public void removeSelection() {
int[] selRows = dataTable.getSelectedRows();
Set<PartitionData> partitionsToRemove = new HashSet<PartitionData>();
for (int row : selRows) {
partitionsToRemove.add(options.dataPartitions.get(row));
}
// TODO: would probably be a good idea to check if the user wants to remove the last partition
options.dataPartitions.removeAll(partitionsToRemove);
// if (options.allowDifferentTaxa && options.dataPartitions.size() < 2) {
// uncheckAllowDifferentTaxa();
// }
if (options.getNonTraitsDataList().size() == 0) {
// all data partitions removed so reset the taxa
options.reset();
useStarBEASTCheck.setSelected(false);
frame.statusLabel.setText("");
frame.setAllOptions();
frame.getExportAction().setEnabled(false);
}
dataTableModel.fireTableDataChanged();
fireDataChanged();
}
public void removeSelection() {
int[] selRows = dataTable.getSelectedRows();
Set<AbstractPartitionData> partitionsToRemove = new HashSet<AbstractPartitionData>();
for (int row : selRows) {
partitionsToRemove.add(options.dataPartitions.get(row));
}
boolean hasIdenticalTaxa =
options.hasIdenticalTaxa(); // need to check this before removing partitions
// TODO: would probably be a good idea to check if the user wants to remove the last partition
options.dataPartitions.removeAll(partitionsToRemove);
if (options.dataPartitions.size() == 0) {
// all data partitions removed so reset the taxa
options.reset();
useStarBEASTCheck.setSelected(false);
frame.setupStarBEAST(false);
frame.statusLabel.setText("");
frame.setAllOptions();
frame.getExportAction().setEnabled(false);
} else if (!hasIdenticalTaxa) {
options.updateTaxonList();
}
dataTableModel.fireTableDataChanged();
fireDataChanged();
}
public void unlinkTrees() { // reuse previous PartitionTreePrior
int[] selRows = dataTable.getSelectedRows();
for (int row : selRows) {
PartitionData partition = options.dataPartitions.get(row);
PartitionTreeModel model = partition.getPartitionTreeModel();
if (!model.getName().equals(partition.getName())
&& partition.getTraitType() == null) { // not a trait
PartitionTreeModel newTree = new PartitionTreeModel(options, partition);
// this prevents partition not broken, and used for unsharing tree prior only,
// because sharing uses shareSameTreePrior, unsharing uses getPartitionTreePrior
// newTree.setPartitionTreePrior(newPrior); // important
partition.setPartitionTreeModel(newTree);
}
}
options.linkTreePriors(frame.getCurrentPartitionTreePrior());
modelsChanged();
fireDataChanged();
options.taxonSets.clear();
options.taxonSetsMono.clear();
repaint();
}
private void fireDataChanged() {
// options.updateLinksBetweenPDPCMPSMPTMPTPP();
options.updatePartitionAllLinks();
if (!(options.clockModelOptions.getRateOptionClockModel() == FixRateType.TIP_CALIBRATED
|| options.clockModelOptions.getRateOptionClockModel() == FixRateType.NODE_CALIBRATED
|| options.clockModelOptions.getRateOptionClockModel() == FixRateType.RATE_CALIBRATED)) {
// TODO correct?
options.clockModelOptions.fixRateOfFirstClockPartition();
}
frame.setDirty();
}
public void selectionChanged() {
int[] selRows = dataTable.getSelectedRows();
boolean hasSelection = (selRows != null && selRows.length != 0);
frame.dataSelectionChanged(hasSelection);
boolean canUnlink = options.dataPartitions.size() > 1 && hasSelection;
boolean canLink = options.dataPartitions.size() > 1 && hasSelection && selRows.length > 1;
unlinkModelsAction.setEnabled(canUnlink);
linkModelsAction.setEnabled(canLink);
unlinkClocksAction.setEnabled(canUnlink);
linkClocksAction.setEnabled(canLink);
unlinkTreesAction.setEnabled(canUnlink);
linkTreesAction.setEnabled(canLink);
}
public void fireModelChanged() {
frame.setDirty();
}
public void createFromTraits() {
frame.createImportTraits();
dataTableModel.fireTableDataChanged();
}
private void fireDataChanged() {
options.updatePartitionAllLinks();
frame.setDirty();
}