public boolean createFromTraits(List<TraitData> traits) {
int selRow = -1;
if (selectTraitDialog == null) {
selectTraitDialog = new SelectTraitDialog(frame);
}
if (traits == null || traits.size() == 0) {
int result = selectTraitDialog.showDialog(options.traits, null);
if (result != JOptionPane.CANCEL_OPTION) {
TraitData trait = selectTraitDialog.getTrait();
String name = trait.getName();
if (selectTraitDialog.getMakeCopy()) {
name = selectTraitDialog.getName();
}
selRow = options.createPartitionForTraits(name, trait);
} else {
return false;
}
} else {
if (traits.size() > 1) {
// a set of traits have been passed to the function
int result = selectTraitDialog.showDialog(null, null);
if (result != JOptionPane.CANCEL_OPTION) {
String name = selectTraitDialog.getName();
selRow = options.createPartitionForTraits(name, traits);
} else {
return false;
}
} else {
selRow = options.createPartitionForTraits(traits.get(0).getName(), traits);
}
}
modelsChanged();
dataTableModel.fireTableDataChanged();
if (selRow != -1) {
dataTable.getSelectionModel().setSelectionInterval(selRow, selRow);
}
fireDataChanged();
repaint();
return true;
}
public DataPanel(
BeautiFrame parent,
Action importDataAction,
Action removeDataAction /*, Action importTraitsAction*/) {
this.frame = parent;
dataTableModel = new DataTableModel();
dataTable = new JTable(dataTableModel);
dataTable.getTableHeader().setReorderingAllowed(false);
dataTable
.getTableHeader()
.setDefaultRenderer(new HeaderRenderer(SwingConstants.LEFT, new Insets(0, 4, 0, 4)));
TableColumn col = dataTable.getColumnModel().getColumn(5);
ComboBoxRenderer comboBoxRenderer = new ComboBoxRenderer();
comboBoxRenderer.putClientProperty("JComboBox.isTableCellEditor", Boolean.TRUE);
col.setCellRenderer(comboBoxRenderer);
// col = dataTable.getColumnModel().getColumn(5);
// comboBoxRenderer = new ComboBoxRenderer();
// comboBoxRenderer.putClientProperty("JComboBox.isTableCellEditor", Boolean.TRUE);
// col.setCellRenderer(comboBoxRenderer);
col = dataTable.getColumnModel().getColumn(6);
comboBoxRenderer = new ComboBoxRenderer();
comboBoxRenderer.putClientProperty("JComboBox.isTableCellEditor", Boolean.TRUE);
col.setCellRenderer(comboBoxRenderer);
col = dataTable.getColumnModel().getColumn(7);
comboBoxRenderer = new ComboBoxRenderer();
comboBoxRenderer.putClientProperty("JComboBox.isTableCellEditor", Boolean.TRUE);
col.setCellRenderer(comboBoxRenderer);
TableEditorStopper.ensureEditingStopWhenTableLosesFocus(dataTable);
dataTable
.getSelectionModel()
.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(ListSelectionEvent evt) {
selectionChanged();
}
});
dataTable.addMouseListener(
new MouseAdapter() {
public void mouseClicked(MouseEvent e) {
if (e.getClickCount() == 2) {
showAlignment();
}
}
});
scrollPane =
new JScrollPane(
dataTable,
JScrollPane.VERTICAL_SCROLLBAR_ALWAYS,
JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
scrollPane.setOpaque(false);
JToolBar toolBar1 = new JToolBar();
toolBar1.setFloatable(false);
toolBar1.setOpaque(false);
toolBar1.setLayout(new BoxLayout(toolBar1, BoxLayout.X_AXIS));
JButton button = new JButton(unlinkModelsAction);
unlinkModelsAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
button = new JButton(linkModelsAction);
linkModelsAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
toolBar1.addSeparator();
button = new JButton(unlinkClocksAction);
unlinkClocksAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
button = new JButton(linkClocksAction);
linkClocksAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
toolBar1.addSeparator();
button = new JButton(unlinkTreesAction);
unlinkTreesAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
button = new JButton(linkTreesAction);
linkTreesAction.setEnabled(false);
PanelUtils.setupComponent(button);
toolBar1.add(button);
// too crowded on the toolbar - just double click to show
// button = new JButton(showAction);
// showAction.setEnabled(false);
// PanelUtils.setupComponent(button);
// toolBar1.add(button);
ActionPanel actionPanel1 = new ActionPanel(false);
actionPanel1.setAddAction(importDataAction);
actionPanel1.setRemoveAction(removeDataAction);
removeDataAction.setEnabled(false);
JPanel controlPanel1 = new JPanel(new FlowLayout(FlowLayout.LEFT));
controlPanel1.setOpaque(false);
controlPanel1.add(actionPanel1);
controlPanel1.add(new JLabel(" "));
PanelUtils.setupComponent(createImportTraitButton);
controlPanel1.add(createImportTraitButton);
// controlPanel1.add(new JLabel(" or "));
//
// button = new JButton(importTraitsAction);
// PanelUtils.setupComponent(button);
// controlPanel1.add(button);
JPanel panel1 = new JPanel(new BorderLayout());
panel1.setOpaque(false);
panel1.add(useStarBEASTCheck, BorderLayout.NORTH);
panel1.add(toolBar1, BorderLayout.SOUTH);
setOpaque(false);
setBorder(new BorderUIResource.EmptyBorderUIResource(new Insets(12, 12, 12, 12)));
setLayout(new BorderLayout(0, 0));
add(panel1, BorderLayout.NORTH);
add(scrollPane, BorderLayout.CENTER);
add(controlPanel1, BorderLayout.SOUTH);
useStarBEASTCheck.setEnabled(false);
useStarBEASTCheck.setToolTipText(STARBEASTOptions.CITATION);
useStarBEASTCheck.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(
ActionEvent e) { // wrong listener Issue 397: *BEAST in BEAUti is broken
frame.setupStarBEAST(useStarBEASTCheck.isSelected());
dataTableModel.fireTableDataChanged();
}
});
}