/** Parse a line from a serialized file */
@SuppressWarnings("unchecked")
@Override
public void serializeParse(MarkerSerializer markerSerializer) {
super.serializeParse(markerSerializer);
Markers markers = markerSerializer.getNextFieldMarkers();
for (Marker m : markers) add((T) m);
}
@SuppressWarnings("unchecked")
@Override
public IntervalAndSubIntervals<T> clone() {
IntervalAndSubIntervals<T> copy = (IntervalAndSubIntervals<T>) super.clone();
copy.reset();
for (T m : this) {
T mcopy = (T) m.clone();
mcopy.setParent(copy);
copy.add(mcopy);
}
return copy;
}
/** Apply a variant. */
@Override
@SuppressWarnings("unchecked")
public IntervalAndSubIntervals<T> apply(Variant variant) {
if (!shouldApply(variant)) return this;
IntervalAndSubIntervals<T> newMarker = (IntervalAndSubIntervals<T>) super.apply(variant);
if (newMarker == null) return null;
newMarker.reset();
for (T m : this) {
T mcopy = (T) m.apply(variant);
// Do not add if interval is completely removed
if (mcopy != null) {
mcopy.setParent(newMarker);
newMarker.add(mcopy);
}
}
return newMarker;
}
/** Add all markers */
@SuppressWarnings("unchecked")
public void addAll(Markers markers) {
for (Marker m : markers) add((T) m);
invalidateSorted();
}
/** Add all intervals */
public void addAll(Iterable<T> ts) {
for (T t : ts) add(t);
invalidateSorted();
}