@Test
public void testConvertInSet() throws Exception {
VistaDataChunk fragment =
MockVistaDataChunks.createFromJson(
getObservationInSetResourceAsStream(), mockPatient, "observation");
fragment.setLocalPatientId("25");
Observation observation = (Observation) importer.convert(fragment);
assertThat(observation.getPid(), is(MOCK_PID));
assertThat(
observation.getUid(),
is(
UidUtils.getObservationUid(
fragment.getSystemId(), fragment.getLocalPatientId(), observation.getLocalId())));
assertThat(observation.getEntered(), is(new PointInTime(2013, 2, 15, 14, 31, 50)));
assertThat(observation.getFacilityCode(), is("500D"));
assertThat(observation.getFacilityName(), is("SLC-FO HMP DEV"));
assertThat(observation.getInterpretationCode(), is("urn:hl7:observation-interpretation:U"));
assertThat(observation.getInterpretationName(), is("Unknown"));
assertThat(observation.getLocalId(), is("{B14A750E-9849-4A50-9725-95EBD2289526}"));
assertThat(observation.getLocationName(), is("GEN MED"));
assertThat(observation.getLocationUid(), is("urn:va:location:F484:9"));
assertThat(observation.getObserved(), is(new PointInTime(2013, 2, 15, 6, 53)));
assertThat(observation.getResult(), is("TRIPLE"));
assertThat(observation.getSetID(), is("{1BDC4488-C9CD-415E-BB93-F52C5945CB1A}"));
assertThat(observation.getSetName(), is("triple lumen cath L Subclavian"));
assertThat(observation.getSetStart(), is(new PointInTime(2013, 2, 14, 14, 27)));
assertThat(observation.getSetType(), is("IV"));
assertThat(observation.getStatusCode(), is("urn:va:observation-status:complete"));
assertThat(observation.getStatusName(), is("complete"));
assertThat(
observation.getTypeCode(),
is("urn:va:clioterminology:{E038D201-2840-B759-4D91-44A093768F8B}"));
assertThat(observation.getTypeName(), is("CENTRAL LINE TYPE"));
}
@Test
public void testNonInterdisciplinary() {
Document a =
(Document)
importer.convert(
MockVistaDataChunks.createFromJson(
getDocumentResourceAsStream("document.json"), mockPatient, "document"));
assertThat(a.getIsInterdisciplinary(), is(equalTo("false")));
}
@Test
public void testInterdisciplinaryChild() {
Document a =
(Document)
importer.convert(
MockVistaDataChunks.createFromJson(
getDocumentResourceAsStream("interdisc_doc_child.json"),
mockPatient,
"document"));
assertThat(a.getInterdisciplinaryType(), is(equalTo("child")));
assertThat(a.getIsInterdisciplinary(), is(equalTo("true")));
}
@Test
public void testConvertWithQualifiers() throws Exception {
LinkedHashMap<String, Object> map = new LinkedHashMap<>(3);
map.put("systemId", "F484");
map.put("code", "500D");
map.put("localPatientId", "231");
mockPatient.addToFacilities(new PatientFacility(map));
VistaDataChunk fragment =
MockVistaDataChunks.createFromJson(
getObservationWithQualifiersResourceAsStream(), mockPatient, "observation");
fragment.setLocalPatientId("231");
Observation observation = (Observation) importer.convert(fragment);
assertNotNull(observation);
assertEquals(MOCK_PID, observation.getPid());
assertEquals("500D", observation.getFacilityCode());
assertEquals("SLC-FO HMP DEV", observation.getFacilityName());
assertEquals("urn:va:location:F484:56", observation.getLocationUid());
assertEquals("5TH FLOOR", observation.getLocationName());
assertEquals(
UidUtils.getObservationUid("F484", fragment.getLocalPatientId(), observation.getLocalId()),
observation.getUid());
assertEquals("{D4953826-902D-4722-9520-BE1916BF739B}", observation.getLocalId());
assertEquals("Clinical Observation", observation.getKind());
assertEquals(
"urn:va:clioterminology:{0F33223E-DF2C-6B8B-5201-5E091C5F9065}", observation.getTypeCode());
assertEquals("TEMPERATURE", observation.getTypeName());
assertEquals("102.5", observation.getResult());
assertEquals("F", observation.getUnits());
assertEquals("urn:hl7:observation-interpretation:H", observation.getInterpretationCode());
assertEquals("High", observation.getInterpretationName());
assertEquals(new PointInTime(2012, 6, 29, 16, 14), observation.getObserved());
assertEquals(new PointInTime(2012, 6, 29, 16, 17, 29), observation.getEntered());
assertEquals("complete", observation.getStatusName());
assertNull(observation.getMethodCode());
assertNull(observation.getMethodName());
assertEquals("4500642", observation.getBodySiteCode());
assertEquals("ORAL", observation.getBodySiteName());
assertNull(observation.getComment());
assertNull(observation.getVaStatus());
assertEquals("quality: ACTUAL", observation.getQualifierText());
assertEquals(1, observation.getQualifiers().size());
assertEquals("4688634", observation.getQualifiers().iterator().next().getCode());
assertEquals("ACTUAL", observation.getQualifiers().iterator().next().getName());
assertEquals("quality", observation.getQualifiers().iterator().next().getType());
}
@Test
public void testConvert() throws Exception {
LinkedHashMap<String, Object> map = new LinkedHashMap<>(3);
map.put("systemId", "F484");
map.put("code", "500D");
map.put("localPatientId", "100847");
mockPatient.addToFacilities(new PatientFacility(map));
VistaDataChunk fragment =
MockVistaDataChunks.createFromJson(
getObservationResourceAsStream(), mockPatient, "observation");
fragment.setLocalPatientId("100847");
Observation observation = (Observation) importer.convert(fragment);
assertNotNull(observation);
assertEquals(MOCK_PID, observation.getPid());
assertEquals("500D", observation.getFacilityCode());
assertEquals("SLC-FO HMP DEV", observation.getFacilityName());
assertEquals("urn:va:location:F484:5", observation.getLocationUid());
assertEquals("3N SURGERY", observation.getLocationName());
assertEquals(
UidUtils.getObservationUid("F484", fragment.getLocalPatientId(), observation.getLocalId()),
observation.getUid());
assertEquals("{F7A04600-1F7E-4DC7-B71C-136647E76C8A}", observation.getLocalId());
assertEquals("Clinical Observation", observation.getKind());
assertEquals(
"urn:va:clioterminology:{56BD11AB-FE61-4785-B3CA-C528A5F4EBD6}", observation.getTypeCode());
assertEquals("OUTPUT - EMESIS", observation.getTypeName());
assertEquals("1000", observation.getResult());
assertEquals("ml", observation.getUnits());
assertEquals("urn:hl7:observation-interpretation:N", observation.getInterpretationCode());
assertEquals("Normal", observation.getInterpretationName());
assertEquals(new PointInTime(2011, 11, 18, 13, 17), observation.getObserved());
assertEquals(new PointInTime(2011, 11, 30, 13, 21, 26), observation.getEntered());
assertEquals("complete", observation.getStatusName());
assertNull(observation.getMethodCode());
assertNull(observation.getMethodName());
assertNull(observation.getBodySiteCode());
assertNull(observation.getBodySiteName());
assertNull(observation.getComment());
assertNull(observation.getVaStatus());
assertNull(observation.getQualifierText());
}
@Test
public void testConvert() throws Exception {
VistaDataChunk chunk =
MockVistaDataChunks.createFromJson(
PatientDemographicsImporterTest.class.getResourceAsStream("patient.json"),
mockPatient,
"patient");
PatientDemographicsImporter pi = new PatientDemographicsImporter();
PatientDemographics p = pi.convert(chunk);
Assert.assertNotNull(p);
Assert.assertEquals(
p.getUid(), UidUtils.getPatientUid(chunk.getSystemId(), chunk.getLocalPatientId()));
Assert.assertEquals("10104", p.getIcn());
Assert.assertEquals("AVIVAPATIENT", p.getFamilyName());
Assert.assertEquals("TWENTYFOUR", p.getGivenNames());
Assert.assertEquals("A0004", p.getBriefId());
Assert.assertEquals("666000004", p.getSsn());
Assert.assertTrue(p.isSensitive());
Assert.assertEquals(new PointInTime(1935, 4, 7), p.getBirthDate());
Assert.assertEquals("Male", p.getGenderName());
Assert.assertEquals("urn:va:pat-gender:M", p.getGenderCode());
// TODO: test for religion (needs code translation)
Assert.assertTrue(p.isVeteran());
Assert.assertEquals("177", p.getLrdfn());
Assert.assertTrue(p.isServiceConnected());
Assert.assertEquals("10", p.getServiceConnectedPercent());
Assert.assertEquals(1, p.getAddress().size());
Address address = p.getAddress().iterator().next();
Assert.assertEquals("Any Street", address.getLine1());
Assert.assertEquals("Any Town", address.getCity());
Assert.assertEquals("WEST VIRGINIA", address.getState());
Assert.assertEquals("99998-0071", address.getZip());
Assert.assertEquals(1, p.getPatientRecordFlag().size());
PatientRecordFlag flag = p.getPatientRecordFlag().iterator().next();
Assert.assertEquals("WANDERER", flag.getName());
Assert.assertEquals("patient has a history of wandering off and getting lost", flag.getText());
Assert.assertNotNull(p.getMaritalStatusName());
Assert.assertEquals("urn:va:pat-maritalStatus:D", p.getMaritalStatusCode());
Assert.assertEquals("Divorced", p.getMaritalStatusName());
Assert.assertEquals(1, p.getAlias().size());
Alias alias = p.getAlias().iterator().next();
Assert.assertEquals("P4", alias.getFullName());
Assert.assertNull(alias.getFamilyName());
Assert.assertNull(alias.getGivenNames());
Assert.assertEquals(2, p.getTelecom().size());
Set<Telecom> telecoms = p.getTelecom();
for (Telecom telecom : telecoms) {
if (telecom.getUse().equals("H")) {
Assert.assertEquals("(222)555-8235", telecom.getValue());
} else if (telecom.getUse().equals("WP")) {
Assert.assertEquals("(222)555-7720", telecom.getValue());
} else {
Assert.fail();
}
}
Assert.assertEquals(1, p.getFacility().size()); // .facilities.size()
SortedSet<PatientFacility> facilities = p.getFacility();
PatientFacility facility = facilities.first();
Assert.assertEquals("500", facility.getCode());
Assert.assertEquals("CAMP MASTER", facility.getName());
Assert.assertEquals(chunk.getSystemId(), facility.getSystemId());
Assert.assertEquals(chunk.getLocalPatientId(), facility.getLocalPatientId());
Assert.assertFalse(facility.isHomeSite());
Assert.assertEquals(6, p.getExposure().size());
// assertEquals("urn:va:N", p.getExposure().iterator().next().getUid());
Assert.assertEquals(1, p.getContact().size());
PatientContact support = p.getContact().iterator().next();
Assert.assertEquals("urn:va:pat-contact:NOK", support.getTypeCode());
Assert.assertEquals("Next of Kin", support.getTypeName());
Assert.assertEquals("VETERAN,BROTHER", support.getName());
}
