private void doHSRGBProjection(ImagePlus rgbImp) { ImageStack stack = rgbImp.getStack(); ImageStack stack2 = new ImageStack(stack.getWidth(), stack.getHeight()); for (int i = startSlice; i <= stopSlice; i++) stack2.addSlice(null, stack.getProcessor(i)); startSlice = 1; stopSlice = stack2.getSize(); doRGBProjection(stack2); }
ImageProcessor setup(ImagePlus imp) { ImageProcessor ip; int type = imp.getType(); if (type != ImagePlus.COLOR_RGB) return null; ip = imp.getProcessor(); int id = imp.getID(); int slice = imp.getCurrentSlice(); if ((id != previousImageID) | (slice != previousSlice) | (flag)) { flag = false; // if true, flags a change from HSB to RGB or viceversa numSlices = imp.getStackSize(); stack = imp.getStack(); width = stack.getWidth(); height = stack.getHeight(); numPixels = width * height; hSource = new byte[numPixels]; sSource = new byte[numPixels]; bSource = new byte[numPixels]; // restore = (int[])ip.getPixelsCopy(); //This runs into trouble sometimes, so do it the // long way: int[] temp = (int[]) ip.getPixels(); restore = new int[numPixels]; for (int i = 0; i < numPixels; i++) restore[i] = temp[i]; fillMask = new int[numPixels]; // Get hsb or rgb from image. ColorProcessor cp = (ColorProcessor) ip; IJ.showStatus("Gathering data"); if (isRGB) cp.getRGB(hSource, sSource, bSource); else cp.getHSB(hSource, sSource, bSource); IJ.showStatus("done"); // Create a spectrum ColorModel for the Hue histogram plot. Color c; byte[] reds = new byte[256]; byte[] greens = new byte[256]; byte[] blues = new byte[256]; for (int i = 0; i < 256; i++) { c = Color.getHSBColor(i / 255f, 1f, 1f); reds[i] = (byte) c.getRed(); greens[i] = (byte) c.getGreen(); blues[i] = (byte) c.getBlue(); } ColorModel cm = new IndexColorModel(8, 256, reds, greens, blues); // Make an image with just the hue from the RGB image and the spectrum LUT. // This is just for a hue histogram for the plot. Do not show it. // ByteProcessor bpHue = new ByteProcessor(width,height,h,cm); ByteProcessor bpHue = new ByteProcessor(width, height, hSource, cm); ImagePlus impHue = new ImagePlus("Hue", bpHue); // impHue.show(); ByteProcessor bpSat = new ByteProcessor(width, height, sSource, cm); ImagePlus impSat = new ImagePlus("Sat", bpSat); // impSat.show(); ByteProcessor bpBri = new ByteProcessor(width, height, bSource, cm); ImagePlus impBri = new ImagePlus("Bri", bpBri); // impBri.show(); plot.setHistogram(impHue, 0); splot.setHistogram(impSat, 1); bplot.setHistogram(impBri, 2); updateLabels(); updatePlot(); updateScrollBars(); imp.updateAndDraw(); } previousImageID = id; previousSlice = slice; return ip; }