protected void doSomethingWithDicomFileOnMedia(String mediaFileName) {
// logLn("OurFirstPassMediaImporter.doSomethingWithDicomFile(): "+mediaFileName);
try {
DicomInputStream i = new DicomInputStream(new File(mediaFileName));
AttributeList list = new AttributeList();
list.read(i);
i.close();
String sopInstanceUID =
Attribute.getSingleStringValueOrEmptyString(list, TagFromName.SOPInstanceUID);
if (sopInstanceUID.length() > 0) {
String studyInstanceUID =
Attribute.getSingleStringValueOrEmptyString(list, TagFromName.StudyInstanceUID);
if (studyInstanceUID.length() > 0) {
mapOfSOPInstanceUIDToStudyInstanceUID.put(sopInstanceUID, studyInstanceUID);
} else {
throw new DicomException("Missing StudyInstanceUID");
}
{
CompositeInstanceContext cic = new CompositeInstanceContext(list, false /*forSR*/);
// remove all except patient context ...
cic.removeStudy();
cic.removeSeries();
cic.removeEquipment();
cic.removeFrameOfReference();
cic.removeInstance();
cic.removeSRDocumentGeneral();
Group group = addToGroups(list);
// System.err.println("group = "+group);
mergePatientContext(group, cic);
}
} else {
throw new DicomException("Missing SOPInstanceUID");
}
} catch (Exception e) {
logLn("Error: File " + mediaFileName + " exception " + e);
}
}
