@Override public double doOperation() throws OperatorFailedException { apspnet.beginNetworkEdit(); apspnet.moveLegs(); apspnet.endNetworkEdit(); return 0; }
@Override public double doOperation() throws OperatorFailedException { apspnet.beginNetworkEdit(); double b = (1.0 - scalingFactor) * (1.0 - scalingFactor) / scalingFactor; double c = scalingFactor / (1.0 - scalingFactor); double y = MathUtils.nextDouble(); double s = b * (y + c) * (y + c); int i = MathUtils.nextInt(apspnet.getNumberOfTetraTrees()); apspnet.setOneHybPopValue(i, s * apspnet.getOneHybPopValue(i)); apspnet.endNetworkEdit(); return 0.0; // this way of scaling, with proposal proportional to x^-(1/2) has hastings ratio 1 }