RotamerPairEntry swappedCopy() {
RotamerPairEntry re = new RotamerPairEntry(pos2, r2.copy(), pos1, r1.copy());
re.setMinE(minE());
// re.setMaxE(maxE(false));
re.setPruned(isPruned());
// re.setPrunedIsSteric(prunedIsSteric());
return re;
}
// This doesn't create a valid energy so we make it infinity to make sure it is reset
RotamerPairEntry combine(RotamerEntry re, int posToMerge) {
RotamerPairEntry retRE = this.copy();
SuperRotamer r1ToMerge = null;
SuperRotamer r2ToMerge = null;
if (posToMerge == 1) {
r1ToMerge = retRE.r1;
r2ToMerge = re.r;
} else if (posToMerge == 2) {
r1ToMerge = retRE.r2;
r2ToMerge = re.r;
}
r1ToMerge.combine(r2ToMerge);
retRE.setMinE(Double.NEGATIVE_INFINITY);
// retRE.setMaxE(retRE.maxE(false) + re.maxE(false));
retRE.setPruned(isPruned());
// retRE.setPrunedIsSteric(prunedIsSteric() || re.prunedIsSteric());
return retRE;
}
