_INTERVAL < System.currentTimeMillis())) {
it.remove();
jobInitQueue.remove(job);
jobsByArrival.remove(job);
}
}
}
}
}
}
}
protected void runEcho() {
Scanner socketScanner = null;
String newLine;
try {
socketScanner = new Scanner(socket.getInputStream());
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
while (true) {
try {
Thread.sleep(CLERK_DELAY_MS);
} catch (InterruptedException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
if (socket.isClosed()) return;
if (socketScanner.hasNextLine()) {
newLine = socketScanner.nextLine() + END_OF_LINE;
System.out.println("echoing: " + newLine);
try {
socket.getOutputStream().write(newLine.getBytes(encoding));
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
}
}
@Override
@SuppressWarnings("SleepWhileHoldingLock")
public void run() {
try {
// initialize the statusbar
status.removeAll();
JProgressBar progress = new JProgressBar();
progress.setMinimum(0);
progress.setMaximum(doc.getLength());
status.add(progress);
status.revalidate();
// start writing
Writer out = new FileWriter(f);
Segment text = new Segment();
text.setPartialReturn(true);
int charsLeft = doc.getLength();
int offset = 0;
while (charsLeft > 0) {
doc.getText(offset, Math.min(4096, charsLeft), text);
out.write(text.array, text.offset, text.count);
charsLeft -= text.count;
offset += text.count;
progress.setValue(offset);
try {
Thread.sleep(10);
} catch (InterruptedException e) {
Logger.getLogger(FileSaver.class.getName()).log(Level.SEVERE, null, e);
}
}
out.flush();
out.close();
} catch (IOException e) {
final String msg = e.getMessage();
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
getFrame(),
"Could not save file: " + msg,
"Error saving file",
JOptionPane.ERROR_MESSAGE);
}
});
} catch (BadLocationException e) {
System.err.println(e.getMessage());
}
// we are done... get rid of progressbar
status.removeAll();
status.revalidate();
}
/**
* The run method lives for the life of the JobTracker, and removes TaskTrackers that have not
* checked in for some time.
*/
public void run() {
while (shouldRun) {
//
// Thread runs periodically to check whether trackers should be expired.
// The sleep interval must be no more than half the maximum expiry time
// for a task tracker.
//
try {
Thread.sleep(TASKTRACKER_EXPIRY_INTERVAL / 3);
} catch (InterruptedException ie) {
}
//
// Loop through all expired items in the queue
//
synchronized (taskTrackers) {
synchronized (trackerExpiryQueue) {
long now = System.currentTimeMillis();
TaskTrackerStatus leastRecent = null;
while ((trackerExpiryQueue.size() > 0)
&& ((leastRecent = (TaskTrackerStatus) trackerExpiryQueue.first()) != null)
&& (now - leastRecent.getLastSeen() > TASKTRACKER_EXPIRY_INTERVAL)) {
// Remove profile from head of queue
trackerExpiryQueue.remove(leastRecent);
String trackerName = leastRecent.getTrackerName();
// Figure out if last-seen time should be updated, or if tracker is dead
TaskTrackerStatus newProfile =
(TaskTrackerStatus) taskTrackers.get(leastRecent.getTrackerName());
// Items might leave the taskTracker set through other means; the
// status stored in 'taskTrackers' might be null, which means the
// tracker has already been destroyed.
if (newProfile != null) {
if (now - newProfile.getLastSeen() > TASKTRACKER_EXPIRY_INTERVAL) {
// Remove completely
updateTaskTrackerStatus(trackerName, null);
lostTaskTracker(leastRecent.getTrackerName());
} else {
// Update time by inserting latest profile
trackerExpiryQueue.add(newProfile);
}
}
}
}
}
}
}
public static void startTracker(Configuration conf) throws IOException {
if (tracker != null) throw new IOException("JobTracker already running.");
while (true) {
try {
tracker = new JobTracker(conf);
break;
} catch (IOException e) {
LOG.log(Level.WARNING, "Starting tracker", e);
}
try {
Thread.sleep(1000);
} catch (InterruptedException e) {
}
}
tracker.offerService();
}
public void run() {
if (infosMotCles == null && infosSociete == null && maBD == null) return;
String pageCourante = url.substring(infosSociete.get("url").toString().length(), url.length());
try {
// Si on a pas vu la page -> On fouille la page
if (maBD.estDejaVu(infosSociete.get("url").toString(), pageCourante).equalsIgnoreCase("0")) {
logger.log(Level.INFO, "Parsing - {0}", url);
Document doc = Jsoup.connect(url).get();
// Si c'est une page 404 on skip
if (doc.title().indexOf("404") != -1) return;
parser(doc, pageCourante);
if (infosSociete.get("url").toString().equalsIgnoreCase(url)) {
// On regarde si il y a des page en plus
for (String link : getLinks(doc)) {
pageCourante =
link.substring(infosSociete.get("url").toString().length(), link.length());
if (maBD.estDejaVu(infosSociete.get("url").toString(), pageCourante)
.equalsIgnoreCase("0")) {
// On lance un nouveau thread pour cette page
// System.out.println("!"+pageCourante+" a plusieurs pages");
new Thread(new Parser(infosSociete, infosMotCles, maBD, link, logger)).start();
try {
Thread.sleep(3500); // On wait 3.5 sec
} catch (Exception e) {
}
}
}
}
}
} catch (Exception ex) {
logger.log(Level.WARNING, "Parsing error - {0}", url + " - " + ex.toString());
} finally {
return;
}
}
public static void main(String args[]) throws Exception {
List<ServerAddress> addrs = new LinkedList<ServerAddress>();
addrs.add(new ServerAddress("127.0.0.1", 27017));
addrs.add(new ServerAddress("127.0.0.1", 27018));
Mongo m = new Mongo(addrs);
ReplicaSetStatus status = new ReplicaSetStatus(m, addrs);
System.out.println(status.ensureMaster()._addr);
while (true) {
System.out.println(status.ready());
if (status.ready()) {
status.printStatus();
System.out.println(
"master: " + status.getMaster() + "\t secondary: " + status.getASecondary());
}
System.out.println("-----------------------");
Thread.sleep(5000);
}
}
// ----This function getting nodes from mongo's collection tree_nodes----
// ---------the function insert nodes to neo4j and deletes it from mongo-----------
// ----------------------------------------------------------------------------------------
public void update_tree() {
while (true) {
DBObject obj = new BasicDBObject();
obj.put("in_process", 0); // when other thread processing, 'in_process'=1
DBCursor cursor = this.colltree.find(obj); // find only documents not in use of other thread
// log4j.info(cursor.count() + " documents to process in collection tree nodes");
if (!cursor.hasNext()) { // no documents to process
try {
log4j.info("there is no nodes to process at the moment, going to sleep for 10 seconds");
Thread.currentThread();
Thread.sleep(1000 * 10);
log4j.info("update_tree woke up, continues");
} catch (InterruptedException e) {
log4j.error("InterruptedException caught, at update_all_tweets");
e.printStackTrace();
log4j.error(e);
}
} else // there are documents to process
{
try {
while (cursor.hasNext()) {
DBObject tr = cursor.next();
try {
String parent = tr.get("parent").toString();
String[] sons = tr.get("son").toString().split(","); // make array of sons
neo4j.addNode(
parent, sons, this.log4j); // create nodes and relationships if not exists
this.colltree.remove(tr); // remove document from collection
} catch (ConcurrentModificationException e) {
// log4j.error(e);
log4j.warn(e);
}
}
} catch (MongoException e) {
log4j.error(e);
}
}
}
}
public CustomLayoutTransformer(DialogueState network) {
positions = new HashMap<String, Point2D>();
Point current = new Point(0, 0);
// trying to avoid nasty concurrent modifications
List<String> allNodes = new ArrayList<String>();
List<String> ruleNodes = new ArrayList<String>();
for (int i = 0; i < 3; i++) {
try {
allNodes.addAll(network.getNodeIds());
ruleNodes.addAll(network.getNodeIds(AnchoredRule.class));
break;
} catch (ConcurrentModificationException | NullPointerException e) {
try {
Thread.sleep(50);
} catch (InterruptedException e1) {
}
}
}
for (String node : allNodes) {
if (!node.contains("'") && !node.contains("=") && !ruleNodes.contains(node)) {
positions.put(node, current);
current = incrementPoint(current);
}
}
current = new Point(current.x + 200, 0);
for (String node : ruleNodes) {
positions.put(node, current);
current = incrementPoint(current);
}
current = new Point(current.x + 200, 0);
for (String node : allNodes) {
if (!positions.containsKey(node)) {
positions.put(node, current);
current = incrementPoint(current);
}
}
}
@Override
public void run() {
try {
socketInput =
new BufferedReader(
new InputStreamReader(
connectionSocket.getInputStream())); // get the inputstream from other peer
pieceReader =
connectionSocket
.getInputStream(); // return an input stream for reading bytes from this socket.
socketOutput =
new DataOutputStream(
connectionSocket.getOutputStream()); // get the outputstream to others
// return an output stream for writing bytes to this socket.
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
// TCP handshake
if (OtherPeerID != -1) {
try {
socketOutput.writeBytes(handshakeMsg);
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
checkHandShakeMsg = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
checkHandShakeHeader = checkHandShakeMsg.substring(0, 18);
OtherPeerID = Integer.parseInt(checkHandShakeMsg.substring(28, 32));
} else // ackhandshake
{
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
checkHandShakeMsg = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
checkHandShakeHeader = checkHandShakeMsg.substring(0, 18);
OtherPeerID = Integer.parseInt(checkHandShakeMsg.substring(28, 32));
if (checkHandShakeHeader.equals(handshakeheader)) {
try { // if it is the right neighbour, write log that peer1 is connected from peer2
peerProcess.logfile.write(LogWriter.logmsg(1, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
socketOutput.writeBytes(handshakeMsg);
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
}
}
// start transferring
try {
while (quited == false
&& (peerProcess.Peers.elementAt(peerProcess.myPeerID % 1000 - 1).obtainAll() == false
|| peerProcess.Peers.elementAt(OtherPeerID % 1000 - 1).obtainAll() == false)) {
try {
socketOutput.writeBytes(peerNotExitMsg);
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " sent not quit message to peer "
+ OtherPeerID
+ ".");
} catch (Exception e) {
}
try {
while (socketInput.ready() == false) {
//
}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
// get the corresponding message length, message type and message payload
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 8) {
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " received quit message from peer "
+ OtherPeerID
+ ".");
quited = true;
break;
} else if (msgType != 9) {
System.out.println(
"Received message type " + msgType + ", expecting quit/not quit message.");
} else {
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " received not quit message from peer "
+ OtherPeerID
+ ".");
}
// bitField exchange
try {
mybitfield =
peerProcess.Peers.elementAt(peerProcess.myPeerID % 1000 - 1).obtainBitField();
haveMsg = mybitfield.length() + "#" + 4 + "#" + mybitfield + "\n";
socketOutput.writeBytes(haveMsg);
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " sent bitfield message to peer "
+ OtherPeerID
+ ".");
} catch (Exception e) {
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 4) {
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " received bitField message from peer "
+ OtherPeerID
+ ".");
peerProcess.Peers.elementAt(OtherPeerID % 1000 - 1).setTheBitField(msgPayload);
} else if (msgType == 8) {
System.out.println(
"Peer "
+ peerProcess.myPeerID
+ " received quit message from peer "
+ OtherPeerID
+ ".");
quited = true;
break;
} else {
System.out.println(" received message type " + msgType + ", expecting bitField message.");
}
if (peerProcess.choked[OtherPeerID % 1000 - 1] == false) {
try {
socketOutput.writeBytes(unchokedMsg);
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
mybitfield =
peerProcess.Peers.elementAt(peerProcess.myPeerID % 1000 - 1).obtainBitField();
haveMsg = mybitfield.length() + "#" + 4 + "#" + mybitfield + "\n";
try {
socketOutput.writeBytes(haveMsg);
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 1) {
try {
peerProcess.logfile.write(LogWriter.logmsg(3, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 4) {
peerProcess.Peers.elementAt(OtherPeerID % 1000 - 1).setTheBitField(msgPayload);
interestedPieceID =
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.obtainInterestedPiece(OtherPeerID);
try {
if (interestedPieceID != -1)
peerProcess.logfile.write(
LogWriter.logmsg(5, peerProcess.myPeerID, OtherPeerID, interestedPieceID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
if (interestedPieceID == -1) {
try {
socketOutput.writeBytes(1 + "#" + 3 + "#" + "-1\n");
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 2) {
try {
peerProcess.logfile.write(
LogWriter.logmsg(6, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
byte[] piececontent = peerProcess.obtainPiece(Integer.parseInt(msgPayload));
piecemsg = msgPayload + "#" + 7 + "#" + piececontent.length + "\n";
try {
socketOutput.writeBytes(piecemsg);
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 10) {
socketOutput.write(piececontent);
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType != 10) {
System.out.println(
"received message type "
+ msgType
+ ", expecting channel clear message.");
}
continue;
} else {
System.out.println(
"received message type "
+ msgType
+ ", expecting channel clear message.");
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
} else if (msgType == 3) {
try {
peerProcess.logfile.write(
LogWriter.logmsg(7, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
}
} else {
try {
socketOutput.writeBytes(1 + "#" + 2 + "#" + interestedPieceID + "\n");
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 2) {
byte[] piececontent = peerProcess.obtainPiece(Integer.parseInt(msgPayload));
piecemsg = msgPayload + "#" + 7 + "#" + piececontent.length + "\n";
try {
try {
peerProcess.logfile.write(
LogWriter.logmsg(6, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
socketOutput.writeBytes(piecemsg);
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
int indexFromOther = msgLen;
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
int loadsize = Integer.parseInt(msgPayload);
byte[] mspiececon = new byte[loadsize];
if (msgType == 7) {
if (peerProcess.myPeerID < OtherPeerID) {
socketOutput.writeBytes(channelClearMsg);
while (pieceReader.available() <= 0) {}
int totallen = 0;
byte[] c = new byte[1];
while (totallen < loadsize) {
try {
pieceReader.read(c);
} catch (Exception e) {
}
mspiececon[totallen] = c[0];
totallen++;
}
socketOutput.write(piececontent);
try {
peerProcess.writebackPiece(indexFromOther, mspiececon);
peerProcess.logfile.write(
LogWriter.logmsg(
8,
peerProcess.myPeerID,
OtherPeerID,
interestedPieceID,
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.hasHowManyPieces()));
if (peerProcess
.Peers
.elementAt(peerProcess.myPeerID % peerIDBase - 1)
.obtainAll()
== true) {
try {
peerProcess.logfile.write(LogWriter.logmsg(9, peerProcess.myPeerID));
} catch (Exception e) {
}
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName())
.log(Level.SEVERE, null, ex);
}
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType != 10) {
System.out.println(
"Expecting channel clear message, received message type " + msgType);
}
continue;
} else {
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 10) {
socketOutput.write(piececontent);
while (pieceReader.available() <= 0) {}
int totallen = 0;
byte[] c = new byte[1];
while (totallen < loadsize) {
try {
pieceReader.read(c);
} catch (Exception e) {
}
mspiececon[totallen] = c[0];
totallen++;
}
socketOutput.writeBytes(channelClearMsg);
try {
peerProcess.writebackPiece(indexFromOther, mspiececon);
peerProcess.logfile.write(
LogWriter.logmsg(
8,
peerProcess.myPeerID,
OtherPeerID,
interestedPieceID,
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.hasHowManyPieces()));
if (peerProcess
.Peers
.elementAt(peerProcess.myPeerID % peerIDBase - 1)
.obtainAll()
== true) {
try {
peerProcess.logfile.write(
LogWriter.logmsg(9, peerProcess.myPeerID));
} catch (Exception e) {
}
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName())
.log(Level.SEVERE, null, ex);
}
continue;
} else {
System.out.println(
"Expecting channel clear message, received message type " + msgType);
}
}
} else {
System.out.println(
"Expecting piecemessage, received message type " + msgType);
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
} else if (msgType == 3) {
try {
peerProcess.logfile.write(
LogWriter.logmsg(7, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
int indexFromOther = msgLen;
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
int loadsize = Integer.parseInt(msgPayload);
byte[] mspiececon = new byte[loadsize];
if (msgType == 7) {
socketOutput.writeBytes(channelClearMsg);
while (pieceReader.available() <= 0) {}
int totallen = 0;
byte[] c = new byte[1];
while (totallen < loadsize) {
try {
pieceReader.read(c);
} catch (Exception e) {
}
mspiececon[totallen] = c[0];
totallen++;
}
socketOutput.writeBytes(channelClearMsg);
try {
peerProcess.writebackPiece(indexFromOther, mspiececon);
peerProcess.logfile.write(
LogWriter.logmsg(
8,
peerProcess.myPeerID,
OtherPeerID,
interestedPieceID,
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.hasHowManyPieces()));
if (peerProcess
.Peers
.elementAt(peerProcess.myPeerID % peerIDBase - 1)
.obtainAll()
== true) {
try {
peerProcess.logfile.write(LogWriter.logmsg(9, peerProcess.myPeerID));
} catch (Exception e) {
}
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
continue;
} else {
System.out.println(
"Expecting piece data, received message type" + msgType + ".");
}
}
}
}
} else if (msgType == 0) {
try {
peerProcess.logfile.write(LogWriter.logmsg(4, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 2) {
byte[] piececontent = peerProcess.obtainPiece(Integer.parseInt(msgPayload));
piecemsg = msgPayload + "#" + 7 + "#" + piececontent.length + "\n";
try {
socketOutput.writeBytes(piecemsg);
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 10) {
socketOutput.write(piececontent);
while (socketInput.ready() == false) {}
try {
MsgFromOtherPeer = socketInput.readLine();
} catch (Exception e) {
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType != 10) {
System.out.println(
"Expecting channel clear message, received message type " + msgType);
}
continue;
} else {
System.out.println(
"Expecting channel clear message, received message type " + msgType);
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
peerProcess.logfile.write(LogWriter.logmsg(6, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
} else if (msgType == 3) {
try {
peerProcess.logfile.write(LogWriter.logmsg(7, peerProcess.myPeerID, OtherPeerID));
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
}
} else {
continue;
}
} else {
try {
socketOutput.writeBytes(chokedMsg);
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 0) {
try {
peerProcess.logfile.write(LogWriter.logmsg(4, peerProcess.myPeerID, OtherPeerID));
} catch (Exception e) {
}
continue;
} else if (msgType == 1) {
try {
peerProcess.logfile.write(LogWriter.logmsg(3, peerProcess.myPeerID, OtherPeerID));
} catch (Exception e) {
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
if (msgType == 4) {
peerProcess.Peers.elementAt(OtherPeerID % 1000 - 1).setTheBitField(msgPayload);
interestedPieceID =
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.obtainInterestedPiece(OtherPeerID);
try {
if (interestedPieceID != -1)
peerProcess.logfile.write(
LogWriter.logmsg(5, peerProcess.myPeerID, OtherPeerID, interestedPieceID));
} catch (Exception e) {
}
if (interestedPieceID == -1) {
try {
socketOutput.writeBytes(1 + "#" + 3 + "#" + "-1\n");
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
} else {
try {
socketOutput.writeBytes(1 + "#" + 2 + "#" + interestedPieceID + "\n");
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
try {
while (socketInput.ready() == false) {}
} catch (Exception e) {
}
try {
MsgFromOtherPeer = socketInput.readLine() + "";
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
RecvdMsg = MsgFromOtherPeer.split("#");
msgLen = Integer.parseInt(RecvdMsg[0]);
int indexFromOther = msgLen;
msgType = Integer.parseInt(RecvdMsg[1]);
msgPayload = RecvdMsg[2];
int loadsize = Integer.parseInt(msgPayload);
byte[] mspiececon = new byte[loadsize];
if (msgType == 7) {
socketOutput.writeBytes(channelClearMsg);
while (pieceReader.available() <= 0) {}
int totallen = 0;
byte[] c = new byte[1];
while (totallen < loadsize) {
try {
pieceReader.read(c);
} catch (Exception e) {
}
mspiececon[totallen] = c[0];
totallen++;
}
socketOutput.writeBytes(channelClearMsg);
try {
peerProcess.writebackPiece(indexFromOther, mspiececon);
peerProcess.logfile.write(
LogWriter.logmsg(
8,
peerProcess.myPeerID,
OtherPeerID,
interestedPieceID,
peerProcess
.Peers
.elementAt(peerProcess.myPeerID % 1000 - 1)
.hasHowManyPieces()));
if (peerProcess
.Peers
.elementAt(peerProcess.myPeerID % peerIDBase - 1)
.obtainAll()
== true) {
try {
peerProcess.logfile.write(LogWriter.logmsg(9, peerProcess.myPeerID));
} catch (Exception e) {
}
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
continue;
} else {
System.out.println("received msg type " + msgType + ", expecting piece data.");
}
}
} else {
System.out.println("received msg type " + msgType + ", expecting have msg.");
}
} else {
System.out.println("received msg type " + msgType + ", expecting choke/unchoke msg.");
}
}
}
} catch (Exception ite) {
}
if (quited == false) {
try {
socketOutput.writeBytes(peerExitMsg);
System.out.println(
"Peer " + peerProcess.myPeerID + " sent quit message to peer " + OtherPeerID + ".");
try {
Thread.sleep(100);
} catch (Exception e) {
}
} catch (IOException ex) {
Logger.getLogger(SocketThread.class.getName()).log(Level.SEVERE, null, ex);
}
}
System.out.println(
"The socket between peer"
+ peerProcess.myPeerID
+ "and peer "
+ OtherPeerID
+ " will disconnect now.\n");
peerProcess.Peers.elementAt(OtherPeerID % 1000 - 1).setHasAllPieces();
peerProcess.Peers.elementAt(peerProcess.myPeerID % 1000 - 1).setHasAllPieces();
}
public void runExample(String deviceName) {
info("Analog voice resource: " + deviceName);
try {
// Open the device. All access to dialogic hardware is done through
// "device handles".
info("Opening " + deviceName);
int dev = dx.open(deviceName, 0);
// Make sure that the device is "onhook" for at least 2 seconds. It
// is always possible that the line is off hook right now. Never assume
// that the device is in any particular state. Closing a device does
// not reset it in any way.
info("Setting ONHOOK to make sure no calls are active.");
dx.sethook(dev, dx.DX_ONHOOK, dx.EV_SYNC);
try {
Thread.sleep(2000);
} catch (Exception ignore) {
}
// Each device name "dxxxB1C1" is actually two devices in one.
// 1) A voice resource. This resource does the dialing, DTMF detection,
// etc etc etc. While it is named "dxxxB1C1", it's better to think
// of it as a virtual resource. It can be used in conjunction with
// any "real" interface.
// 2) A real interface - in analog loop-start cases, this is an actual
// RJ-11 port. While we commonly use the "matching" voice and analog
// pairs together, that is not actually forced.
// Just like we won't assume that the device is ONHOOK right now, we
// won't assume that the voice resource and the analog network resource
// can "hear" eachother. Make them listen to eachother now
info("Routing analog and voice resources to eachother.");
dx.listen(dev, ag.getxmitslot(dev));
ag.listen(dev, dx.getxmitslot(dev));
// Wait for the line to ring once, then automatically go OFFHOOK.
info("Waiting for a call to come in.");
dx.wtring(dev, 1, dx.DX_OFFHOOK, -1);
// DV_TPT tells the API "how, when and why" a certain operation
// should terminate. In this case, we're going to give two
// termination clauses.
DV_TPT tpt[] = DV_TPT.newArray(2);
// 1) Stop recording if 60 seconds has elapsed. I like to always
// put in MAXTIME conditions because you can never trust that
// the person is going to stay on the line and press they key.
// If they hang up, the API will never "hear" a keypress, and
// will go on, and on, and on, recording whatever it hears.
tpt[0].tp_type = dx.IO_CONT;
tpt[0].tp_termno = dx.DX_MAXTIME;
tpt[0].tp_length = 600;
tpt[0].tp_flags = dx.TF_MAXTIME;
// 2) Stop recording when we hear 1 DTMF key. This is the user's
// method of stopping the recording.
tpt[1].tp_type = dx.IO_EOT;
tpt[1].tp_termno = dx.DX_MAXDTMF;
tpt[1].tp_length = 1;
tpt[1].tp_flags = dx.TF_MAXDTMF;
// Start the recording. RM_TONE tells Dialogic to "beep" before
// the recording starts - a convenient way to let the user know
// that something usefull is going on.
info("Recording...");
dx.recf(dev, "Example2.vox", tpt, dx.RM_TONE | dx.EV_SYNC);
// The recording has finished, but we don't know _why_ it finished.
// ATDX_TERMMSK will tell us the "cause of termination". Note that
// several termination conditions can be true at the same time, so
// we have to check for bit-masks, not equality.
long termmsk = dx.ATDX_TERMMSK(dev);
// The function "completed normally".
if ((termmsk & dx.TM_NORMTERM) == dx.TM_NORMTERM) {
info("dx.TM_NORMTERM");
}
// They user pressed a key.
if ((termmsk & dx.TM_MAXDTMF) == dx.TM_MAXDTMF) {
info("dx.TM_MAXDTMF");
}
// The maximum amount of time as elapsed.
if ((termmsk & dx.TM_MAXTIME) == dx.TM_MAXTIME) {
info("dx.TM_MAXTIME");
}
// This happens if another thread has called dx.stopch() on the
// device handle that was doing the recording.
if ((termmsk & dx.TM_USRSTOP) == dx.TM_USRSTOP) {
info("dx.TM_USRSTOP");
}
// An error occurred.
if ((termmsk & dx.TM_ERROR) == dx.TM_ERROR) {
info("dx.TM_ERROR");
}
// The first of the termination types should not be applicable in
// this condition, but are listed for completeness.
if ((termmsk & dx.TM_MAXSIL) == dx.TM_MAXSIL) {
info("dx.TM_MAXSIL");
}
if ((termmsk & dx.TM_MAXNOSIL) == dx.TM_MAXNOSIL) {
info("dx.TM_MAXNOSIL");
}
if ((termmsk & dx.TM_LCOFF) == dx.TM_LCOFF) {
info("dx.TM_LCOFF");
}
if ((termmsk & dx.TM_IDDTIME) == dx.TM_IDDTIME) {
info("dx.TM_IDDTIME");
}
if ((termmsk & dx.TM_DIGIT) == dx.TM_DIGIT) {
info("dx.TM_DIGIT");
}
if ((termmsk & dx.TM_PATTERN) == dx.TM_PATTERN) {
info("dx.TM_PATTERN");
}
if ((termmsk & dx.TM_EOD) == dx.TM_EOD) {
info("dx.TM_EOD");
}
if ((termmsk & dx.TM_TONE) == dx.TM_TONE) {
info("dx.TM_TONE");
}
// Only do the playback if the termination condition was DTMF.
// Otherwise we have to assume that the caller has hung up.
if ((termmsk & dx.TM_MAXDTMF) == dx.TM_MAXDTMF) {
// When a user hits a DTMF key, only the fact that the key
// was pressed is reported. *What* key is actually in the
// voice resources digit buffer. In this example, we don't
// care _what_ key was pressed. However, before we can start
// another I/O operation that has a DTMF termination clause,
// we have to clear the buffer. Otherwise, it will terminate
// *right away*.
dx.clrdigbuf(dev);
// Play back the same file. Since recf() uses the default
// VOX file format, we do not need to specify a DX_XPB
// structure.
//
// We will also give the user the option to terminate the
// playback early by again hitting a DTMF key.
tpt = DV_TPT.newArray(1);
tpt[0].tp_type = dx.IO_EOT;
tpt[0].tp_termno = dx.DX_MAXDTMF;
tpt[0].tp_length = 1;
tpt[0].tp_flags = dx.TF_MAXDTMF;
info("Playing...");
dx.playvox(dev, "Example2.vox", tpt, null, dx.EV_SYNC);
// And again, check the reason for function termination.
termmsk = dx.ATDX_TERMMSK(dev);
// The function "completed normally".
if ((termmsk & dx.TM_NORMTERM) == dx.TM_NORMTERM) {
info("dx.TM_NORMTERM");
}
// EOD means "end of data". For playvox(), that means
// "the whole file was played".
if ((termmsk & dx.TM_EOD) == dx.TM_EOD) {
info("dx.TM_EOD");
}
// They user pressed a key.
if ((termmsk & dx.TM_MAXDTMF) == dx.TM_MAXDTMF) {
info("dx.TM_MAXDTMF");
}
// This happens if another thread has called dx.stopch() on the
// device handle that was doing the recording.
if ((termmsk & dx.TM_USRSTOP) == dx.TM_USRSTOP) {
info("dx.TM_USRSTOP");
}
// An error occurred.
if ((termmsk & dx.TM_ERROR) == dx.TM_ERROR) {
info("dx.TM_ERROR");
}
// The first of the termination types should not be applicable in
// this condition, but are listed for completeness.
if ((termmsk & dx.TM_MAXTIME) == dx.TM_MAXTIME) {
info("dx.TM_MAXTIME");
}
if ((termmsk & dx.TM_MAXSIL) == dx.TM_MAXSIL) {
info("dx.TM_MAXSIL");
}
if ((termmsk & dx.TM_MAXNOSIL) == dx.TM_MAXNOSIL) {
info("dx.TM_MAXNOSIL");
}
if ((termmsk & dx.TM_LCOFF) == dx.TM_LCOFF) {
info("dx.TM_LCOFF");
}
if ((termmsk & dx.TM_IDDTIME) == dx.TM_IDDTIME) {
info("dx.TM_IDDTIME");
}
if ((termmsk & dx.TM_DIGIT) == dx.TM_DIGIT) {
info("dx.TM_DIGIT");
}
if ((termmsk & dx.TM_PATTERN) == dx.TM_PATTERN) {
info("dx.TM_PATTERN");
}
if ((termmsk & dx.TM_TONE) == dx.TM_TONE) {
info("dx.TM_TONE");
}
}
// Whether or not the call was connected or not, we have to hang up manually.
// Also, guarantee that we _stay_ hung up for at least 2 seconds. That way,
// if some other code goes OFFHOOK, we don't accidentally hook flash.
info("Hanging up");
dx.sethook(dev, dx.DX_ONHOOK, dx.EV_SYNC);
try {
Thread.sleep(2000);
} catch (Exception ignore) {
}
// We are done with the device, so close it.
info("Closing");
dx.close(dev);
info("Done");
} catch (JVRException e) {
logger.throwing(Example1.class.getName(), "runExample", e);
}
}
public boolean execute() {
if (CDState.getCycle() % period != 0) return false;
MycoCast mycocast = (MycoCast) Network.get(0).getProtocol(mycocastPid);
int bio = mycocast.countBiomass();
int ext = mycocast.countExtending();
int bra = mycocast.countBranching();
int imm = mycocast.countImmobile();
// Update vertices
Set<MycoNode> activeNodes = new HashSet<MycoNode>();
for (int i = 0; i < Network.size(); i++) {
MycoNode n = (MycoNode) Network.get(i);
activeNodes.add(n);
HyphaData data = n.getHyphaData();
// if (data.isBiomass()) { continue; }
if (graph.containsVertex(n)) {
graph.removeVertex(n);
}
if (!graph.containsVertex(n)) {
graph.addVertex(n);
}
}
Set<MycoNode> jungNodes = new HashSet<MycoNode>(graph.getVertices());
jungNodes.removeAll(activeNodes);
for (MycoNode n : jungNodes) {
graph.removeVertex(n);
}
// Update edges
for (int i = 0; i < Network.size(); i++) {
MycoNode n = (MycoNode) Network.get(i);
HyphaData data = n.getHyphaData();
HyphaLink link = n.getHyphaLink();
synchronized (graph) {
// We now add in all links and tune out display in Visualizer
java.util.List<MycoNode> neighbors = (java.util.List<MycoNode>) link.getNeighbors();
//// Adding only links to hypha thins out links to biomass
// (java.util.List<MycoNode>) link.getHyphae();
Collection<MycoNode> jungNeighbors = graph.getNeighbors(n);
// Remove edges from Jung graph that are not in peersim graph
for (MycoNode o : jungNeighbors) {
if (!neighbors.contains(o)) {
MycoEdge edge = graph.findEdge(n, o);
while (edge != null) {
graph.removeEdge(edge);
edge = graph.findEdge(n, o);
}
}
}
// Add missing edges to Jung graph that are in peersim graph
for (MycoNode o : neighbors) {
if (graph.findEdge(n, o) == null) {
MycoEdge edge = new MycoEdge();
graph.addEdge(edge, n, o, EdgeType.DIRECTED);
}
}
}
// log.finest("VERTICES: " + graph.getVertices());
// log.finest("EDGES: " + graph.getEdges());
}
for (ChangeListener cl : changeListeners) {
cl.stateChanged(new ChangeEvent(graph));
}
if (walking) {
try {
Thread.sleep(walkDelay);
} catch (InterruptedException e) {
}
stepBlocked = false;
}
try {
while (stepBlocked && !noBlock) {
synchronized (JungGraphObserver.class) {
JungGraphObserver.class.wait();
}
}
} catch (InterruptedException e) {
stepBlocked = true;
}
stepBlocked = true;
// System.out.println(graph.toString());
return false;
}
// ----This function gets the raw json from raw_data collection----
// ---------the function separate the tweets and inserts it to all_tweets collection and calling
// all other data processing methods-----------
// ----------------------------------------------------------------------------------------
public void update_all_tweets(final double num_of_slots, final double max_time_frame_hours)
throws MongoException, ParseException {
log4j.info("starting update_all_tweets function");
String res = new String();
Integer countelements = 0;
while (true) {
// DBCursor cursor = this.collrd.find();
while (this.collrd.count() < 1) { // no documents to process
try {
log4j.info("there is no raw data at the moment, going to sleep for 10 seconds");
Thread.currentThread();
Thread.sleep(1000 * 10);
log4j.info("woke up, continues");
// cursor = this.collrd.find();
} catch (InterruptedException e) {
log4j.error("InterruptedException caught, at update_all_tweets");
log4j.error(e);
}
}
DBCursor cursor = this.collrd.find(); // get all documents from raw_data collection
try {
while (cursor.hasNext()) {
DBObject currdoc = cursor.next();
log4j.info("getting a document from the raw data db");
Object results = currdoc.get("results"); // result - json array of tweets
try {
res = results.toString();
} catch (NullPointerException e) {
res = "";
}
Object obj = JSONValue.parse(res);
log4j.info("making an array from the jsons tweets");
JSONArray array = (JSONArray) obj; // make an array of tweets
// JSONParser parser = new JSONParser();
try {
if (res != "") { // if there are tweets
@SuppressWarnings("rawtypes")
Iterator iterArray = array.iterator();
log4j.info("iterating over array tweets");
try {
while (iterArray.hasNext()) {
Object current = iterArray.next();
final DBObject dbObject =
(DBObject) JSON.parse(current.toString()); // parse all tweet data to json
countelements++;
// System.out.println("element number" + countelements.toString());
dbObject.put("max_id", currdoc.get("max_id")); // add max_id to tweet data
dbObject.put("query", currdoc.get("query")); // add query word to tweet data
dbObject.put(
"query_time", currdoc.get("query_time")); // add query time to tweet data
dbObject.put("query_time_string", currdoc.get("query_time_string"));
dbObject.put(
"text",
"@"
+ dbObject.get("from_user").toString()
+ ": "
+ dbObject.get("text").toString()); // add user_name to beginning of text
dbObject.put("count", 1L); // add appearance counter to tweet data
log4j.info("inserting tweet id: " + dbObject.get("id").toString());
try {
DBObject object = new BasicDBObject();
object.put(
"id", Long.parseLong(dbObject.get("id").toString())); // object to search
DBObject newobject = collat.findOne(object);
if (newobject != null) {
newobject.put(
"count",
Long.parseLong(newobject.get("count").toString())
+ 1); // update counter if id already exists
collat.update(object, newobject);
}
} catch (NullPointerException e) {
}
collat.insert(dbObject);
// collrd.findAndRemove(currdoc);
// log4j.info("calling function update_search_terms");
// final String text = "@" + dbObject.get("from_user").toString() + ": " +
// dbObject.get("text").toString();
/*Thread t10=new Thread(new Runnable(){
public void run(){
UpdateTweetCounterId(Long.parseLong(dbObject.get("id").toString()));
}
});*/
Thread t11 =
new Thread(
new Runnable() {
public void run() {
update_search_terms(
dbObject.get("text").toString(),
num_of_slots,
max_time_frame_hours,
dbObject.get("query").toString());
}
});
Thread t12 =
new Thread(
new Runnable() {
public void run() {
rate_user(
Long.parseLong(dbObject.get("from_user_id").toString()),
dbObject.get("from_user").toString(),
max_time_frame_hours);
// UpdateUserRate((long)num_of_slots,slot_time_millis,Long.parseLong(dbObject.get("from_user_id").toString()) , dbObject.get("from_user").toString() ,(long)0);
}
});
Thread t13 =
new Thread(
new Runnable() {
public void run() {
String quer = dbObject.get("query").toString();
quer = quer.replaceAll("%40", "@");
quer = quer.replaceAll("%23", "#");
long id =
(long)
(Double.parseDouble(dbObject.get("query_time").toString())
* 1000);
String idplus = dbObject.get("id").toString() + "," + id;
SearchResultId(quer, idplus);
}
});
// t10.start();
t11.start();
t12.start();
t13.start();
try {
log4j.info("Waiting for threads to finish.");
// t10.join();
t11.join();
t12.join();
t13.join();
} catch (InterruptedException e) {
log4j.error("Main thread (update_all_tweets) Interrupted");
}
}
} catch (Exception e) {
log4j.error(e);
e.printStackTrace();
}
}
} catch (NullPointerException e) {
log4j.error(e);
log4j.info("NullPointerException caught, at update_all_tweets");
}
log4j.info("removing processed document from raw_data collection");
try {
this.collrd.remove(currdoc);
} catch (Exception e) {
log4j.debug(e);
}
}
} catch (MongoException e) {
log4j.error(e);
}
}
}
