@Override
public T readNext() {
T geneProfile;
do {
if (!baselineExpressionsKryoReader.readLine()) {
return null;
}
geneProfile =
buildObjectFromValues(
baselineExpressionsKryoReader.getGeneId(),
baselineExpressionsKryoReader.getGeneName(),
baselineExpressionsKryoReader.getExpressions());
} while (geneProfile == null);
return geneProfile;
}
protected KryoInputStream(
BaselineExpressionsKryoReader baselineExpressionsKryoReader,
String experimentAccession,
ExpressionsRowDeserializerBuilder expressionsRowDeserializerBuilder) {
this.baselineExpressionsKryoReader = baselineExpressionsKryoReader;
String[] firstLine = baselineExpressionsKryoReader.rewindAndReadAssays();
String[] headersWithoutGeneIdColumn = removeGeneIDAndNameColumns(firstLine);
expressionsRowRawDeserializer =
expressionsRowDeserializerBuilder
.forExperiment(experimentAccession)
.withHeaders(headersWithoutGeneIdColumn)
.build();
}
@Override
public void close() throws IOException {
baselineExpressionsKryoReader.close();
}