/**
  * Given a DICOM object encoded as a list of attributes, get an XML document as a DOM tree.
  *
  * @param list the list of DICOM attributes
  */
 public Document getDocument(AttributeList list) {
   Document document = db.newDocument();
   org.w3c.dom.Node element = document.createElement("DicomObject");
   document.appendChild(element);
   addAttributesFromListToNode(list, document, element);
   return document;
 }
示例#2
0
  public void saveToXml(String fileName)
      throws ParserConfigurationException, FileNotFoundException, TransformerException,
          TransformerConfigurationException {
    System.out.println("Saving network topology to file " + fileName);
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document doc = parser.newDocument();

    Element root = doc.createElement("neuralNetwork");
    root.setAttribute("dateOfExport", new Date().toString());
    Element layers = doc.createElement("structure");
    layers.setAttribute("numberOfLayers", Integer.toString(this.numberOfLayers()));

    for (int il = 0; il < this.numberOfLayers(); il++) {
      Element layer = doc.createElement("layer");
      layer.setAttribute("index", Integer.toString(il));
      layer.setAttribute("numberOfNeurons", Integer.toString(this.getLayer(il).numberOfNeurons()));

      for (int in = 0; in < this.getLayer(il).numberOfNeurons(); in++) {
        Element neuron = doc.createElement("neuron");
        neuron.setAttribute("index", Integer.toString(in));
        neuron.setAttribute(
            "NumberOfInputs", Integer.toString(this.getLayer(il).getNeuron(in).numberOfInputs()));
        neuron.setAttribute(
            "threshold", Double.toString(this.getLayer(il).getNeuron(in).threshold));

        for (int ii = 0; ii < this.getLayer(il).getNeuron(in).numberOfInputs(); ii++) {
          Element input = doc.createElement("input");
          input.setAttribute("index", Integer.toString(ii));
          input.setAttribute(
              "weight", Double.toString(this.getLayer(il).getNeuron(in).getInput(ii).weight));

          neuron.appendChild(input);
        }

        layer.appendChild(neuron);
      }

      layers.appendChild(layer);
    }

    root.appendChild(layers);
    doc.appendChild(root);

    // save
    File xmlOutputFile = new File(fileName);
    FileOutputStream fos;
    Transformer transformer;

    fos = new FileOutputStream(xmlOutputFile);
    // Use a Transformer for output
    TransformerFactory transformerFactory = TransformerFactory.newInstance();
    transformer = transformerFactory.newTransformer();
    DOMSource source = new DOMSource(doc);
    StreamResult result = new StreamResult(fos);
    // transform source into result will do save
    transformer.setOutputProperty("encoding", "iso-8859-2");
    transformer.setOutputProperty("indent", "yes");
    transformer.transform(source, result);
  }
 public static Document newXMLDocument() {
   DocumentBuilder dbuilder = null;
   try {
     dbuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
   } catch (ParserConfigurationException e) {
     e.printStackTrace();
     return null;
   }
   return dbuilder.newDocument();
 }
示例#4
0
 public static Document getDocument() {
   Document doc = null;
   try {
     DocumentBuilderFactory dbfac = DocumentBuilderFactory.newInstance();
     DocumentBuilder docBuilder = dbfac.newDocumentBuilder();
     doc = docBuilder.newDocument();
   } catch (Exception exc) {
     log.error("XmlWorks::getDocument()", exc);
   }
   return doc;
 }
示例#5
0
  protected void doGet(HttpServletRequest req, HttpServletResponse res)
      throws ServletException, IOException {
    try {
      DateFormat df = DateFormat.getDateTimeInstance();
      String titleStr = "C3P0 Status - " + df.format(new Date());

      DocumentBuilderFactory fact = DocumentBuilderFactory.newInstance();
      DocumentBuilder db = fact.newDocumentBuilder();
      Document doc = db.newDocument();

      Element htmlElem = doc.createElement("html");
      Element headElem = doc.createElement("head");

      Element titleElem = doc.createElement("title");
      titleElem.appendChild(doc.createTextNode(titleStr));

      Element bodyElem = doc.createElement("body");

      Element h1Elem = doc.createElement("h1");
      h1Elem.appendChild(doc.createTextNode(titleStr));

      Element h3Elem = doc.createElement("h3");
      h3Elem.appendChild(doc.createTextNode("PooledDataSources"));

      Element pdsDlElem = doc.createElement("dl");
      pdsDlElem.setAttribute("class", "PooledDataSources");
      for (Iterator ii = C3P0Registry.getPooledDataSources().iterator(); ii.hasNext(); ) {
        PooledDataSource pds = (PooledDataSource) ii.next();
        StatusReporter sr = findStatusReporter(pds, doc);
        pdsDlElem.appendChild(sr.reportDtElem());
        pdsDlElem.appendChild(sr.reportDdElem());
      }

      headElem.appendChild(titleElem);
      htmlElem.appendChild(headElem);

      bodyElem.appendChild(h1Elem);
      bodyElem.appendChild(h3Elem);
      bodyElem.appendChild(pdsDlElem);
      htmlElem.appendChild(bodyElem);

      res.setContentType("application/xhtml+xml");

      TransformerFactory tf = TransformerFactory.newInstance();
      Transformer transformer = tf.newTransformer();
      Source src = new DOMSource(doc);
      Result result = new StreamResult(res.getOutputStream());
      transformer.transform(src, result);
    } catch (IOException e) {
      throw e;
    } catch (Exception e) {
      throw new ServletException(e);
    }
  }
 private void create() {
   try {
     tracks = new Vector();
     hash = new Hashtable();
     createDOM();
     doc = db.newDocument();
     docElt = doc.createElement(docElementName);
     doc.appendChild(docElt);
   } catch (Exception e) {
     e.printStackTrace();
   }
 }
 /**
  * Marshall a Chromosome instance to an XML Document representation, including its contained Gene
  * instances.
  *
  * @param a_subject the chromosome to represent as an XML document
  * @return a Document object representing the given Chromosome
  * @author Neil Rotstan
  * @since 1.0
  * @deprecated use XMLDocumentBuilder instead
  */
 public static Document representChromosomeAsDocument(final IChromosome a_subject) {
   // DocumentBuilders do not have to be thread safe, so we have to
   // protect creation of the Document with a synchronized block.
   // -------------------------------------------------------------
   Document chromosomeDocument;
   synchronized (m_lock) {
     chromosomeDocument = m_documentCreator.newDocument();
   }
   Element chromosomeElement = representChromosomeAsElement(a_subject, chromosomeDocument);
   chromosomeDocument.appendChild(chromosomeElement);
   return chromosomeDocument;
 }
 /**
  * Marshall a Genotype to an XML Document representation, including its population of Chromosome
  * instances.
  *
  * @param a_subject the genotype to represent as an XML document
  * @return a Document object representing the given Genotype
  * @author Neil Rotstan
  * @since 1.0
  * @deprecated use XMLDocumentBuilder instead
  */
 public static Document representGenotypeAsDocument(final Genotype a_subject) {
   // DocumentBuilders do not have to be thread safe, so we have to
   // protect creation of the Document with a synchronized block.
   // -------------------------------------------------------------
   Document genotypeDocument;
   synchronized (m_lock) {
     genotypeDocument = m_documentCreator.newDocument();
   }
   Element genotypeElement = representGenotypeAsElement(a_subject, genotypeDocument);
   genotypeDocument.appendChild(genotypeElement);
   return genotypeDocument;
 }
示例#9
0
  /** @param name creates a node with this name */
  public XML(String name) {
    try {
      // TODO is there a more efficient way of doing this? wow.
      DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
      DocumentBuilder builder = factory.newDocumentBuilder();
      Document document = builder.newDocument();
      node = document.createElement(name);
      this.parent = null;

    } catch (ParserConfigurationException pce) {
      throw new RuntimeException(pce);
    }
  }
示例#10
0
  /**
   * Writes a table to a XML-file
   *
   * @param t - Output Model
   * @param destination - File Destination
   */
  public static void writeXML(Model t, String destination) {

    try {
      // Create the XML document builder, and document that will be used
      DocumentBuilderFactory xmlBuilder = DocumentBuilderFactory.newInstance();
      DocumentBuilder Builder = xmlBuilder.newDocumentBuilder();
      Document xmldoc = Builder.newDocument();

      // create Document node, and get it into the file
      Element Documentnode = xmldoc.createElement("SPREADSHEET");
      xmldoc.appendChild(Documentnode);

      // create element nodes, and their attributes (Cells, and row/column
      // data) and their content
      for (int row = 1; row < t.getRows(); row++) {
        for (int col = 1; col < t.getCols(col); col++) {
          Element cell = xmldoc.createElement("CELL");
          // set attributes
          cell.setAttribute("column", Integer.toString(col));
          cell.setAttribute("row", Integer.toString(col));
          // set content
          cell.appendChild(xmldoc.createTextNode((String) t.getContent(row, col)));
          // append node to document node
          Documentnode.appendChild(cell);
        }
      }
      // Creating a datastream for the DOM tree
      TransformerFactory transformerFactory = TransformerFactory.newInstance();
      Transformer transformer = transformerFactory.newTransformer();
      // Indentation to make the XML file look better
      transformer.setOutputProperty(OutputKeys.METHOD, "xml");
      transformer.setOutputProperty(OutputKeys.INDENT, "yes");
      // remove the java version
      transformer.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "yes");
      DOMSource stream = new DOMSource(xmldoc);
      StreamResult target = new StreamResult(new File(destination));
      // write the file
      transformer.transform(stream, target);

    } catch (ParserConfigurationException e) {
      System.out.println("Can't create the XML document builder");
    } catch (TransformerConfigurationException e) {
      System.out.println("Can't create transformer");
    } catch (TransformerException e) {
      System.out.println("Can't write to file");
    }
  }
示例#11
0
  /**
   * Save the XML description of the circuit
   *
   * @param output an output stream to write in
   * @return true if the dump was successful, false either
   */
  public boolean dumpToXml(OutputStream output) {
    Document doc;
    Element root;

    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder builder;

    try {
      builder = factory.newDocumentBuilder();
      doc = builder.newDocument();
    } catch (ParserConfigurationException pce) {
      System.err.println("dumpToXmlFile: unable to write XML save file.");
      return false;
    }

    root = doc.createElement("Circuit");
    root.setAttribute("name", this.getName());

    for (iterNodes = this.nodes.iterator(); iterNodes.hasNext(); )
      iterNodes.next().dumpToXml(doc, root);

    root.normalize();
    doc.appendChild(root);

    try {
      TransformerFactory tffactory = TransformerFactory.newInstance();
      Transformer transformer = tffactory.newTransformer();
      transformer.setOutputProperty(OutputKeys.INDENT, "yes");
      DOMSource source = new DOMSource(doc);
      StreamResult result = new StreamResult(output);
      transformer.transform(source, result);
    } catch (TransformerConfigurationException tce) {
      System.err.println("dumpToXmlFile:  Configuration Transformer exception.");
      return false;
    } catch (TransformerException te) {
      System.err.println("dumpToXmlFile: Transformer exception.");
      return false;
    }

    return true;
  }
示例#12
0
  public void handlePageBody(PageContext pc) throws ServletException, IOException {
    ServletContext context = pc.getServletContext();
    Document doc = null;
    try {
      DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
      DocumentBuilder builder = factory.newDocumentBuilder();
      doc = builder.newDocument();
    } catch (Exception e) {
      throw new ServletException(e);
    }

    Element rootElem = doc.createElement("xaf");
    doc.appendChild(rootElem);

    try {
      DatabaseContextFactory.createCatalog(pc, rootElem);
      transform(pc, doc, ACE_CONFIG_ITEM_PROPBROWSERXSL);
    } catch (NamingException e) {
      PrintWriter out = pc.getResponse().getWriter();
      out.write(e.toString());
      e.printStackTrace(out);
    }
  }
示例#13
0
  public void CollectData(String link) {

    try {
      // Creating an empty XML Document

      DocumentBuilderFactory dbfac = DocumentBuilderFactory.newInstance();
      DocumentBuilder docBuilder = dbfac.newDocumentBuilder();
      Document doc = docBuilder.newDocument();
      int flag = 0;
      // create the root element and add it to the document
      Element movie = doc.createElement("movie");
      doc.appendChild(movie);
      movie.setAttribute("id", String.valueOf(n));
      n++;
      // create sub elements
      Element genres = doc.createElement("genres");
      Element actors = doc.createElement("actors");
      Element reviews = doc.createElement("reviews");

      URL movieUrl = new URL(link);
      URL reviewsURL = new URL(link + "reviews/#type=top_critics");
      BufferedWriter bw3 = new BufferedWriter(new FileWriter("movies.xml", true));
      int count = -1;
      String auth = "";
      BufferedReader br3 = new BufferedReader(new InputStreamReader(movieUrl.openStream()));
      String str2 = "";
      String info = "";
      while (null != (str2 = br3.readLine())) {
        // start reading the html document
        if (str2.isEmpty()) continue;
        if (count == 14) break;
        if (count == 12) {
          if (!str2.contains("<h3>Cast</h3>")) continue;
          else count++;
        }
        if (count == 13) {
          if (str2.contains(">ADVERTISEMENT</p>")) {
            count++;
            movie.appendChild(actors);
            continue;
          } else {
            if (str2.contains("itemprop=\"name\">")) {
              Element actor = doc.createElement("actor");
              actors.appendChild(actor);
              Text text = doc.createTextNode(Jsoup.parse(str2.toString()).text());
              actor.appendChild(text);
            } else continue;
          }
        }

        if (count <= 11) {
          switch (count) {
            case -1:
              {
                if (!str2.contains("property=\"og:image\"")) continue;
                else {
                  Pattern image =
                      Pattern.compile("http://.*.jpg", Pattern.CASE_INSENSITIVE | Pattern.DOTALL);
                  Matcher match = image.matcher(str2);
                  while (match.find()) {

                    Element imageLink = doc.createElement("imageLink");
                    movie.appendChild(imageLink);
                    Text text = doc.createTextNode(match.group());
                    imageLink.appendChild(text);
                    count++;
                  }
                }
                break;
              }
            case 0:
              {
                if (str2.contains("<title>")) {

                  Element name = doc.createElement("name");
                  movie.appendChild(name);
                  Text text =
                      doc.createTextNode(
                          Jsoup.parse(str2.toString().replace(" - Rotten Tomatoes", "")).text());
                  name.appendChild(text);
                  count++;
                }
                break;
              }
            case 1:
              {
                if (!str2.contains("itemprop=\"ratingValue\"")) break;
                else {
                  Element score = doc.createElement("score");
                  movie.appendChild(score);
                  Text text = doc.createTextNode(Jsoup.parse(str2.toString()).text());
                  score.appendChild(text);
                  count++;
                }
                break;
              }
            case 2:
              {
                if (!str2.contains("itemprop=\"description\">")) continue;
                else count++;
                break;
              }
            case 3:
              {
                if (!str2.contains("itemprop=\"duration\"")) info = info.concat(str2);
                else {
                  Element MovieInfo = doc.createElement("MovieInfo");
                  movie.appendChild(MovieInfo);
                  Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                  MovieInfo.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 4:
              {
                if (!str2.contains("itemprop=\"genre\"")) info = info.concat(str2);
                else {
                  Element duration = doc.createElement("duration");
                  movie.appendChild(duration);
                  Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                  duration.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 5:
              {
                if (info.contains("itemprop=\"genre\"")) {
                  Element genre = doc.createElement("genre");
                  genres.appendChild(genre);
                  Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                  genre.appendChild(text);
                  info = "";
                }
                if (str2.contains(">Directed By:<")) {
                  count++;
                  movie.appendChild(genres);
                  continue;
                } else {

                  if (str2.contains("itemprop=\"genre\"")) {
                    Element genre = doc.createElement("genre");
                    genres.appendChild(genre);
                    Text text = doc.createTextNode(Jsoup.parse(str2.toString()).text());
                    genre.appendChild(text);
                  } else continue;
                }
                break;
              }
            case 6:
              {
                if (!str2.contains(">Written By:<")) {
                  if (str2.contains(">In Theaters:<")) {
                    Element director = doc.createElement("director");
                    movie.appendChild(director);
                    Text text =
                        doc.createTextNode(
                            Jsoup.parse(info.toString().replace("Directed By: ", "")).text());
                    director.appendChild(text);
                    info = str2;
                    count += 2;
                    break;
                  }
                  info = info.concat(str2);
                } else {
                  Element director = doc.createElement("director");
                  movie.appendChild(director);
                  Text text =
                      doc.createTextNode(
                          Jsoup.parse(info.toString().replace("Directed By: ", "")).text());
                  director.appendChild(text);
                  info = "";
                  count++;
                }
                break;
              }
            case 7:
              {
                if (!str2.contains(">In Theaters:<")) {
                  if (str2.contains(">On DVD:<")) {
                    Element writer = doc.createElement("writer");
                    movie.appendChild(writer);
                    Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                    writer.appendChild(text);
                    info = str2;
                    count += 2;
                    break;
                  }
                  info = info.concat(str2);
                } else {
                  Element writer = doc.createElement("writer");
                  movie.appendChild(writer);
                  Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                  writer.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 8:
              {
                if (!str2.contains(">On DVD:<")) info = info.concat(str2);
                else {
                  Element TheatreRelease = doc.createElement("TheatreRelease");
                  movie.appendChild(TheatreRelease);
                  Text text =
                      doc.createTextNode(
                          Jsoup.parse(info.toString().replace("In Theaters:", "")).text());
                  TheatreRelease.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 9:
              {
                if (!str2.contains(">US Box Office:<")) {
                  if (str2.contains("itemprop=\"productionCompany\"")) {
                    Element DvdRelease = doc.createElement("DvdRelease");
                    movie.appendChild(DvdRelease);
                    Text text =
                        doc.createTextNode(
                            Jsoup.parse(info.toString().replace("On DVD:", "")).text());
                    DvdRelease.appendChild(text);
                    info = str2;
                    count += 2;
                    break;
                  }
                  info = info.concat(str2);
                } else {
                  Element DvdRelease = doc.createElement("DvdRelease");
                  movie.appendChild(DvdRelease);
                  Text text =
                      doc.createTextNode(
                          Jsoup.parse(info.toString().replace("On DVD:", "")).text());
                  DvdRelease.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 10:
              {
                if (!str2.contains("itemprop=\"productionCompany\"")) info = info.concat(str2);
                else {
                  Element BOCollection = doc.createElement("BOCollection");
                  movie.appendChild(BOCollection);
                  Text text =
                      doc.createTextNode(
                          Jsoup.parse(info.toString().replace("US Box Office:", "")).text());
                  BOCollection.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }
            case 11:
              {
                if (!str2.contains(">Official Site")) info = info.concat(str2);
                else {
                  Element Production = doc.createElement("Production");
                  movie.appendChild(Production);
                  Text text = doc.createTextNode(Jsoup.parse(info.toString()).text());
                  Production.appendChild(text);
                  info = str2;
                  count++;
                }
                break;
              }

            default:
              break;
          }
        }
      }
      BufferedReader br4 = new BufferedReader(new InputStreamReader(reviewsURL.openStream()));
      String str3 = "";
      String info2 = "";
      int count2 = 0;
      while (null != (str3 = br4.readLine())) {
        if (count2 == 0) {

          if (!str3.contains("<div class=\"reviewsnippet\">")) continue;
          else count2++;
        }
        if (count2 == 1) {
          if (!str3.contains("<p class=\"small subtle\">")) info2 = info2.concat(str3);
          else {
            Element review = doc.createElement("review");
            reviews.appendChild(review);
            Text text = doc.createTextNode(Jsoup.parse(info2.toString()).text());
            review.appendChild(text);
            info2 = "";
            count2 = 0;
          }
        }
      }
      movie.appendChild(reviews);
      TransformerFactory transfac = TransformerFactory.newInstance();
      Transformer trans = transfac.newTransformer();
      trans.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "yes");
      trans.setOutputProperty(OutputKeys.INDENT, "yes");

      // create string from xml tree
      StringWriter sw = new StringWriter();
      StreamResult result = new StreamResult(sw);
      DOMSource source = new DOMSource(doc);
      trans.transform(source, result);
      String xmlString = sw.toString();
      bw3.write(xmlString);
      br3.close();
      br4.close();
      bw3.close();
    } catch (Exception ex) {
      ex.printStackTrace();
    }
  }
示例#14
0
 public WriteXML(String name) throws ParserConfigurationException {
   filename = name;
   DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
   DocumentBuilder builder = factory.newDocumentBuilder();
   document = builder.newDocument();
 }