示例#1
0
 /** Walk all the included declarations and accumulate the set of referenced groups */
 protected void computegroups() {
   // 1. variables
   for (int i = 0; i < variables.size(); i++) {
     DapVariable var = variables.get(i);
     List<DapGroup> path = var.getGroupPath();
     for (DapGroup group : path) {
       if (!this.groups.contains(group)) this.groups.add(group);
     }
   }
   // 2. Dimensions
   for (DapDimension dim : this.dimrefs) {
     if (!dim.isShared()) continue;
     List<DapGroup> path = dim.getGroupPath();
     for (DapGroup group : path) {
       if (!this.groups.contains(group)) this.groups.add(group);
     }
   }
   // 2. enumerations
   for (DapEnum en : this.enums) {
     List<DapGroup> path = en.getGroupPath();
     for (DapGroup group : path) {
       if (!this.groups.contains(group)) this.groups.add(group);
     }
   }
 }
示例#2
0
 /** Walk all the included variables and accumulate the referenced enums */
 protected void computeenums() {
   for (int i = 0; i < variables.size(); i++) {
     DapVariable var = variables.get(i);
     if (var.getSort() != DapSort.ATOMICVARIABLE) continue;
     DapType daptype = var.getBaseType();
     if (!daptype.isEnumType()) continue;
     if (!this.enums.contains((DapEnum) daptype)) this.enums.add((DapEnum) daptype);
   }
 }
示例#3
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 protected static Object fieldValue(DapSequence seq, DataRecord record, String field)
     throws DapException {
   DapVariable dapv = seq.findByName(field);
   if (dapv == null) throw new DapException("Unknown variable in filter: " + field);
   if (dapv.getSort() != DapSort.ATOMICVARIABLE)
     throw new DapException("Non-atomic variable in filter: " + field);
   if (dapv.getRank() > 0) throw new DapException("Non-scalar variable in filter: " + field);
   DataAtomic da = (DataAtomic) (record.readfield(field));
   if (da == null) throw new DapException("No such field: " + field);
   return da.read(0);
 }
示例#4
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 /**
  * Locate each Structure|Sequence and: 1. check that all of its fields are referenced recursively
  * and not constrained, otherwise ignore 2. contract by removing all of the fields of the
  * Structure or Sequence. This is intended to be (not quite) the dual of expand();
  */
 public void contract() {
   // Create a set of contracted compounds
   Set<DapStructure> contracted = new HashSet<>();
   for (int i = 0; i < variables.size(); i++) {
     DapVariable var = variables.get(i);
     if (var.isTopLevel()) {
       if (var.getSort() == DapSort.STRUCTURE || var.getSort() == DapSort.SEQUENCE) {
         contractR((DapStructure) var, contracted);
       }
     }
   }
   this.expansion = Expand.CONTRACTED;
 }
示例#5
0
 public void variable(DapVariable dapvar) throws DapException {
   writer.startVariable();
   if (dapvar.getSort() == DapSort.ATOMICVARIABLE) {
     atomicVariable((DapAtomicVariable) dapvar);
   } else if (dapvar.getSort() == DapSort.STRUCTURE) {
     structure((DapStructure) dapvar);
   } else if (dapvar.getSort() == DapSort.SEQUENCE) {
     sequence((DapSequence) dapvar);
   } else throw new DapException("generate var: not a variable:" + dapvar.getFQN());
   try {
     writer.endVariable();
   } catch (IOException ioe) {
     throw new DapException(ioe);
   }
 }
示例#6
0
 /**
  * Recursive helper
  *
  * @param dstruct to contract
  * @param contracted set of already contracted compounds
  * @return true if this structure was contracted, false otherwise
  */
 protected boolean contractR(DapStructure dstruct, Set<DapStructure> contracted) {
   if (contracted.contains(dstruct)) return true;
   int processed = 0;
   List<DapVariable> fields = dstruct.getFields();
   for (DapVariable field : fields) {
     if (findVariableIndex(field) < 0) break; // this compound cannot be contracted
     if ((field.getSort() == DapSort.STRUCTURE || field.getSort() == DapSort.SEQUENCE)
         && !contracted.contains((DapStructure) field)) {
       if (!contractR((DapStructure) field, contracted))
         break; // this compound cannot be contracted
     }
     processed++;
   }
   if (processed < fields.size()) return false;
   contracted.add(dstruct); // all compound fields were successfully contracted.
   return true;
 }
示例#7
0
  /**
   * Locate each unexpanded Structure|Sequence and: 1. check that none of its fields is referenced
   * => do not expand 2. add all of its fields as leaves Note that #2 may end up adding additional
   * leaf structs &/or seqs
   */
  public void expand() {
    // Create a queue of unprocessed leaf compounds
    Queue<DapVariable> queue = new ArrayDeque<DapVariable>();

    for (int i = 0; i < variables.size(); i++) {
      DapVariable var = variables.get(i);
      if (!var.isTopLevel()) continue;
      // prime the queue
      if (var.getSort() == DapSort.STRUCTURE || var.getSort() == DapSort.SEQUENCE) {
        DapStructure struct = (DapStructure) var; // remember Sequence subclass Structure
        if (expansionCount(struct) == 0) queue.add(var);
      }
    }
    // Process the queue in prefix order
    while (queue.size() > 0) {
      DapVariable vvstruct = queue.remove();
      DapStructure dstruct = (DapStructure) vvstruct;
      for (DapVariable field : dstruct.getFields()) {
        if (findVariableIndex(field) < 0) {
          // Add field as leaf
          this.segments.add(new Segment(field));
          this.variables.add(field);
        }
        if (field.getSort() == DapSort.STRUCTURE || field.getSort() == DapSort.SEQUENCE) {
          if (expansionCount((DapStructure) field) == 0) queue.add(field);
        }
      }
    }
    this.expansion = Expand.EXPANDED;
  }
示例#8
0
 public String toString() {
   StringBuilder buf = new StringBuilder();
   buf.append(var.getFQN());
   buf.append(slices.toString());
   if (this.filter != null) {
     buf.append("|");
     buf.append(filter.toString());
   }
   return buf.toString();
 }
示例#9
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 /**
  * See if a structure is "whole", which means that none of its fields is missing from the
  * constraint, all of fields use default (non-constrained) dimension), and all of its fields are
  * also whole. This must be done recursively.
  *
  * @param dstruct to test
  * @return true if this structure is whole.
  */
 protected boolean isWholeCompound(DapStructure dstruct) {
   int processed = 0;
   List<DapVariable> fields = dstruct.getFields();
   for (DapVariable field : fields) {
     // not contractable if this field has non-original dimensions
     Segment seg = findSegment(field);
     if (seg == null) break; // this compound is not whole
     List<Slice> slices = seg.slices;
     if (slices != null) {
       for (Slice slice : slices) {
         if (slice.isConstrained()) break;
       }
     }
     if (field.getSort() == DapSort.STRUCTURE || field.getSort() == DapSort.SEQUENCE) {
       if (!isWholeCompound((DapStructure) field)) break; // this compound is not whole
     }
     processed++;
   }
   return (processed == fields.size());
 }