/** @see {@link CohortService#voidCohort(Cohort,String)} */
@Test
@Verifies(value = "should fail if reason is null", method = "voidCohort(Cohort,String)")
public void voidCohort_shouldFailIfReasonIsNull() throws Exception {
executeDataSet(COHORT_XML);
// Get a non-voided, valid Cohort and try to void it with a null reason
Cohort exampleCohort = service.getCohort("Example Cohort");
assertNotNull(exampleCohort);
assertFalse(exampleCohort.isVoided());
try {
service.voidCohort(exampleCohort, null);
Assert.fail("voidCohort should fail with exception if reason is null.");
} catch (Exception e) {
}
// Now get the Cohort and try to void it with an empty reason
exampleCohort = service.getCohort("Example Cohort");
assertNotNull(exampleCohort);
assertFalse(exampleCohort.isVoided());
try {
service.voidCohort(exampleCohort, "");
Assert.fail("voidCohort should fail with exception if reason is empty");
} catch (Exception e) {
}
}
/** @see {@link CohortService#addPatientToCohort(Cohort,Patient)} */
@Test
@Verifies(
value = "should add a patient and save the cohort",
method = "addPatientToCohort(Cohort,Patient)")
public void addPatientToCohort_shouldAddAPatientAndSaveTheCohort() throws Exception {
executeDataSet(COHORT_XML);
// make a patient, add it using the method
Patient patientToAdd = new Patient(4);
service.addPatientToCohort(service.getCohort(2), patientToAdd);
// proof of "save the cohort": see if the patient is in the cohort
assertTrue(service.getCohort(2).contains(4));
}
/**
* @verifies {@link CohortService#removePatientFromCohort(Cohort,Patient)} test = should save
* cohort after removing patient
*/
@Test
@Verifies(
value = "should save cohort after removing patient",
method = "removePatientFromCohort(Cohort,Patient)")
public void removePatientFromCohort_shouldSaveCohortAfterRemovingPatient() throws Exception {
executeDataSet(COHORT_XML);
// make a patient, add it using the method
Patient patientToAddThenRemove = new Patient(4);
service.addPatientToCohort(service.getCohort(2), patientToAddThenRemove);
assertTrue(service.getCohort(2).contains(patientToAddThenRemove));
service.removePatientFromCohort(service.getCohort(2), patientToAddThenRemove);
assertFalse(service.getCohort(2).contains(patientToAddThenRemove));
}
/** @see {@link CohortService#saveCohort(Cohort)} */
@Test
@Verifies(value = "should update an existing cohort", method = "saveCohort(Cohort)")
public void saveCohort_shouldUpdateAnExistingCohort() throws Exception {
executeDataSet(COHORT_XML);
// get and modify a cohort in the data set
String modifiedCohortDescription = "This description has been modified in a test";
Cohort cohortToModify = service.getCohort(2);
cohortToModify.setDescription(modifiedCohortDescription);
// save the modified cohort back to the data set, see if the modification is there
service.saveCohort(cohortToModify);
assertTrue(service.getCohort(2).getDescription().equals(modifiedCohortDescription));
}
/** @see {@link CohortService#getCohortsContainingPatient(Patient)} */
@Test
@Verifies(
value = "should return cohorts that have given patient",
method = "getCohortsContainingPatient(Patient)")
public void getCohortsContainingPatient_shouldReturnCohortsThatHaveGivenPatient()
throws Exception {
executeDataSet(COHORT_XML);
Patient patientToAdd = new Patient(4);
service.addPatientToCohort(service.getCohort(2), patientToAdd);
assertTrue(service.getCohort(2).contains(patientToAdd));
List<Cohort> cohortsWithGivenPatient = service.getCohortsContainingPatient(patientToAdd);
assertTrue(cohortsWithGivenPatient.contains(service.getCohort(2)));
}
/** @see {@link CohortService#getCohort(String)} */
@Test
@Verifies(value = "should get cohort given a name", method = "getCohort(String)")
public void getCohort_shouldGetCohortGivenAName() throws Exception {
executeDataSet(COHORT_XML);
Cohort cohortToGet = service.getCohort("Example Cohort");
assertTrue(cohortToGet.getCohortId() == 2);
}
/** @see {@link CohortService#getCohort(Integer)} */
@Test
@Verifies(value = "should get cohort by id", method = "getCohort(Integer)")
public void getCohort_shouldGetCohortById() throws Exception {
executeDataSet(COHORT_XML);
Cohort cohortToGet = service.getCohort(2);
assertNotNull(cohortToGet);
assertTrue(cohortToGet.getCohortId() == 2);
}
/** @see {@link CohortService#addPatientToCohort(Cohort,Patient)} */
@Test
@Verifies(
value = "should not fail if cohort already contains patient",
method = "addPatientToCohort(Cohort,Patient)")
public void addPatientToCohort_shouldNotFailIfCohortAlreadyContainsPatient() throws Exception {
executeDataSet(COHORT_XML);
// make a patient, add it using the method
Patient patientToAdd = new Patient(4);
service.addPatientToCohort(service.getCohort(2), patientToAdd);
assertTrue(service.getCohort(2).contains(4));
// do it again to see if it fails
try {
service.addPatientToCohort(service.getCohort(2), patientToAdd);
} catch (Exception e) {
Assert.fail("addPatientToCohort(Cohort,Patient) fails when cohort already contains patient.");
}
}
/**
* @verifies {@link CohortService#removePatientFromCohort(Cohort,Patient)} test = should not fail
* if cohort does not contain patient
*/
@Test
@Verifies(
value = "should not fail if cohort doesn't contain patient",
method = "removePatientFromCohort(Cohort,Patient)")
public void removePatientFromCohort_shouldNotFailIfCohortDoesNotContainPatient()
throws Exception {
executeDataSet(COHORT_XML);
// make a patient
Patient patientToAddThenRemove = new Patient(4);
// verify that the patient is not already in the Cohort
assertFalse(service.getCohort(2).contains(patientToAddThenRemove));
// try to remove it from the cohort without failing
try {
service.removePatientFromCohort(service.getCohort(2), patientToAddThenRemove);
} catch (Exception e) {
Assert.fail(
"removePatientFromCohort(Cohort,Patient) should not fail if cohort doesn't contain patient");
}
}
/** @see {@link CohortService#getCohortsContainingPatient(Patient)} */
@Test
@Verifies(
value = "should not return voided cohorts",
method = "getCohortsContainingPatient(Patient)")
public void getCohortsContainingPatient_shouldNotReturnVoidedCohorts() throws Exception {
executeDataSet(COHORT_XML);
// make sure we have two cohorts, the first of which is voided
assertTrue(service.getCohort(1).isVoided());
assertFalse(service.getCohort(2).isVoided());
// add a patient to both cohorts
Patient patientToAdd = new Patient(4);
service.addPatientToCohort(service.getCohort(1), patientToAdd);
service.addPatientToCohort(service.getCohort(2), patientToAdd);
assertTrue(service.getCohort(1).contains(patientToAdd));
assertTrue(service.getCohort(2).contains(patientToAdd));
// call the method and it should not return the voided cohort
List<Cohort> cohortsWithPatientAdded = service.getCohortsContainingPatient(patientToAdd);
assertNotNull(cohortsWithPatientAdded);
assertFalse(cohortsWithPatientAdded.contains(service.getCohort(1)));
}
/** @see {@link CohortService#getCohort(String)} */
@Test
@Verifies(value = "should only get non voided cohorts by name", method = "getCohort(String)")
public void getCohort_shouldOnlyGetNonVoidedCohortsByName() throws Exception {
executeDataSet(COHORT_XML);
// make sure we have two cohorts with the same name and the first is voided
List<Cohort> allCohorts = service.getAllCohorts(true);
assertNotNull(allCohorts);
assertEquals(2, allCohorts.size());
assertTrue(allCohorts.get(0).isVoided());
assertFalse(allCohorts.get(1).isVoided());
// now do the actual test: getCohort by name and expect a non voided cohort
Cohort exampleCohort = service.getCohort("Example Cohort");
assertNotNull(exampleCohort);
assertEquals(2, exampleCohort.size());
assertFalse(exampleCohort.isVoided());
}
/** @see {@link CohortService#getCohort(String)} */
@Test
@Verifies(
value = "should get the nonvoided cohort if two exist with same name",
method = "getCohort(String)")
public void getCohort_shouldGetTheNonvoidedCohortIfTwoExistWithSameName() throws Exception {
executeDataSet(COHORT_XML);
// check to see if both cohorts have the same name and if one is voided
List<Cohort> allCohorts = service.getAllCohorts(true);
assertNotNull(allCohorts);
assertEquals(allCohorts.get(0).getName(), allCohorts.get(1).getName());
assertTrue(allCohorts.get(0).isVoided());
assertFalse(allCohorts.get(1).isVoided());
// the non-voided cohort should have an id of 2
assertTrue(allCohorts.get(1).getCohortId() == 2);
// ask for the cohort by name
Cohort cohortToGet = service.getCohort("Example Cohort");
// see if the non-voided one got returned
assertTrue(cohortToGet.getCohortId() == 2);
}