@Port(direction = Direction.INPUT, name = "Set Experiment to upload", order = 1)
public void setExperiment(IExperiment selExp) {
this.selExp = selExp;
if (this.selExp.getMapIntraExpsColors() != null) {
isInter = true;
} else {
isInter = false;
}
try {
// First step, send Experiment data
String json = generateJSON();
// Second step, receive Experiment bio_ID from BiofOmics
String bioID = getBioID(json);
if (!bioID.isEmpty()) {
// Third step, set bio_ID in the Experiment
boolean success = setBioID(bioID);
if (success) {
// Four step, create Experiment files and send them to
// BiofOmics
String zipPath = saveExpInTempFolder();
json = generateJSON(zipPath);
// Call webService to upload the file
int serverCode = uploadExperiment(json);
if (serverCode < 400) {
ShowDialog.showInfo(
I18n.get("updloadOkTitle"),
I18n.get("uploadOk1")
+ selExp.getName()
+ I18n.get("uploadOk2")
+ BewConstants.USER
+ ".");
} else {
if (serverCode == 401) {
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("uploadBadLogin"));
} else if (serverCode == 500) {
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("uploadServerError"));
}
}
} else {
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("uploadIDError"));
}
} else {
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("uploadIDError"));
}
} catch (UnknownHostException e) {
// TODO Auto-generated catch block
e.printStackTrace();
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("webServicesConnection"));
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
ShowDialog.showError(I18n.get("updloadErrorTitle"), I18n.get("updloadError"));
}
}
/**
* Set the intraExperiment. Select the type of Method to create and add it.
*
* @param exp intraExperiment.
*/
@Port(direction = Direction.INPUT, name = "Select Experiment", order = 2)
public void selectExp(Experiment exp) {
AddingElementDialog aed = null;
AbstractMethodSheetConfigurator dsc;
// If null, we have to create a new method
if (method == null) {
aed = new AddingElementDialog(new CreateMethodSheetConfigurator(), exp);
aed.setVisible(true);
dsc = (CreateMethodSheetConfigurator) aed.getSheet();
}
// Else, we copy a created method
else {
List<String> condNames = new ArrayList<String>();
List<Integer> condValues = new ArrayList<Integer>();
List<String> condUnits = new ArrayList<String>();
for (Condition c : method.getArrayCondition().getElements()) {
condNames.add(c.getName());
condValues.add(c.getConditionValues().size());
condUnits.add(c.getUnits());
}
// We introduce the default name
aed =
new AddingElementDialog(
new ImportMethodSheetConfigurator(
I18n.get("comboNameDefault"),
method.getUnits(),
FunctionConstants.dataToArray(method.conditionsToMatrix()),
condNames,
condValues,
condUnits,
condNames.size()),
exp);
aed.setVisible(true);
dsc = (ImportMethodSheetConfigurator) aed.getSheet();
}
// If the user want to create the method (accept button)
if (aed.isExit()) {
List<String> conditionNames = dsc.getConditionNames();
List<String> conditionUnits = dsc.getConditionUnits();
String[] names = new String[conditionNames.size()];
int i = 0;
for (String name : conditionNames) {
names[i] = name;
i++;
}
exp.addMetodo(
FunctionConstants.createMethod(
dsc.getSheetName(),
dsc.getUnits(),
dsc.getTableToObject(),
names,
conditionUnits.toArray(),
dsc.getNumConditions(),
exp));
}
}