// --------------------------------actionConnect------------------------------
private void actionConnect() {
if (oParty == null) {
JOptionPane.showMessageDialog(frame, "Make a party before trying to connect.");
return;
}
String[] oResults = (String[]) DialogManager.show(DialogManager.CONNECT, frame);
if (oResults[DialogManager.RETURN_IP].equals("cancel")) return;
lblStatus3.setText("Connecting...");
try {
oConn.connect(
oResults[DialogManager.RETURN_IP], Integer.parseInt(oResults[DialogManager.RETURN_PORT]));
} catch (UnknownHostException e) {
JOptionPane.showMessageDialog(
frame,
"The IP of the host cannot be determined.",
"Unknown Host Exception",
JOptionPane.ERROR_MESSAGE);
frame.repaint();
return;
} catch (IOException e) {
JOptionPane.showMessageDialog(
frame, e.getMessage(), "Input/Output Exception", JOptionPane.ERROR_MESSAGE);
frame.repaint();
return;
}
echo("Connected to opponent!");
tConn = new Thread(oConn, "conn");
tConn.start();
tMain = new Thread(this, "main");
tMain.start();
}
// --------------------------------actionHost---------------------------------
private void actionHost() {
if (oParty == null) {
JOptionPane.showMessageDialog(frame, "Make a party before trying to connect.");
return;
}
JFileChooser oFC = new JFileChooser(DEFAULT_MAP_DIRECTORY);
int nReturn = oFC.showOpenDialog(frame);
if (nReturn == JFileChooser.CANCEL_OPTION) {
return;
}
int nPort = Integer.parseInt((String) (DialogManager.show(DialogManager.HOST, frame)));
JDialog dlgBox = (JDialog) (DialogManager.show(DialogManager.WAITING_FOR_CONN, frame));
dlgBox.pack();
try {
oConn.host(nPort);
} catch (IOException e) {
JOptionPane.showMessageDialog(frame, e.getMessage(), "Error!", JOptionPane.ERROR_MESSAGE);
frame.repaint();
return;
}
dlgBox.setVisible(false);
echo("Connected to opponent!");
tConn = new Thread(oConn, "conn");
tConn.start();
tMain = new Thread(this, "main");
tMain.start();
try {
oMap.loadMap(oFC.getSelectedFile());
oConn.send("loadmap", oFC.getName(oFC.getSelectedFile()));
} catch (Exception e) {
e.printStackTrace();
System.exit(-1);
}
}
public synchronized void run() {
byte[] buffer = new byte[BUFFER_SIZE];
for (; ; ) {
try {
this.wait(100);
} catch (InterruptedException ie) {
}
int len = 0;
try {
int noBytes = pin.available();
if (noBytes > 0) {
len = pin.read(buffer, 0, Math.min(noBytes, BUFFER_SIZE));
if (len > 0) {
jTextArea.append(new String(buffer, 0, len));
jTextArea.setCaretPosition(jTextArea.getText().length());
}
}
} catch (IOException ioe) {
throw new UIError("Unable to read from input stream! " + ioe.getMessage());
}
}
}
void lookUpTaxonID(String taxonID) {
URI url;
try {
// We should look up the miITIS_TSN status, but since we don't
// have any options there ...
url =
new URI(
"http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value="
+ taxonID);
} catch (URISyntaxException e) {
throw new RuntimeException(e);
}
try {
Desktop desktop = Desktop.getDesktop();
desktop.browse(url);
} catch (IOException e) {
MessageBox.messageBox(
mainFrame,
"Could not open URL '" + url + "'",
"The following error occurred while looking up URL '" + url + "': " + e.getMessage(),
MessageBox.ERROR);
}
}
void searchName(String nameToMatch) {
URI url;
try {
// We should look up the miITIS_TSN status, but since we don't
// have any options there ...
url = new URI("http", "www.google.com", "/search", "q=" + nameToMatch);
// I think the URI handles the URL encoding?
} catch (URISyntaxException e) {
throw new RuntimeException(e);
}
try {
Desktop desktop = Desktop.getDesktop();
desktop.browse(url);
} catch (IOException e) {
MessageBox.messageBox(
mainFrame,
"Could not open URL '" + url + "'",
"The following error occurred while looking up URL '" + url + "': " + e.getMessage(),
MessageBox.ERROR);
}
}
public void init() {
add(intitule);
add(texte);
add(bouton);
bouton.addActionListener(this);
try {
ORB orb = ORB.init(this, null);
FileReader file = new FileReader(iorfile.value);
BufferedReader in = new BufferedReader(file);
String ior = in.readLine();
file.close();
org.omg.CORBA.Object obj = orb.string_to_object(ior);
annuaire = AnnuaireHelper.narrow(obj);
} catch (org.omg.CORBA.SystemException ex) {
System.err.println("Error");
ex.printStackTrace();
} catch (FileNotFoundException fnfe) {
System.err.println(fnfe.getMessage());
} catch (IOException io) {
System.err.println(io.getMessage());
} catch (Exception e) {
System.err.println(e.getMessage());
}
}
public static void writeArray(String s, int[] x) {
try {
RandomAccessFile output = new RandomAccessFile(s, "rw");
for (int i = 0; i < x.length; i++) output.writeInt(x[i]);
} catch (IOException e) {
System.out.println(e.getMessage());
}
}
public String getValue() {
Array value = att.getValues();
try {
return NCdumpW.printArray(value, null, null);
} catch (IOException e) {
return e.getMessage();
}
}
@Override
@SuppressWarnings("SleepWhileHoldingLock")
public void run() {
try {
// initialize the statusbar
status.removeAll();
JProgressBar progress = new JProgressBar();
progress.setMinimum(0);
progress.setMaximum(doc.getLength());
status.add(progress);
status.revalidate();
// start writing
Writer out = new FileWriter(f);
Segment text = new Segment();
text.setPartialReturn(true);
int charsLeft = doc.getLength();
int offset = 0;
while (charsLeft > 0) {
doc.getText(offset, Math.min(4096, charsLeft), text);
out.write(text.array, text.offset, text.count);
charsLeft -= text.count;
offset += text.count;
progress.setValue(offset);
try {
Thread.sleep(10);
} catch (InterruptedException e) {
Logger.getLogger(FileSaver.class.getName()).log(Level.SEVERE, null, e);
}
}
out.flush();
out.close();
} catch (IOException e) {
final String msg = e.getMessage();
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
getFrame(),
"Could not save file: " + msg,
"Error saving file",
JOptionPane.ERROR_MESSAGE);
}
});
} catch (BadLocationException e) {
System.err.println(e.getMessage());
}
// we are done... get rid of progressbar
status.removeAll();
status.revalidate();
}
@Override
public void run() {
try {
// initialize the statusbar
status.removeAll();
JProgressBar progress = new JProgressBar();
progress.setMinimum(0);
progress.setMaximum((int) f.length());
status.add(progress);
status.revalidate();
// try to start reading
Reader in = new FileReader(f);
char[] buff = new char[4096];
int nch;
while ((nch = in.read(buff, 0, buff.length)) != -1) {
doc.insertString(doc.getLength(), new String(buff, 0, nch), null);
progress.setValue(progress.getValue() + nch);
}
} catch (IOException e) {
final String msg = e.getMessage();
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
getFrame(),
"Could not open file: " + msg,
"Error opening file",
JOptionPane.ERROR_MESSAGE);
}
});
} catch (BadLocationException e) {
System.err.println(e.getMessage());
}
doc.addUndoableEditListener(undoHandler);
// we are done... get rid of progressbar
status.removeAll();
status.revalidate();
resetUndoManager();
if (elementTreePanel != null) {
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
elementTreePanel.setEditor(getEditor());
}
});
}
}
public File getCurrentFile(boolean shouldSave) {
if (shouldSave && _editingFile == null && isDirty()) {
try {
saveAsFile(Settings.isMac());
} catch (IOException e) {
Debug.error(
me + "getCurrentFile: Problem while trying to save %s\n%s",
_editingFile.getAbsolutePath(),
e.getMessage());
}
}
return _editingFile;
}
public String getData() {
ByteArrayOutputStream out = new ByteArrayOutputStream();
try {
getDrawing().getOutputFormats().get(0).write(out, getDrawing());
return out.toString("UTF8");
} catch (IOException e) {
SVGTextFigure tf = new SVGTextFigure();
tf.setText(e.getMessage());
tf.setBounds(new Point2D.Double(10, 10), new Point2D.Double(100, 100));
getDrawing().add(tf);
e.printStackTrace();
return "";
}
}
@Override
public void actionPerformed(ActionEvent ev) {
if (ev.getSource() == btn) {
File file;
String string = "";
try {
if (radioRead.isSelected()) {
file = new File(txt.getText());
DataInputStream input = new DataInputStream(new FileInputStream(file));
int inByte;
while ((inByte = input.read()) != -1) {
string += (char) inByte;
}
input.close();
} else if (radioEncrypt.isSelected()) {
string = fileContent.getOut();
String strEncrypt = new String();
for (int i = 0; i < string.length(); i++) {
char ch = string.charAt(i);
if (ch >= 'A' && ch <= 'Z') {
ch += 13;
if (ch > 'Z') {
ch -= 26;
}
} else if (ch >= 'a' && ch <= 'z') {
ch += 13;
if (ch > 'z') {
ch -= 26;
}
}
strEncrypt += ch;
}
string = strEncrypt;
}
if (fileContent == null) {
fileContent = new FileContent(string);
} else {
fileContent.setVisible(true);
fileContent.setOut(string);
}
} catch (FileNotFoundException e) {
JOptionPane.showMessageDialog(this, "Can't find the file.");
} catch (IOException e) {
JOptionPane.showMessageDialog(this, "IO Exception " + e.getMessage());
}
}
}
public File copyFileToBundle(String filename) {
File f = new File(filename);
String bundlePath = getSrcBundle();
if (f.exists()) {
try {
File newFile = FileManager.smartCopy(filename, bundlePath);
return newFile;
} catch (IOException e) {
Debug.error(
me + "copyFileToBundle: Problem while trying to save %s\n%s", filename, e.getMessage());
return f;
}
}
return null;
}
public static void main(String[] args) {
MyCustomizableGUI custGUI = new MyCustomizableGUI();
UserPreferences savedPrefs;
try (FileInputStream fileIn = new FileInputStream("preferences.ser");
ObjectInputStream objectIn = new ObjectInputStream(fileIn); ) {
savedPrefs = (UserPreferences) objectIn.readObject();
if (savedPrefs.getColor().contains("Red")) {
custGUI.textField.setForeground(Color.red);
custGUI.color.setSelectedItem("Red");
} else if (savedPrefs.getColor().contains("Green")) {
custGUI.textField.setForeground(Color.green);
custGUI.color.setSelectedItem("Green");
} else if (savedPrefs.getColor().contains("Blue")) {
custGUI.textField.setForeground(Color.blue);
custGUI.color.setSelectedItem("Blue");
} else if (savedPrefs.getColor().contains("Cyan")) {
custGUI.textField.setForeground(Color.cyan);
custGUI.color.setSelectedItem("Cyan");
} else if (savedPrefs.getColor().contains("Magenta")) {
custGUI.textField.setForeground(Color.magenta);
custGUI.color.setSelectedItem("Magenta");
} else if (savedPrefs.getColor().contains("Yellow")) {
custGUI.textField.setForeground(Color.yellow);
custGUI.color.setSelectedItem("Yellow");
} else if (savedPrefs.getColor().contains("Black")) {
custGUI.textField.setForeground(Color.black);
custGUI.color.setSelectedItem("Black");
}
custGUI.setFont(savedPrefs.getFont(), savedPrefs.getFontSize());
custGUI.font.setSelectedItem(savedPrefs.getFont());
custGUI.fontSize.setSelectedItem("" + savedPrefs.getFontSize());
} catch (FileNotFoundException noFile) {
// load default font and color
custGUI.setFont("Arial", 25);
custGUI.textField.setForeground(Color.black);
} catch (ClassNotFoundException noPrefs) {
noPrefs.printStackTrace();
} catch (IOException e) {
System.out.println("I/O Error: " + e.getMessage());
}
}
/**
* Handle the -biojava option
*
* <p>Command line syntax: art -biojava org.biojava.bio.seq.io.EmblLikeFormat foo.embl
*
* <p>BioJava formats: EmblLikeFormat, FastaFormat, GAMEFormat, GenbankFormat, PhredFormat
*/
private void handleBioJava(final String[] args) {
if (args.length == 3) {
final String class_name = args[1];
final String location = args[2];
final Document location_document = DocumentFactory.makeDocument(location);
try {
final Object biojava_object = Class.forName(class_name).newInstance();
final EntryInformation entry_information = Options.getArtemisEntryInformation();
final uk.ac.sanger.artemis.io.BioJavaEntry emblEntry;
if (biojava_object instanceof SequenceFormat) {
final SequenceFormat sequence_format = (SequenceFormat) biojava_object;
emblEntry =
new uk.ac.sanger.artemis.io.BioJavaEntry(
entry_information, location_document, sequence_format);
final Entry new_entry = new Entry(emblEntry);
final EntryEdit new_entry_edit = makeEntryEdit(new_entry);
new_entry_edit.setVisible(true);
} else new MessageDialog(this, "not a SequenceFormat: " + class_name);
} catch (IllegalAccessException e) {
new MessageDialog(this, "cannot create class: " + class_name + " - IllegalAccessException");
} catch (ClassNotFoundException e) {
new MessageDialog(this, "cannot find class: " + class_name);
} catch (ClassCastException e) {
new MessageDialog(this, class_name + " is not a sub-class of " + "SequenceFormat");
} catch (IOException e) {
new MessageDialog(this, "I/O error while reading from " + location + ": " + e.getMessage());
} catch (NoSequenceException e) {
new MessageDialog(this, location + " contained no sequence");
} catch (InstantiationException e) {
new MessageDialog(this, "cannot instantiate " + class_name);
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ location
+ " has an out of range location: "
+ e.getMessage());
}
} else new MessageDialog(this, "the -biojava option needs two arguments");
}
private void actionPerformedUpdates(Window _parent) {
boolean tempDirty = isDirty();
if (paneNaming.isDirty()) {
String filename = paneNaming.getAbsolutePath();
String oldFilename = _imgBtn.getFilename();
if (FileManager.exists(filename)) {
String name = FileManager.getName(filename);
int ret =
JOptionPane.showConfirmDialog(
_parent,
SikuliIDEI18N._I("msgFileExists", name),
SikuliIDEI18N._I("dlgFileExists"),
JOptionPane.WARNING_MESSAGE,
JOptionPane.YES_NO_OPTION);
if (ret != JOptionPane.YES_OPTION) {
return;
}
}
try {
FileManager.xcopy(oldFilename, filename, null);
(new File(oldFilename)).delete();
_imgBtn.setFilename(filename);
} catch (IOException ioe) {
Debug.error("renaming failed: " + oldFilename + " " + filename);
Debug.error(ioe.getMessage());
}
paneNaming.updateFilename();
addDirty(true);
}
addDirty(
_imgBtn.setParameters(
_screenshot.isExact(), _screenshot.getSimilarity(), _screenshot.getNumMatches()));
addDirty(_imgBtn.setTargetOffset(_tarOffsetPane.getTargetOffset()));
Debug.log(2, "update: " + _imgBtn.toString());
if (isDirty() || tempDirty) {
int i = _imgBtn.getWindow().getTabbedPane().getSelectedIndex();
_imgBtn.getWindow().setMessageApplied(i, true);
_imgBtn.repaint();
}
}
public static String readArray(String s) {
String output = "[ ";
boolean endOfFile = false;
try {
RandomAccessFile input = new RandomAccessFile(s, "rw");
input.seek(0);
while (!endOfFile) {
try {
output = output + input.readInt() + " ";
} catch (EOFException e) {
endOfFile = true;
output = output + "]";
}
}
} catch (IOException e) {
return e.getMessage();
}
return output;
}
public GuiFriendlizerApp() {
super(new BorderLayout());
// Init jPanel controls
initComponent();
// Clear output text area (as a logger)
logger.setText(null);
try {
// Loading configuration
moduleConfiguration = new ModuleConfiguration();
// Print guide
FriendlizerUtilities.Log(logger, "Steps:");
FriendlizerUtilities.Log(logger, "1.Chosing your NetBeans IDE folder");
FriendlizerUtilities.Log(logger, "2.Patching it.");
FriendlizerUtilities.Log(logger, "======================================");
} catch (IOException e) {
FriendlizerUtilities.Log(logger, "Loading configuration error: " + e.getMessage());
}
}
@Override
public void action(final Object comp) {
final String pth = path();
final IOFile io = new IOFile(pth);
String inf = io.isDir() && io.children().length > 0 ? DIR_NOT_EMPTY : null;
ok = !pth.isEmpty();
final SerialMethod mth = SerialMethod.valueOf(method.getSelectedItem());
final OptionsOption<? extends Options> opts =
mth == SerialMethod.JSON
? SerializerOptions.JSON
: mth == SerialMethod.CSV ? SerializerOptions.CSV : null;
final boolean showmparams = opts != null;
mparams.setEnabled(showmparams);
if (ok) {
gui.gopts.set(GUIOptions.INPUTPATH, pth);
try {
if (comp == method) {
if (showmparams) {
final Options mopts = options(null).get(opts);
mparams.setToolTipText(tooltip(mopts));
mparams.setText(mopts.toString());
} else {
mparams.setToolTipText(null);
mparams.setText("");
}
}
Serializer.get(new ArrayOutput(), options(mth));
} catch (final IOException ex) {
ok = false;
inf = ex.getMessage();
}
}
info.setText(inf, ok ? Msg.WARN : Msg.ERROR);
enableOK(buttons, B_OK, ok);
}
MyCustomizableGUI() {
this.setLayout(new BoxLayout(this, BoxLayout.Y_AXIS));
textField = new JTextField(20);
buttonPref = new JButton("Preferences");
this.add(textField);
this.add(buttonPref);
buttonPref.addActionListener(evt -> prefDialog.setVisible(true));
frame = new JFrame("My text editor");
frame.setContentPane(this);
frame.pack();
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
frame.setVisible(true);
// Preferences dialog box
prefDialog = new JDialog(frame, "Dialog", true);
prefDialog.setLayout(new BorderLayout());
JPanel p1 = new JPanel();
p1.setLayout(new GridLayout(3, 2));
JPanel p2 = new JPanel();
p2.setLayout(new BoxLayout(p2, BoxLayout.X_AXIS));
buttonSave = new JButton("Save");
buttonCancel = new JButton("Cancel");
buttonSave.addActionListener(
evtSave -> {
String fontChosen;
int fontSizeChosen;
prefDialog.setVisible(false);
if ((String) color.getSelectedItem() == "Red") {
textField.setForeground(Color.red);
} else if ((String) color.getSelectedItem() == "Green") {
textField.setForeground(Color.green);
} else if ((String) color.getSelectedItem() == "Blue") {
textField.setForeground(Color.blue);
} else if ((String) color.getSelectedItem() == "Cyan") {
textField.setForeground(Color.cyan);
} else if ((String) color.getSelectedItem() == "Magenta") {
textField.setForeground(Color.magenta);
} else if ((String) color.getSelectedItem() == "Yellow") {
textField.setForeground(Color.yellow);
} else if ((String) color.getSelectedItem() == "Black") {
textField.setForeground(Color.black);
}
fontChosen = (String) font.getSelectedItem();
fontSizeChosen = Integer.parseInt((String) fontSize.getSelectedItem());
textField.setFont(new Font(fontChosen, Font.PLAIN, fontSizeChosen));
UserPreferences userPrefs = new UserPreferences();
userPrefs.setColor((String) color.getSelectedItem());
userPrefs.setFont(fontChosen);
userPrefs.setFontSize(fontSizeChosen);
try (FileOutputStream fileOut = new FileOutputStream("preferences.ser");
ObjectOutputStream objectOut = new ObjectOutputStream(fileOut); ) {
objectOut.writeObject(userPrefs);
} catch (IOException ioe) {
System.out.println("I/O error: " + ioe.getMessage());
}
});
buttonCancel.addActionListener(evt -> prefDialog.setVisible(false));
colorLabel = new JLabel("Color:");
fontLabel = new JLabel("Font:");
fontSizeLabel = new JLabel("Font size:");
color = new JComboBox(colorList);
font = new JComboBox(fontList);
fontSize = new JComboBox(fontSizeList);
p1.add(colorLabel);
p1.add(color);
p1.add(fontLabel);
p1.add(font);
p1.add(fontSizeLabel);
p1.add(fontSize);
p2.add(buttonCancel);
p2.add(buttonSave);
prefDialog.add(BorderLayout.NORTH, p1);
prefDialog.add(BorderLayout.SOUTH, p2);
prefDialog.pack();
}
