public static int addCosmic(CosmicMutationFrequency cosmic) throws DaoException {
if (!MySQLbulkLoader.isBulkLoad()) {
throw new DaoException("You have to turn on MySQLbulkLoader in order to insert mutations");
} else {
// use this code if bulk loading
// write to the temp file maintained by the MySQLbulkLoader
MySQLbulkLoader.getMySQLbulkLoader("cosmic_mutation")
.insertRecord(
cosmic.getId(),
cosmic.getChr(),
Long.toString(cosmic.getStartPosition()),
cosmic.getReferenceAllele(),
cosmic.getTumorSeqAllele(),
cosmic.getStrand(),
cosmic.getCds(),
Long.toString(cosmic.getEntrezGeneId()),
cosmic.getAminoAcidChange(),
Integer.toString(cosmic.getFrequency()),
cosmic.getKeyword());
return 1;
}
}
