/** * Builds a toolbar button. * * @param imageResource the button's icon * @param title the button's tooltip text * @param command the command to execute * @return a toolbar button */ private Widget buildButton(ImageResource imageResource, String title, final Command command) { final PushButton btn = new PushButton(new Image(imageResource)); btn.setTitle(title); btn.addClickHandler( new ClickHandler() { public void onClick(ClickEvent event) { btn.setFocus(false); btn.removeStyleName("gwt-ToggleButton-up-hovering"); command.execute(); } }); buttons.add(btn); return btn; }
/** * Prepares the widgets from the items as A FORM FOR SETTINGS * * @param items */ public void prepareSettings(final ArrayList<ApplicationFormItem> items) { // refresh table events final JsonCallbackEvents refreshEvents = new JsonCallbackEvents() { public void onFinished(JavaScriptObject jso) { prepareSettings(items); } }; FlexTable ft = new FlexTable(); ft.addStyleName("borderTable"); ft.setWidth("100%"); ft.setCellPadding(8); FlexCellFormatter fcf = ft.getFlexCellFormatter(); ft.setHTML(0, 0, "<strong>Short name</strong>"); ft.setHTML(0, 1, "<strong>Type</strong>"); ft.setHTML(0, 2, "<strong>Preview</strong>"); ft.setHTML(0, 3, "<strong>Edit</strong>"); fcf.setStyleName(0, 0, "GPBYFDEFD"); fcf.setStyleName(0, 1, "GPBYFDEFD"); fcf.setStyleName(0, 2, "GPBYFDEFD"); fcf.setStyleName(0, 3, "GPBYFDEFD"); String locale = "en"; if (LocaleInfo.getCurrentLocale().getLocaleName().equals("default") || LocaleInfo.getCurrentLocale().getLocaleName().equals("en")) { locale = "en"; } else { locale = "cs"; } int i = 1; for (final ApplicationFormItem item : items) { final int index = i - 1; // not yet set locale on config page RegistrarFormItemGenerator gen = new RegistrarFormItemGenerator(item, locale); // 0 = label String label = ""; if (gen.isLabelShown()) { label = item.getShortname(); } if (item.isRequired() == true) { label += "*"; } ft.setHTML(i, 0, label); // 1 = type ft.setHTML(i, 1, item.getType()); // 2 = preview Widget w = gen.getWidget(); ft.setWidget(i, 2, w); // 3 = EDIT FlexTable editTable = new FlexTable(); editTable.setStyleName("noBorder"); ft.setWidget(i, 3, editTable); // color for items with unsaved changes if (item.wasEdited() == true) { ft.getFlexCellFormatter().setStyleName(i, 0, "log-changed"); ft.getFlexCellFormatter().setStyleName(i, 1, "log-changed"); ft.getFlexCellFormatter().setStyleName(i, 2, "log-changed"); ft.getFlexCellFormatter().setStyleName(i, 3, "log-changed"); } // mark row for deletion if (item.isForDelete()) { ft.getFlexCellFormatter().setStyleName(i, 0, "log-error"); ft.getFlexCellFormatter().setStyleName(i, 1, "log-error"); ft.getFlexCellFormatter().setStyleName(i, 2, "log-error"); ft.getFlexCellFormatter().setStyleName(i, 3, "log-error"); // undelete button CustomButton undelete = new CustomButton( ButtonTranslation.INSTANCE.undeleteFormItemButton(), ButtonTranslation.INSTANCE.undeleteFormItem(), SmallIcons.INSTANCE.arrowLeftIcon(), new ClickHandler() { public void onClick(ClickEvent event) { items.get(index).setForDelete(false); // refresh prepareSettings(items); } }); FlexTable undelTable = new FlexTable(); undelTable.setStyleName("noBorder"); undelTable.setHTML( 0, 0, "<strong><span style=\"color:red;\">MARKED FOR DELETION</span></strong>"); undelTable.setWidget(0, 1, undelete); ft.setWidget(i, 3, undelTable); } // color for new items to be saved if (item.getId() == 0) { ft.getFlexCellFormatter().setStyleName(i, 0, "log-success"); ft.getFlexCellFormatter().setStyleName(i, 1, "log-success"); ft.getFlexCellFormatter().setStyleName(i, 2, "log-success"); ft.getFlexCellFormatter().setStyleName(i, 3, "log-success"); } // up PushButton upButton = new PushButton( new Image(SmallIcons.INSTANCE.arrowUpIcon()), new ClickHandler() { public void onClick(ClickEvent event) { if (index - 1 < 0) return; // move it items.remove(index); items.add(index - 1, item); item.setOrdnum(item.getOrdnum() - 1); item.setEdited(true); // refresh prepareSettings(items); } }); editTable.setWidget(0, 0, upButton); upButton.setTitle(ButtonTranslation.INSTANCE.moveFormItemUp()); // down PushButton downButton = new PushButton( new Image(SmallIcons.INSTANCE.arrowDownIcon()), new ClickHandler() { public void onClick(ClickEvent event) { if (index + 1 >= items.size()) return; // move it items.remove(index); items.add(index + 1, item); item.setOrdnum(item.getOrdnum() + 1); item.setEdited(true); // refresh prepareSettings(items); } }); editTable.setWidget(0, 1, downButton); downButton.setTitle(ButtonTranslation.INSTANCE.moveFormItemDown()); // edit CustomButton editButton = new CustomButton( ButtonTranslation.INSTANCE.editFormItemButton(), ButtonTranslation.INSTANCE.editFormItem(), SmallIcons.INSTANCE.applicationFormEditIcon()); editButton.addClickHandler( new ClickHandler() { public void onClick(ClickEvent event) { session .getTabManager() .addTabToCurrentTab(new EditFormItemTabItem(item, refreshEvents)); } }); editTable.setWidget(0, 2, editButton); // remove CustomButton removeButton = new CustomButton( ButtonTranslation.INSTANCE.deleteButton(), ButtonTranslation.INSTANCE.deleteFormItem(), SmallIcons.INSTANCE.deleteIcon()); removeButton.addClickHandler( new ClickHandler() { public void onClick(ClickEvent event) { HTML text = new HTML( "<p>Deleting of form items is <strong>NOT RECOMMENDED!</strong><p>You will loose access to data users submitted in older applications within this form item!<p>Do you want to continue?"); Confirm c = new Confirm( "Delete confirm", text, new ClickHandler() { public void onClick(ClickEvent event) { // mark for deletion when save changes items.get(index).setForDelete(true); // remove if newly created if (items.get(index).getId() == 0) { items.remove(index); } // refresh prepareSettings(items); } }, true); c.setNonScrollable(true); c.show(); } }); editTable.setWidget(0, 3, removeButton); // format fcf.setHeight(i, 0, "28px"); fcf.setVerticalAlignment(i, 0, HasVerticalAlignment.ALIGN_MIDDLE); fcf.setVerticalAlignment(i, 1, HasVerticalAlignment.ALIGN_MIDDLE); fcf.setVerticalAlignment(i, 2, HasVerticalAlignment.ALIGN_MIDDLE); i++; } contents.setWidget(ft); }
public SimpleParamsEditorPanel( final ServiceAsync serviceAsync, final HidesPageContentsWhileLoading contentsHiding, Map<String, ClientUser> userInfo) { this.serviceAsync = serviceAsync; this.userInfo = userInfo; selectionController = new ParamSetSelectionController(serviceAsync); selectionController.setContentsHiding(contentsHiding); validationController = new ValidationController(serviceAsync, selectionController); validationController.setContentsHiding(contentsHiding); editorElements = new ArrayList(); contentsHiding.hidePageContentsWhileLoading(); serviceAsync.login( "", "", new AsyncCallback<Boolean>() { // TODO: real login public void onFailure(Throwable caught) { contentsHiding.showPageContents(); handleGlobalError(caught); } public void onSuccess(Boolean result) { contentsHiding.showPageContentsAfterLoad(); } }); HorizontalPanel hp = new HorizontalPanel(); RootPanel paramsSelectorPanel = RootPanel.get("paramsSelector"); paramsSelectorPanel.add(hp); selector = new ParamsSelector(); selectionController.setSelector(selector); selectionController.refresh(); hp.add(selector); // save buttons ////////////////////////////////////////////////////////// PushButton button; hp.add(saveButton = new PushButton("Save...")); saveButton.addStyleName(ACTION_LINK); saveButton.addStyleName(SPACE_AFTER); saveButton.addClickListener( new ClickListener() { public void onClick(Widget widget) { save(); } }); saveButton.setVisible(editorVisible); buttons.add(saveButton); hp.add(button = new PushButton("Preview...")); button.addStyleName(ACTION_LINK); button.addStyleName(SPACE_AFTER); button.addClickListener( new ClickListener() { public void onClick(Widget widget) { preview(); } }); buttons.add(button); hp.add(deleteButton = new PushButton("Delete...")); deleteButton.addStyleName(ACTION_LINK); deleteButton.addStyleName(SPACE_AFTER); deleteButton.addClickListener( new ClickListener() { public void onClick(Widget widget) { delete(); } }); buttons.add(deleteButton); // description, initially hidden ///////////////////////////////////////////// HTMLPanel description; paramsSelectorPanel.add( description = new HTMLPanel("<I>This is a description of the ParameterSet.</I>")); description.setSize("500px", "50px"); description.setStyleName("dottedBorder"); description.setVisible(false); /// Existing DOM ////////////////////////////////////////////////////////////// // Grab the existing DOM for the parameter rows. ExistingDOMPanel edp = new ExistingDOMPanel("paramRow"); /// database /////////////////////////////////////////// { ExistingDOMPanel dbrow = new ExistingDOMPanel("paramDbRow"); Label label = new Label("Database:"); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); editorElements.add(dbrow.append("database", "paramDbLabel", label, editorVisible)); final ValidationPanel vp = new ValidationPanel(2); dlb = new DatabaseListBox("sequence.database", userInfo); final HorizontalPanel p = new HorizontalPanel(); p.add(dlb); // dlb.setStyleName("spaceAfter"); PushButton pb = new PushButton("Add or Review Database..."); pb.addStyleName(ACTION_LINK); pb.setTitle( "Click here to review the selected database and potentially modify it for your own needs."); pb.addClickListener( new ClickListener() { public void onClick(Widget widget) { popupDbCurator(); } }); validationController.add(dlb, "sequence.database", vp); p.add(pb); // Add undeployer link if enabled. serviceAsync.isDatabaseUndeployerEnabled( new AsyncCallback<Boolean>() { public void onFailure(Throwable caught) { // Do nothing, do not add undeploy link. throw new RuntimeException( "Can not determine if database undeployer is enabled", caught); } public void onSuccess(Boolean result) { if (result.booleanValue()) { PushButton du = new PushButton("Undeploy Database"); du.addStyleName(ACTION_LINK); du.setTitle("Click here to undeploy database from search engines."); du.addClickListener(new DatabaseUndeploymentAction(serviceAsync, dlb)); p.add(du); } } }); editorElements.add(dbrow.append("database", "paramDbEntry", p, editorVisible)); editorElements.add(dbrow.append("database", "paramDbValidation", vp, editorVisible)); } /// enzyme ///////////////////////////////////////////// { Label label = new Label("Protease:"); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); editorElements.add(edp.append("enzyme", LABEL1, label, editorVisible)); ValidationPanel vp = new ValidationPanel(2); ProteaseListBox tb; validationController.add(tb = new ProteaseListBox("sequence.enzyme"), "sequence.enzyme", vp); editorElements.add(edp.append("enzyme", ENTRY1, tb, editorVisible)); Label label1 = new Label("Missed Cleavages:"); label1.setStyleName(PARAMS_LABEL); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); ValidatableTextBox tdb = new ValidatableTextBox("sequence.missed_cleavages") { protected ClientValue getValueFromString(String value) { if ((value == null) || (value.length() == 0)) { return null; } try { return new ClientInteger(value); } catch (NumberFormatException ignore) { ClientValidationList list = new ClientValidationList(); final ClientValidation cv = new ClientValidation( "Not a number: " + value, "sequence.missed_cleavages", ClientValidation.SEVERITY_ERROR); list.add(cv); validationController.update("sequence.missed_cleavages", list); return null; } } protected String setValueAsString(ClientValue object) { return object.toString(); } public void setAllowedValues(List<? extends ClientValue> values) { // unused. } public String getAllowedValuesParam() { return null; // no allowed values. } }; tdb.setVisibleLength(5); editorElements.add(edp.append("enzyme", LABEL2, label1, editorVisible)); editorElements.add(edp.append("enzyme", ENTRY2, tdb, editorVisible)); validationController.add(tdb, "sequence.missed_cleavages", vp); editorElements.add(edp.append("enzyme", VALIDATION, vp, editorVisible)); } /// modifications ///////////////////////////////////////// { ValidationPanel vp = new ValidationPanel(2); Label label = new Label("Fixed Modifications:"); label.setStyleName(PARAMS_LABEL); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(MODIFICATIONS, LABEL1, label, editorVisible)); // fixed mods label fixedMods = new ModificationsLabel( ModificationSelectionEditor.FIXED_PARAM_NAME, ModificationSelectionEditor.FIXED_PARAM_NAME); ModificationSelectionEditor fixedModsEditor = new ModificationSelectionEditor( ModificationSelectionEditor.FIXED_PARAM_NAME, ModificationSelectionEditor.FIXED_MOD_TYPE); fixedMods.setEditor(fixedModsEditor); validationController.add(fixedMods, ModificationSelectionEditor.FIXED_PARAM_NAME, vp); editorElements.add(edp.append(MODIFICATIONS, ENTRY1, fixedMods, editorVisible)); // variable mods label varMods = new ModificationsLabel( ModificationSelectionEditor.VARIABLE_PARAM_NAME, ModificationSelectionEditor.VARIABLE_PARAM_NAME); ModificationSelectionEditor varModsEditor = new ModificationSelectionEditor( ModificationSelectionEditor.VARIABLE_PARAM_NAME, ModificationSelectionEditor.VARIABLE_MOD_TYPE); varMods.setEditor(varModsEditor); validationController.add(varMods, ModificationSelectionEditor.VARIABLE_PARAM_NAME, vp); Label label1 = new Label("Variable Modifications:"); label1.setStyleName(PARAMS_LABEL); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(MODIFICATIONS, LABEL2, label1, editorVisible)); editorElements.add(edp.append(MODIFICATIONS, ENTRY2, varMods, editorVisible)); editorElements.add(edp.append(MODIFICATIONS, VALIDATION, vp, editorVisible)); } /// tolerances ///////////////////////////////////////// { Label label = new Label("Peptide Tolerance:"); label.setStyleName(PARAMS_LABEL); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(TOLERANCES, LABEL1, label, editorVisible)); ValidationPanel vp = new ValidationPanel(2); ToleranceBox peptideTolerance; validationController.add( peptideTolerance = new ToleranceBox("tolerance.peptide"), "tolerance.peptide", vp); editorElements.add(edp.append(TOLERANCES, ENTRY1, peptideTolerance, editorVisible)); Label label1 = new Label("Fragment Tolerance:"); editorElements.add(edp.append(TOLERANCES, LABEL2, label1, editorVisible)); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label1.setStyleName(PARAMS_LABEL); ToleranceBox fragmentTolerance; validationController.add( fragmentTolerance = new ToleranceBox("tolerance.fragment"), "tolerance.fragment", vp); editorElements.add(edp.append(TOLERANCES, ENTRY2, fragmentTolerance, editorVisible)); editorElements.add(edp.append(TOLERANCES, VALIDATION, vp, editorVisible)); } /// instrument ///////////////////////////////////////// ValidationPanel instrumentVp; { Label label = new Label("Instrument:"); editorElements.add(edp.append(INSTRUMENT, LABEL1, label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); instrumentVp = new ValidationPanel(2); InstrumentListBox lb; validationController.add(lb = new InstrumentListBox(INSTRUMENT), INSTRUMENT, instrumentVp); editorElements.add(edp.append(INSTRUMENT, ENTRY1, lb, editorVisible)); editorElements.add(edp.append(INSTRUMENT, VALIDATION, instrumentVp, editorVisible)); } /// spectrum extraction params ///////////////////////////////////////// { Label label = new Label("Spectrum extraction:"); editorElements.add(edp.append(INSTRUMENT, LABEL2, label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); SpectrumExtractionEditor ed = new SpectrumExtractionEditor(); validationController.add(ed, "extractMsnSettings", instrumentVp); editorElements.add(edp.append(INSTRUMENT, ENTRY2, ed, editorVisible)); } /// scaffold params ///////////////////////////////////////// { ExistingDOMPanel row = new ExistingDOMPanel("scaffoldRow"); Label label = new Label("Scaffold:"); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldLabel", label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); ValidationPanel vp = new ValidationPanel(2); ScaffoldSettingsEditor ed = new ScaffoldSettingsEditor(); validationController.add(ed, SCAFFOLD_SETTINGS, vp); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldEntry", ed, editorVisible)); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldValidation", vp, editorVisible)); } validationController.setEnabled(false); selectionController.refresh(); validationController.addChangeListener( new ChangeListener() { public void onChange(Widget widget) { for (PushButton button : buttons) { button.setEnabled(isValid()); } } }); }