@Override
public Resource init() throws ResourceInstantiationException {
gracefulExit = false;
if (configFileURL == null) {
gracefulExit = true;
gate.util.Err.println("No configuration file provided!");
}
if (japeURL == null) {
gracefulExit = true;
gate.util.Err.println("No JAPE grammar file provided!");
}
// create the init params for the JAPE transducer
FeatureMap params = Factory.newFeatureMap();
params.put(Transducer.TRANSD_GRAMMAR_URL_PARAMETER_NAME, japeURL);
// Code borrowed from Mark Greenwood's Measurements PR
if (japeTransducer == null) {
// if this is the first time we are running init then actually create a
// new transducer as we don't already have one
FeatureMap hidden = Factory.newFeatureMap();
Gate.setHiddenAttribute(hidden, true);
japeTransducer =
(Transducer) Factory.createResource("gate.creole.Transducer", params, hidden);
} else {
// we are being run through a call to reInit so simply re-init the
// underlying JAPE transducer
japeTransducer.setParameterValues(params);
japeTransducer.reInit();
}
ConfigReader config = new ConfigReader(configFileURL);
gracefulExit = config.config();
try {
HashMap<String, String> options = config.getOptions();
patternMap = new HashMap<String, Pattern>();
addSuffixPattern("disease_suffix", options);
addWordPattern("disease_abbrevs", options);
addWordPattern("disease_sense", options);
addWordExtraPattern("disease_sense_context", options);
addPossessiveWordPattern("disease_named_syndrome", options);
addWordExtraPattern("disease_generic_context", options);
addWordExtraPattern("disease_anatomy_context", options);
addSuffixPluralPattern("procedure_suffix", options);
addWordPluralPattern("procedure_key", options);
addWordExtraPattern("procedure_anatomy_context", options);
addWordPluralPattern("symptom_key", options);
addWordPattern("test_key", options);
addSuffixPattern("anatomy_suffix_adjective", options);
addSuffixPattern("anatomy_suffix", options);
addPrefixPattern("anatomy_prefix", options);
addWordPattern("anatomy_position", options);
addWordPluralPattern("anatomy_space_region_junction", options);
addWordPattern("anatomy_part_adjective", options);
addWordPattern("anatomy_latin_noun", options);
addWordPattern("anatomy_muscle", options);
addWordPluralPattern("anatomy_part", options);
addWordPluralPattern("anatomy_fluid", options);
} catch (NullPointerException ne) {
gracefulExit = true;
gate.util.Err.println(
"Missing or unset configuration options. Please check configuration file.");
}
return this;
} // end init()
