void add(ReadGroupStats stats) {
mLengthDist.add(stats.mLengthDist);
mFragmentSizeDist.add(stats.mFragmentSizeDist);
mGapSizeDist.add(stats.mGapSizeDist);
mMaxAlignment = Math.max(mMaxAlignment, stats.mMaxAlignment);
mProper += stats.mProper;
mDiscordant += stats.mDiscordant;
mUnmated += stats.mUnmated;
if (detectOverflow()) {
throw new NoTalkbackSlimException(
"Overflow detected in read group statistics calculation for read group: " + id());
}
}
void addGapSize(int value) {
mGapSizeDist.add(value);
}
void addFragmentSize(int value) {
mFragmentSizeDist.add(value);
}
void addLength(int readlen) {
mLengthDist.add(readlen);
}
