public void removeSelection() {
int[] selRows = dataTable.getSelectedRows();
Set<PartitionData> partitionsToRemove = new HashSet<PartitionData>();
for (int row : selRows) {
partitionsToRemove.add(options.dataPartitions.get(row));
}
// TODO: would probably be a good idea to check if the user wants to remove the last partition
options.dataPartitions.removeAll(partitionsToRemove);
// if (options.allowDifferentTaxa && options.dataPartitions.size() < 2) {
// uncheckAllowDifferentTaxa();
// }
if (options.getNonTraitsDataList().size() == 0) {
// all data partitions removed so reset the taxa
options.reset();
useStarBEASTCheck.setSelected(false);
frame.statusLabel.setText("");
frame.setAllOptions();
frame.getExportAction().setEnabled(false);
}
dataTableModel.fireTableDataChanged();
fireDataChanged();
}
public void removeSelection() {
int[] selRows = dataTable.getSelectedRows();
Set<AbstractPartitionData> partitionsToRemove = new HashSet<AbstractPartitionData>();
for (int row : selRows) {
partitionsToRemove.add(options.dataPartitions.get(row));
}
boolean hasIdenticalTaxa =
options.hasIdenticalTaxa(); // need to check this before removing partitions
// TODO: would probably be a good idea to check if the user wants to remove the last partition
options.dataPartitions.removeAll(partitionsToRemove);
if (options.dataPartitions.size() == 0) {
// all data partitions removed so reset the taxa
options.reset();
useStarBEASTCheck.setSelected(false);
frame.setupStarBEAST(false);
frame.statusLabel.setText("");
frame.setAllOptions();
frame.getExportAction().setEnabled(false);
} else if (!hasIdenticalTaxa) {
options.updateTaxonList();
}
dataTableModel.fireTableDataChanged();
fireDataChanged();
}
public void setOptions(BeautiOptions options) {
this.options = options;
modelsChanged();
useStarBEASTCheck.setEnabled(
options.getNonTraitsDataList().size() > 0); // single partition is allowed
createImportTraitButton.setEnabled(options.getNonTraitsDataList().size() > 0);
dataTableModel.fireTableDataChanged();
}
public void setOptions(BeautiOptions options) {
this.options = options;
modelsChanged();
boolean taxaAvailable = options.taxonList != null && options.taxonList.getTaxonCount() > 0;
boolean traitAvailable =
options.traits != null && options.traits.size() > 0 && (!options.useStarBEAST);
useStarBEASTCheck.setEnabled(taxaAvailable);
createTraitPartitionAction.setEnabled(traitAvailable);
dataTableModel.fireTableDataChanged();
}
public boolean createFromTraits(List<TraitData> traits) {
int selRow = -1;
if (selectTraitDialog == null) {
selectTraitDialog = new SelectTraitDialog(frame);
}
if (traits == null || traits.size() == 0) {
int result = selectTraitDialog.showDialog(options.traits, null);
if (result != JOptionPane.CANCEL_OPTION) {
TraitData trait = selectTraitDialog.getTrait();
String name = trait.getName();
if (selectTraitDialog.getMakeCopy()) {
name = selectTraitDialog.getName();
}
selRow = options.createPartitionForTraits(name, trait);
} else {
return false;
}
} else {
if (traits.size() > 1) {
// a set of traits have been passed to the function
int result = selectTraitDialog.showDialog(null, null);
if (result != JOptionPane.CANCEL_OPTION) {
String name = selectTraitDialog.getName();
selRow = options.createPartitionForTraits(name, traits);
} else {
return false;
}
} else {
selRow = options.createPartitionForTraits(traits.get(0).getName(), traits);
}
}
modelsChanged();
dataTableModel.fireTableDataChanged();
if (selRow != -1) {
dataTable.getSelectionModel().setSelectionInterval(selRow, selRow);
}
fireDataChanged();
repaint();
return true;
}
public void createFromTraits() {
frame.createImportTraits();
dataTableModel.fireTableDataChanged();
}