/**
* Runs a query with an external variable declaration.
*
* @throws IOException I/O exception
*/
@Test
public void queryBindSequence() throws IOException {
Query query = session.query("declare variable $a external; $a");
query.bind("a", "1\u00012", "xs:integer");
assertEqual("1", query.next());
assertEqual("2", query.next());
query.close();
query = session.query("declare variable $a external; $a");
query.bind("a", "09\u0002xs:hexBinary\u00012", "xs:integer");
assertEqual("09", query.next());
assertEqual("2", query.next());
query.close();
query = session.query("declare variable $a external; $a");
query.bind("a", Seq.get(new Item[] {Int.get(1), Str.get("X")}, 2));
assertEqual("1", query.next());
assertEqual("X", query.next());
query.close();
query = session.query("declare variable $a external; $a");
query.bind("a", IntSeq.get(new long[] {1, 2}, AtomType.INT));
assertEqual("1", query.next());
assertEqual("2", query.next());
query.close();
query = session.query("declare variable $a external; $a");
query.bind("a", IntSeq.get(new long[] {1, 2}, AtomType.INT), "xs:integer");
assertEqual("1", query.next());
assertEqual("2", query.next());
query.close();
}
public void splitIndex(String name, String seq) {
int start = 0;
boolean go = true;
while (go) {
int end = start + numberOfBases;
if (end >= seq.length()) {
end = seq.length();
go = false;
}
String subSeq = seq.substring(start, end);
File binarySeq = new File(indexDirectory, name + "_" + start + "-" + (end - 1));
if (binarySeq.exists()) {
System.out.println("WARNING, " + binarySeq + " already exists, skipping!");
return;
}
Seq.writeBinarySequence(subSeq, binarySeq);
start = end;
}
}