private void assertExpectednessMultipleTAAE(
AbstractStudyInterventionExpectedAE abstractStudyInterventionExpectedAE) {
assertEquals("96.13", format(abstractStudyInterventionExpectedAE.getExpectednessFrequency()));
assertEquals("21.87", format(abstractStudyInterventionExpectedAE.getGrade1Frequency()));
assertEquals("68.50", format(abstractStudyInterventionExpectedAE.getGrade2Frequency()));
assertEquals("9.54", format(abstractStudyInterventionExpectedAE.getGrade3Frequency()));
assertEquals("79.59", format(abstractStudyInterventionExpectedAE.getGrade4Frequency()));
assertEquals("44.56", format(abstractStudyInterventionExpectedAE.getGrade5Frequency()));
assertTrue(abstractStudyInterventionExpectedAE.isExpected());
}
private void assertExpectednessUpdatedTAAE(
AbstractStudyInterventionExpectedAE abstractStudyInterventionExpectedAE) {
assertEquals("84.00", format(abstractStudyInterventionExpectedAE.getExpectednessFrequency()));
assertEquals("36.00", format(abstractStudyInterventionExpectedAE.getGrade1Frequency()));
assertEquals("19.00", format(abstractStudyInterventionExpectedAE.getGrade2Frequency()));
assertEquals("8.49", format(abstractStudyInterventionExpectedAE.getGrade3Frequency()));
assertEquals("12.07", format(abstractStudyInterventionExpectedAE.getGrade4Frequency()));
assertEquals("68.64", format(abstractStudyInterventionExpectedAE.getGrade5Frequency()));
assertFalse(abstractStudyInterventionExpectedAE.isExpected());
}
private void assertExpectednessSingleTAAE(
AbstractStudyInterventionExpectedAE abstractStudyInterventionExpectedAE) {
assertEquals("60.00", format(abstractStudyInterventionExpectedAE.getExpectednessFrequency()));
assertEquals("20.00", format(abstractStudyInterventionExpectedAE.getGrade1Frequency()));
assertEquals("10.00", format(abstractStudyInterventionExpectedAE.getGrade2Frequency()));
assertEquals("4.34", format(abstractStudyInterventionExpectedAE.getGrade3Frequency()));
assertEquals("6.23", format(abstractStudyInterventionExpectedAE.getGrade4Frequency()));
assertEquals("44.00", format(abstractStudyInterventionExpectedAE.getGrade5Frequency()));
assertFalse(abstractStudyInterventionExpectedAE.isExpected());
}
public void testSynchronizeStudyWithAgent() {
{
StudyAgent studyAgent = studyAgentDao.getById(-1);
Study s = studyDao.getById(-2);
System.out.println(s.getExpectedAECtcTerms().size());
service.synchronizeStudyWithAgent(studyAgent, AgentSpecificTerm.EXPTECTED_AE_ADDED);
studyDao.save(studyAgent.getStudy());
}
interruptSession();
{
Study s = studyDao.getById(-2);
assertEquals(3, s.getExpectedAECtcTerms().size());
assertEquals(1, s.getExpectedAEMeddraLowLevelTerms().size());
assertEquals(
2, s.getTreatmentAssignments().get(0).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
2, s.getTreatmentAssignments().get(1).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
2, s.getTreatmentAssignments().get(0).getAbstractStudyInterventionExpectedAEs().size());
assertEquals(
2, s.getTreatmentAssignments().get(1).getAbstractStudyInterventionExpectedAEs().size());
assertExpectednessSingleTAAE(
s.getTreatmentAssignments()
.get(0)
.getExistingTerm(agentSpecificTermDao.getById(-1).getTerm()));
}
interruptSession();
{
StudyAgent studyAgent = studyAgentDao.getById(-2);
service.synchronizeStudyWithAgent(studyAgent, AgentSpecificTerm.EXPTECTED_AE_ADDED);
studyDao.save(studyAgent.getStudy());
}
interruptSession();
{
Study s = studyDao.getById(-2);
assertEquals(6, s.getExpectedAECtcTerms().size());
assertEquals(1, s.getExpectedAEMeddraLowLevelTerms().size());
assertEquals(
2, s.getTreatmentAssignments().get(0).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
2, s.getTreatmentAssignments().get(1).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
4, s.getTreatmentAssignments().get(0).getAbstractStudyInterventionExpectedAEs().size());
assertEquals(
4, s.getTreatmentAssignments().get(1).getAbstractStudyInterventionExpectedAEs().size());
assertExpectednessMultipleTAAE(
s.getTreatmentAssignments()
.get(0)
.getExistingTerm(agentSpecificTermDao.getById(-1).getTerm()));
StudyAgent studyAgent = studyAgentDao.getById(-2);
service.synchronizeStudyWithAgent(studyAgent, AgentSpecificTerm.EXPTECTED_AE_ADDED);
studyDao.save(studyAgent.getStudy());
}
interruptSession();
{
Study s = studyDao.getById(-2);
assertEquals(6, s.getExpectedAECtcTerms().size());
assertEquals(1, s.getExpectedAEMeddraLowLevelTerms().size());
assertEquals(
2, s.getTreatmentAssignments().get(0).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
2, s.getTreatmentAssignments().get(1).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
4, s.getTreatmentAssignments().get(0).getAbstractStudyInterventionExpectedAEs().size());
assertEquals(
4, s.getTreatmentAssignments().get(1).getAbstractStudyInterventionExpectedAEs().size());
assertExpectednessMultipleTAAE(
s.getTreatmentAssignments()
.get(0)
.getExistingTerm(agentSpecificTermDao.getById(-1).getTerm()));
}
interruptSession();
{
Study s = studyDao.getById(-2);
s.getExpectedAECtcTerms().size();
s.getExpectedAEMeddraLowLevelTerms().size();
for (TreatmentAssignment ta : s.getTreatmentAssignments()) {
ta.getTreatmentAssignmentStudyInterventions().size();
for (AbstractStudyInterventionExpectedAE as :
ta.getAbstractStudyInterventionExpectedAEs()) {
as.getTreatmentAssignmentAgents().size();
}
}
for (StudyAgent sa : s.getStudyAgents()) {
if (sa.getAgent() != null) {
sa.getAgent().getAgentSpecificTerms().size();
sa.getTreatmentAssignmentAgents().size();
}
}
}
interruptSession();
{
Study s = studyDao.getById(-2);
StudyAgent studyAgent = s.getStudyAgents().get(0);
studyAgent.retire();
service.synchronizeStudyWithAgent(studyAgent, AgentSpecificTerm.EXPTECTED_AE_DELETED);
studyAgent.removeTreatmentAssignmentAgents();
studyDao.save(studyAgent.getStudy());
interruptSession();
s = studyDao.getById(-2);
for (ExpectedAECtcTerm ex_ae : s.getExpectedAECtcTerms()) {
System.out.println(ex_ae.getCtcTerm().getCtepTerm());
}
assertEquals(4, s.getExpectedAECtcTerms().size());
assertEquals(1, s.getExpectedAEMeddraLowLevelTerms().size());
assertEquals(
1, s.getTreatmentAssignments().get(0).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
1, s.getTreatmentAssignments().get(1).getTreatmentAssignmentStudyInterventions().size());
assertEquals(
2, s.getTreatmentAssignments().get(0).getAbstractStudyInterventionExpectedAEs().size());
assertEquals(
2, s.getTreatmentAssignments().get(1).getAbstractStudyInterventionExpectedAEs().size());
assertExpectednessSingleTAAE(
s.getTreatmentAssignments()
.get(0)
.getExistingTerm(agentSpecificTermDao.getById(-1).getTerm()));
}
}