/**
* Get the latest (edited) literature/dbxref qualifiers
*
* @return
*/
public QualifierVector getQualifiers() {
QualifierVector referenceQualifier = null;
String literatureTxt = literatureTextArea.getText().trim();
if (!literatureTxt.equals("")) {
referenceQualifier = new QualifierVector();
String[] lits = getValues(literatureTxt);
StringVector litValues = new StringVector(lits);
Qualifier literature = new Qualifier("literature", litValues);
referenceQualifier.setQualifier(literature);
}
String dbxrefTxt = dbxrefTextArea.getText().trim();
if (!dbxrefTxt.equals("")) {
if (referenceQualifier == null) referenceQualifier = new QualifierVector();
String[] dbxrefs = getValues(dbxrefTxt);
StringVector dbxrefsValues = new StringVector(dbxrefs);
Qualifier dbxrefsQualifier = new Qualifier("Dbxref", dbxrefsValues);
referenceQualifier.setQualifier(dbxrefsQualifier);
}
return referenceQualifier;
}
private void updateFromFeature(Feature feature) {
GridBagConstraints c = new GridBagConstraints();
JPanel gridPanel = new JPanel(new GridBagLayout());
gridPanel.setBackground(Color.white);
//
// literature & dbxref
literatureTextArea = new QualifierTextArea();
literatureTextArea.setBorder(BorderFactory.createLineBorder(Color.gray));
dbxrefTextArea = new QualifierTextArea();
dbxrefTextArea.setBorder(BorderFactory.createLineBorder(Color.gray));
literatureTextArea
.getDocument()
.addDocumentListener(new TextAreaDocumentListener(literatureTextArea));
dbxrefTextArea.getDocument().addDocumentListener(new TextAreaDocumentListener(dbxrefTextArea));
final QualifierVector qualifiers = feature.getQualifiers().copy();
final StringBuffer litBuffer = new StringBuffer();
final StringBuffer dbxrefBuffer = new StringBuffer();
for (int i = 0; i < qualifiers.size(); ++i) {
Qualifier this_qualifier = (Qualifier) qualifiers.elementAt(i);
if (this_qualifier.getName().equals("literature"))
appendToBuffer(this_qualifier.getValues(), litBuffer);
else if (this_qualifier.getName().equalsIgnoreCase("Dbxref"))
appendToBuffer(this_qualifier.getValues(), dbxrefBuffer);
}
c.gridx = 0;
c.gridy = 0;
c.ipadx = 5;
c.ipady = 5;
c.anchor = GridBagConstraints.NORTHWEST;
c.fill = GridBagConstraints.NONE;
gridPanel.add(new JLabel("Literature"), c);
c.gridx = 1;
gridPanel.add(literatureTextArea, c);
c.gridx = 0;
c.gridy = 1;
gridPanel.add(new JLabel("Dbxref"), c);
c.gridx = 1;
gridPanel.add(dbxrefTextArea, c);
add(gridPanel);
literatureTextArea.setText(litBuffer.toString() + "\n");
dbxrefTextArea.setText(dbxrefBuffer.toString() + "\n");
}