/**
* Returns the read's unclipped start if the read is on the forward strand, or the read's
* unclipped end if the read is on the reverse strand.
*
* @param read read whose stranded unclipped start to retrieve
* @return the read's unclipped start if the read is on the forward strand, or the read's
* unclipped end if the read is on the reverse strand.
*/
public static int getStrandedUnclippedStart(final GATKRead read) {
return read.isReverseStrand() ? read.getUnclippedEnd() : read.getUnclippedStart();
}
