private boolean readData(boolean dump) throws IOException {
if (m_sourceReader == null) {
throw new IOException("No source has been specified");
}
boolean finished = false;
do {
String checked = getInstance(m_st);
if (checked == null) {
return false;
}
if (dump) {
dumpRow(checked);
}
m_rowBuffer.add(checked);
if (m_rowBuffer.size() == m_bufferSize) {
finished = true;
if (getRetrieval() == BATCH) {
m_rowBuffer.clear();
}
}
} while (!finished);
return true;
}
private void readHeader() throws IOException {
m_rowCount = 1;
m_incrementalReader = null;
m_current = new ArrayList<Object>();
openTempFiles();
m_rowBuffer = new ArrayList<String>();
String firstRow = m_sourceReader.readLine();
if (firstRow == null) {
throw new IOException("No data in the file!");
}
if (m_noHeaderRow) {
m_rowBuffer.add(firstRow);
}
ArrayList<Attribute> attribNames = new ArrayList<Attribute>();
// now tokenize to determine attribute names (or create att names if
// no header row
StringReader sr = new StringReader(firstRow + "\n");
// System.out.print(firstRow + "\n");
m_st = new StreamTokenizer(sr);
initTokenizer(m_st);
m_st.ordinaryChar(m_FieldSeparator.charAt(0));
int attNum = 1;
StreamTokenizerUtils.getFirstToken(m_st);
if (m_st.ttype == StreamTokenizer.TT_EOF) {
StreamTokenizerUtils.errms(m_st, "premature end of file");
}
boolean first = true;
boolean wasSep;
while (m_st.ttype != StreamTokenizer.TT_EOL && m_st.ttype != StreamTokenizer.TT_EOF) {
// Get next token
if (!first) {
StreamTokenizerUtils.getToken(m_st);
}
if (m_st.ttype == m_FieldSeparator.charAt(0) || m_st.ttype == StreamTokenizer.TT_EOL) {
wasSep = true;
} else {
wasSep = false;
String attName = null;
if (m_noHeaderRow) {
attName = "att" + attNum;
attNum++;
} else {
attName = m_st.sval;
}
attribNames.add(new Attribute(attName, (java.util.List<String>) null));
}
if (!wasSep) {
StreamTokenizerUtils.getToken(m_st);
}
first = false;
}
String relationName;
if (m_sourceFile != null) {
relationName = (m_sourceFile.getName()).replaceAll("\\.[cC][sS][vV]$", "");
} else {
relationName = "stream";
}
m_structure = new Instances(relationName, attribNames, 0);
m_NominalAttributes.setUpper(m_structure.numAttributes() - 1);
m_StringAttributes.setUpper(m_structure.numAttributes() - 1);
m_dateAttributes.setUpper(m_structure.numAttributes() - 1);
m_numericAttributes.setUpper(m_structure.numAttributes() - 1);
m_nominalVals = new HashMap<Integer, LinkedHashSet<String>>();
m_types = new TYPE[m_structure.numAttributes()];
for (int i = 0; i < m_structure.numAttributes(); i++) {
if (m_NominalAttributes.isInRange(i)) {
m_types[i] = TYPE.NOMINAL;
LinkedHashSet<String> ts = new LinkedHashSet<String>();
m_nominalVals.put(i, ts);
} else if (m_StringAttributes.isInRange(i)) {
m_types[i] = TYPE.STRING;
} else if (m_dateAttributes.isInRange(i)) {
m_types[i] = TYPE.DATE;
} else if (m_numericAttributes.isInRange(i)) {
m_types[i] = TYPE.NUMERIC;
} else {
m_types[i] = TYPE.UNDETERMINED;
}
}
if (m_nominalLabelSpecs.size() > 0) {
for (String spec : m_nominalLabelSpecs) {
String[] attsAndLabels = spec.split(":");
if (attsAndLabels.length == 2) {
String[] labels = attsAndLabels[1].split(",");
try {
// try as a range string first
Range tempR = new Range();
tempR.setRanges(attsAndLabels[0].trim());
tempR.setUpper(m_structure.numAttributes() - 1);
int[] rangeIndexes = tempR.getSelection();
for (int i = 0; i < rangeIndexes.length; i++) {
m_types[rangeIndexes[i]] = TYPE.NOMINAL;
LinkedHashSet<String> ts = new LinkedHashSet<String>();
for (String lab : labels) {
ts.add(lab);
}
m_nominalVals.put(rangeIndexes[i], ts);
}
} catch (IllegalArgumentException e) {
// one or more named attributes?
String[] attNames = attsAndLabels[0].split(",");
for (String attN : attNames) {
Attribute a = m_structure.attribute(attN.trim());
if (a != null) {
int attIndex = a.index();
m_types[attIndex] = TYPE.NOMINAL;
LinkedHashSet<String> ts = new LinkedHashSet<String>();
for (String lab : labels) {
ts.add(lab);
}
m_nominalVals.put(attIndex, ts);
}
}
}
}
}
}
// Prevents the first row from getting lost in the
// case where there is no header row and we're
// running in batch mode
if (m_noHeaderRow && getRetrieval() == BATCH) {
StreamTokenizer tempT = new StreamTokenizer(new StringReader(firstRow));
initTokenizer(tempT);
tempT.ordinaryChar(m_FieldSeparator.charAt(0));
String checked = getInstance(tempT);
dumpRow(checked);
}
m_st = new StreamTokenizer(m_sourceReader);
initTokenizer(m_st);
m_st.ordinaryChar(m_FieldSeparator.charAt(0));
// try and determine a more accurate structure from the first batch
readData(false || getRetrieval() == BATCH);
makeStructure();
}